data_8C9E
#
_model_server_result.job_id            yqjsAi5TPCM7YhD1rwJDEw 
_model_server_result.datetime_utc      '2024-11-16 07:00:26' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8c9e 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":1003}' 
#
_entry.id    8C9E 
#
_exptl.entry_id    8C9E 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              458.493 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "N-[ISOLEUCINYL]-N'-[ADENOSYL]-DIAMINOSUFONE" 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8C9E 
_cell.length_a            127.09 
_cell.length_b            127.09 
_cell.length_c            163.22 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8C9E 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 C N N 
? 3 D N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A OE1 GLU 115 A GLU 115 1_555 R NA NA . A NA 1017 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.774 ? 
metalc ? metalc2 A OE1 GLU 520 A GLU 520 1_555 Q NA NA . A NA 1016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.957 ? 
metalc ? metalc3 A OE2 GLU 520 A GLU 520 1_555 Q NA NA . A NA 1016 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.173 ? 
metalc ? metalc4 A SG CYS 887 A CYS 887 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? 
metalc ? metalc5 A SG CYS 890 A CYS 890 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.321 ? 
metalc ? metalc6 A SG CYS 907 A CYS 907 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.328 ? 
metalc ? metalc7 A SG CYS 910 A CYS 910 1_555 B ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.325 ? 
#
_chem_comp.formula           'C16 H26 N8 O6 S' 
_chem_comp.formula_weight    458.493 
_chem_comp.id                ILA 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              "N-[ISOLEUCINYL]-N'-[ADENOSYL]-DIAMINOSUFONE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N CA ILA sing 150 n n 
N HN1 ILA sing 151 n n 
N HN2 ILA sing 152 n n 
CA CB ILA sing 153 n n 
CA C ILA sing 154 n n 
CA HA1 ILA sing 155 n n 
CB CG2 ILA sing 156 n n 
CB CG1 ILA sing 157 n n 
CB HB ILA sing 158 n n 
CG2 HG21 ILA sing 159 n n 
CG2 HG22 ILA sing 160 n n 
CG2 HG23 ILA sing 161 n n 
CG1 CD ILA sing 162 n n 
CG1 HG11 ILA sing 163 n n 
CG1 HG12 ILA sing 164 n n 
CD HD1 ILA sing 165 n n 
CD HD2 ILA sing 166 n n 
CD HD3 ILA sing 167 n n 
C O ILA doub 168 n n 
C N3A ILA sing 169 n n 
SA O1A ILA doub 170 n n 
SA O2A ILA doub 171 n n 
SA N3A ILA sing 172 n n 
SA N5' ILA sing 173 n n 
N3A HNA ILA sing 174 n n 
N5' C5' ILA sing 175 n n 
N5' HN5 ILA sing 176 n n 
C5' C4' ILA sing 177 n n 
C5' H51 ILA sing 178 n n 
C5' H52 ILA sing 179 n n 
C4' O4' ILA sing 180 n n 
C4' C3' ILA sing 181 n n 
C4' H4 ILA sing 182 n n 
O4' C1' ILA sing 183 n n 
C1' N9 ILA sing 184 n n 
C1' C2' ILA sing 185 n n 
C1' H1 ILA sing 186 n n 
N9 C4 ILA sing 187 n y 
N9 C8 ILA sing 188 n y 
C4 N3 ILA doub 189 n y 
C4 C5 ILA sing 190 n y 
N3 C2 ILA sing 191 n y 
C2 N1 ILA doub 192 n y 
C2 H2 ILA sing 193 n n 
N1 C6 ILA sing 194 n y 
C6 N6 ILA sing 195 n n 
C6 C5 ILA doub 196 n y 
N6 H61 ILA sing 197 n n 
N6 H62 ILA sing 198 n n 
C5 N7 ILA sing 199 n y 
N7 C8 ILA doub 200 n y 
C8 H8 ILA sing 201 n n 
C2' O2' ILA sing 202 n n 
C2' C3' ILA sing 203 n n 
C2' H2' ILA sing 204 n n 
O2' HO2 ILA sing 205 n n 
C3' O3' ILA sing 206 n n 
C3' H3 ILA sing 207 n n 
O3' HO3 ILA sing 208 n n 
#
_atom_sites.entry_id                     8C9E 
_atom_sites.fract_transf_matrix[1][1]    0.007868 
_atom_sites.fract_transf_matrix[1][2]    0.004543 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.009086 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006127 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 ZN A 1 1001 1001 ZN ZN . 
C 3 ILA A 1 1002 1401 ILA ILA . 
D 3 ILA A 1 1003 1403 ILA ILA . 
E 4 SO4 A 1 1004 1404 SO4 SO4 . 
F 4 SO4 A 1 1005 1405 SO4 SO4 . 
G 4 SO4 A 1 1006 1407 SO4 SO4 . 
H 4 SO4 A 1 1007 1408 SO4 SO4 . 
I 5 CL A 1 1008 3000 CL CL . 
J 5 CL A 1 1009 3001 CL CL . 
K 4 SO4 A 1 1010 3005 SO4 SO4 . 
L 4 SO4 A 1 1011 3006 SO4 SO4 . 
M 4 SO4 A 1 1012 3007 SO4 SO4 . 
N 6 LI A 1 1013 3 LI LI . 
O 5 CL A 1 1014 1 CL CL . 
P 5 CL A 1 1015 2 CL CL . 
Q 7 NA A 1 1016 2 NA NA . 
R 7 NA A 1 1017 3 NA NA . 
S 7 NA A 1 1018 4 NA NA . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N ILA . . . D 3 -63.857 -31.538 -45.812 1 96.26 ? N ILA 1003 A 1 
HETATM 2 C CA ILA . . . D 3 -64.994 -32.439 -45.758 1 117.51 ? CA ILA 1003 A 1 
HETATM 3 C CB ILA . . . D 3 -65.318 -32.979 -44.346 1 120.87 ? CB ILA 1003 A 1 
HETATM 4 C CG2 ILA . . . D 3 -65.893 -31.886 -43.443 1 136.73 ? CG2 ILA 1003 A 1 
HETATM 5 C CG1 ILA . . . D 3 -66.221 -34.216 -44.44 1 116.9 ? CG1 ILA 1003 A 1 
HETATM 6 C CD ILA . . . D 3 -66.973 -34.558 -43.161 1 101.72 ? CD ILA 1003 A 1 
HETATM 7 C C ILA . . . D 3 -66.148 -31.632 -46.332 1 120.03 ? C ILA 1003 A 1 
HETATM 8 O O ILA . . . D 3 -67.319 -31.932 -46.208 1 114.19 ? O ILA 1003 A 1 
HETATM 9 S SA ILA . . . D 3 -66.904 -29.496 -47.75 1 116.06 ? SA ILA 1003 A 1 
HETATM 10 O O1A ILA . . . D 3 -67.831 -30.396 -48.399 1 116.24 ? O1A ILA 1003 A 1 
HETATM 11 O O2A ILA . . . D 3 -66.194 -28.495 -48.506 1 128.21 ? O2A ILA 1003 A 1 
HETATM 12 N N3A ILA . . . D 3 -65.776 -30.521 -47.035 1 106.98 ? N3A ILA 1003 A 1 
HETATM 13 N N5' ILA . . . D 3 -67.667 -28.757 -46.514 1 128.92 ? N5' ILA 1003 A 1 
HETATM 14 C C5' ILA . . . D 3 -69.035 -28.297 -46.709 1 116.38 ? C5' ILA 1003 A 1 
HETATM 15 C C4' ILA . . . D 3 -69.803 -28.424 -45.403 1 116.06 ? C4' ILA 1003 A 1 
HETATM 16 O O4' ILA . . . D 3 -71.186 -28.631 -45.674 1 133.96 ? O4' ILA 1003 A 1 
HETATM 17 C C1' ILA . . . D 3 -71.489 -30.003 -45.681 1 121.48 ? C1' ILA 1003 A 1 
HETATM 18 N N9 ILA . . . D 3 -71.805 -30.434 -47.016 1 120.5 ? N9 ILA 1003 A 1 
HETATM 19 C C4 ILA . . . D 3 -73.061 -30.57 -47.536 1 119.9 ? C4 ILA 1003 A 1 
HETATM 20 N N3 ILA . . . D 3 -74.223 -30.339 -46.935 1 131.28 ? N3 ILA 1003 A 1 
HETATM 21 C C2 ILA . . . D 3 -75.241 -30.577 -47.74 1 125.18 ? C2 ILA 1003 A 1 
HETATM 22 N N1 ILA . . . D 3 -75.218 -30.994 -49.002 1 124.12 ? N1 ILA 1003 A 1 
HETATM 23 C C6 ILA . . . D 3 -74.041 -31.222 -49.593 1 124.26 ? C6 ILA 1003 A 1 
HETATM 24 N N6 ILA . . . D 3 -74.017 -31.64 -50.859 1 138.98 ? N6 ILA 1003 A 1 
HETATM 25 C C5 ILA . . . D 3 -72.875 -31.005 -48.837 1 117.64 ? C5 ILA 1003 A 1 
HETATM 26 N N7 ILA . . . D 3 -71.539 -31.135 -49.117 1 134.02 ? N7 ILA 1003 A 1 
HETATM 27 C C8 ILA . . . D 3 -70.94 -30.79 -48.018 1 120.08 ? C8 ILA 1003 A 1 
HETATM 28 C C2' ILA . . . D 3 -70.299 -30.744 -45.065 1 99.7 ? C2' ILA 1003 A 1 
HETATM 29 O O2' ILA . . . D 3 -70.764 -31.589 -44.057 1 94 ? O2' ILA 1003 A 1 
HETATM 30 C C3' ILA . . . D 3 -69.366 -29.627 -44.576 1 122.71 ? C3' ILA 1003 A 1 
HETATM 31 O O3' ILA . . . D 3 -69.6 -29.352 -43.221 1 124.56 ? O3' ILA 1003 A 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           275 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           31 
#