data_8C9G # _model_server_result.job_id YLlsstrz9wJGydFBeMB_CQ _model_server_result.datetime_utc '2024-11-16 22:31:44' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c9g # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":1004}' # _entry.id 8C9G # _exptl.entry_id 8C9G _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 6 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 95.64 _cell.angle_gamma 90 _cell.entry_id 8C9G _cell.length_a 66.82 _cell.length_b 144.28 _cell.length_c 108.37 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C9G _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q 1 1 A,C,D,E,F,G,P 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 6 J N N ? 6 K N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A SG CYS 887 A CYS 887 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.333 ? metalc ? metalc2 A SG CYS 890 A CYS 890 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.313 ? metalc ? metalc3 A SG CYS 907 A CYS 907 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.337 ? metalc ? metalc4 A SG CYS 910 A CYS 910 1_555 C ZN ZN . A ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc5 B SG CYS 887 B CYS 887 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.342 ? metalc ? metalc6 B SG CYS 890 B CYS 890 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.315 ? metalc ? metalc7 B SG CYS 907 B CYS 907 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.327 ? metalc ? metalc8 B SG CYS 910 B CYS 910 1_555 H ZN ZN . B ZN 1001 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.317 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8C9G _atom_sites.fract_transf_matrix[1][1] 0.014966 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001478 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.006931 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009273 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 ZN A 1 1001 1003 ZN ZN . D 3 MRC A 1 1002 1004 MRC MRC . E 4 CL A 1 1003 1 CL CL . F 4 CL A 1 1004 3 CL CL . G 5 NA A 1 1005 1 NA NA . H 2 ZN B 1 1001 1004 ZN ZN . I 3 MRC B 1 1002 1005 MRC MRC . J 6 GOL B 1 1003 1006 GOL GOL . K 6 GOL B 1 1004 1007 GOL GOL . L 4 CL B 1 1005 2 CL CL . M 4 CL B 1 1006 4 CL CL . N 5 NA B 1 1007 2 NA NA . O 5 NA B 1 1008 3 NA NA . P 7 HOH A 1 1101 4 HOH HOH . P 7 HOH A 2 1102 7 HOH HOH . P 7 HOH A 3 1103 2 HOH HOH . P 7 HOH A 4 1104 3 HOH HOH . P 7 HOH A 5 1105 6 HOH HOH . P 7 HOH A 6 1106 25 HOH HOH . P 7 HOH A 7 1107 13 HOH HOH . P 7 HOH A 8 1108 17 HOH HOH . P 7 HOH A 9 1109 10 HOH HOH . P 7 HOH A 10 1110 19 HOH HOH . P 7 HOH A 11 1111 18 HOH HOH . P 7 HOH A 12 1112 5 HOH HOH . P 7 HOH A 13 1113 16 HOH HOH . P 7 HOH A 14 1114 9 HOH HOH . P 7 HOH A 15 1115 26 HOH HOH . Q 7 HOH B 1 1101 8 HOH HOH . Q 7 HOH B 2 1102 11 HOH HOH . Q 7 HOH B 3 1103 1 HOH HOH . Q 7 HOH B 4 1104 23 HOH HOH . Q 7 HOH B 5 1105 12 HOH HOH . Q 7 HOH B 6 1106 20 HOH HOH . Q 7 HOH B 7 1107 22 HOH HOH . Q 7 HOH B 8 1108 14 HOH HOH . Q 7 HOH B 9 1109 21 HOH HOH . Q 7 HOH B 10 1110 15 HOH HOH . Q 7 HOH B 11 1111 24 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . K 6 -6.24 53.114 48.196 1 74.27 ? C1 GOL 1004 B 1 HETATM 2 O O1 GOL . . . K 6 -5.431 53.01 49.331 1 79.02 ? O1 GOL 1004 B 1 HETATM 3 C C2 GOL . . . K 6 -7.344 52.043 48.349 1 75.34 ? C2 GOL 1004 B 1 HETATM 4 O O2 GOL . . . K 6 -8.45 52.287 47.55 1 72.59 ? O2 GOL 1004 B 1 HETATM 5 C C3 GOL . . . K 6 -6.641 50.702 48.038 1 70.03 ? C3 GOL 1004 B 1 HETATM 6 O O3 GOL . . . K 6 -6.085 50.265 49.24 1 74.11 ? O3 GOL 1004 B 1 # _model_server_stats.io_time_ms 34 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 31 _model_server_stats.query_time_ms 302 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #