data_8C9W # _model_server_result.job_id YHbBPav2kbknJ41MOjc8JA _model_server_result.datetime_utc '2025-02-05 04:45:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c9w # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":1201}' # _entry.id 8C9W # _exptl.entry_id 8C9W _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 426.474 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-[2-azanyl-6-[1-[[6-(2-oxidanylpropan-2-yl)pyridin-2-yl]methyl]-1,2,3-triazol-4-yl]pyrimidin-4-yl]-2-methyl-benzenecarbonitrile _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8C9W _cell.length_a 39.155 _cell.length_b 178.226 _cell.length_c 139.595 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C9W _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 80 A CYS 71 1_555 A SG CYS 168 A CYS 159 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.05 ? disulf ? disulf2 A SG CYS 83 A CYS 74 1_555 A SG CYS 155 A CYS 146 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? disulf ? disulf3 A SG CYS 86 A CYS 77 1_555 A SG CYS 175 A CYS 166 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? disulf ? disulf4 A SG CYS 364 A CYS 259 1_555 A SG CYS 367 A CYS 262 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? # _chem_comp.formula 'C23 H22 N8 O' _chem_comp.formula_weight 426.474 _chem_comp.id U30 _chem_comp.mon_nstd_flag . _chem_comp.name 3-[2-azanyl-6-[1-[[6-(2-oxidanylpropan-2-yl)pyridin-2-yl]methyl]-1,2,3-triazol-4-yl]pyrimidin-4-yl]-2-methyl-benzenecarbonitrile _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C13 C14 U30 doub 632 n y C13 C12 U30 sing 633 n y C14 C15 U30 sing 634 n y C17 C16 U30 sing 635 n n C12 C11 U30 doub 636 n y C15 C16 U30 sing 637 n n C15 N5 U30 doub 638 n y C16 O U30 sing 639 n n C16 C18 U30 sing 640 n n C11 N5 U30 sing 641 n y C11 C10 U30 sing 642 n n C10 N4 U30 sing 643 n n N4 N6 U30 sing 644 n y N4 C9 U30 sing 645 n y N6 N7 U30 doub 646 n y C9 C8 U30 doub 647 n y N7 C8 U30 sing 648 n y C8 C7 U30 sing 649 n n C7 N3 U30 doub 650 n y C7 C19 U30 sing 651 n y N3 C6 U30 sing 652 n y C19 C5 U30 doub 653 n y C6 N2 U30 sing 654 n n C6 N1 U30 doub 655 n y C5 N1 U30 sing 656 n y C5 C4 U30 sing 657 n n C20 C4 U30 doub 658 n y C20 C21 U30 sing 659 n y C4 C2 U30 sing 660 n y C21 C22 U30 doub 661 n y C2 C3 U30 sing 662 n n C2 C1 U30 doub 663 n y C22 C1 U30 sing 664 n y C1 C U30 sing 665 n n C N U30 trip 666 n n C10 H7 U30 sing 667 n n C10 H6 U30 sing 668 n n C13 H9 U30 sing 669 n n C17 H13 U30 sing 670 n n C17 H12 U30 sing 671 n n C17 H11 U30 sing 672 n n C20 H19 U30 sing 673 n n C21 H20 U30 sing 674 n n C22 H21 U30 sing 675 n n O H14 U30 sing 676 n n C12 H8 U30 sing 677 n n C14 H10 U30 sing 678 n n C18 H15 U30 sing 679 n n C18 H17 U30 sing 680 n n C18 H16 U30 sing 681 n n C19 H18 U30 sing 682 n n C3 H2 U30 sing 683 n n C3 H1 U30 sing 684 n n C3 H U30 sing 685 n n C9 H5 U30 sing 686 n n N2 H4 U30 sing 687 n n N2 H3 U30 sing 688 n n # _atom_sites.entry_id 8C9W _atom_sites.fract_transf_matrix[1][1] 0.02554 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.005611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.007164 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 U30 A 1 1201 900 U30 LIG . C 3 CLR A 1 1202 2403 CLR CLR . D 3 CLR A 1 1203 2404 CLR CLR . E 3 CLR A 1 1204 2405 CLR CLR . F 4 OLA A 1 1205 2406 OLA OLA . G 4 OLA A 1 1206 2409 OLA OLA . H 4 OLA A 1 1207 2411 OLA OLA . I 4 OLA A 1 1208 2418 OLA OLA . J 5 OLC A 1 1209 2424 OLC OLC . K 6 OLB A 1 1210 2426 OLB OLB . L 5 OLC A 1 1211 2427 OLC OLC . M 7 PEG A 1 1212 2429 PEG PEG . N 4 OLA A 1 1213 2430 OLA OLA . O 8 HOH A 1 1301 55 HOH HOH . O 8 HOH A 2 1302 7 HOH HOH . O 8 HOH A 3 1303 6 HOH HOH . O 8 HOH A 4 1304 80 HOH HOH . O 8 HOH A 5 1305 21 HOH HOH . O 8 HOH A 6 1306 35 HOH HOH . O 8 HOH A 7 1307 4 HOH HOH . O 8 HOH A 8 1308 9 HOH HOH . O 8 HOH A 9 1309 46 HOH HOH . O 8 HOH A 10 1310 60 HOH HOH . O 8 HOH A 11 1311 14 HOH HOH . O 8 HOH A 12 1312 10 HOH HOH . O 8 HOH A 13 1313 30 HOH HOH . O 8 HOH A 14 1314 11 HOH HOH . O 8 HOH A 15 1315 42 HOH HOH . O 8 HOH A 16 1316 1 HOH HOH . O 8 HOH A 17 1317 81 HOH HOH . O 8 HOH A 18 1318 34 HOH HOH . O 8 HOH A 19 1319 44 HOH HOH . O 8 HOH A 20 1320 2 HOH HOH . O 8 HOH A 21 1321 40 HOH HOH . O 8 HOH A 22 1322 5 HOH HOH . O 8 HOH A 23 1323 3 HOH HOH . O 8 HOH A 24 1324 16 HOH HOH . O 8 HOH A 25 1325 27 HOH HOH . O 8 HOH A 26 1326 18 HOH HOH . O 8 HOH A 27 1327 47 HOH HOH . O 8 HOH A 28 1328 38 HOH HOH . O 8 HOH A 29 1329 59 HOH HOH . O 8 HOH A 30 1330 39 HOH HOH . O 8 HOH A 31 1331 24 HOH HOH . O 8 HOH A 32 1332 28 HOH HOH . O 8 HOH A 33 1333 69 HOH HOH . O 8 HOH A 34 1334 12 HOH HOH . O 8 HOH A 35 1335 49 HOH HOH . O 8 HOH A 36 1336 54 HOH HOH . O 8 HOH A 37 1337 32 HOH HOH . O 8 HOH A 38 1338 25 HOH HOH . O 8 HOH A 39 1339 45 HOH HOH . O 8 HOH A 40 1340 41 HOH HOH . O 8 HOH A 41 1341 79 HOH HOH . O 8 HOH A 42 1342 31 HOH HOH . O 8 HOH A 43 1343 48 HOH HOH . O 8 HOH A 44 1344 19 HOH HOH . O 8 HOH A 45 1345 26 HOH HOH . O 8 HOH A 46 1346 56 HOH HOH . O 8 HOH A 47 1347 33 HOH HOH . O 8 HOH A 48 1348 63 HOH HOH . O 8 HOH A 49 1349 78 HOH HOH . O 8 HOH A 50 1350 23 HOH HOH . O 8 HOH A 51 1351 66 HOH HOH . O 8 HOH A 52 1352 29 HOH HOH . O 8 HOH A 53 1353 43 HOH HOH . O 8 HOH A 54 1354 57 HOH HOH . O 8 HOH A 55 1355 20 HOH HOH . O 8 HOH A 56 1356 8 HOH HOH . O 8 HOH A 57 1357 17 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N1 U30 . . . B 2 20.05 5.513 18.649 1 25.63 ? N1 U30 1201 A 1 HETATM 2 N N3 U30 . . . B 2 18.637 7.012 17.445 1 28.71 ? N3 U30 1201 A 1 HETATM 3 C C4 U30 . . . B 2 19.617 3.183 18.875 1 22.57 ? C4 U30 1201 A 1 HETATM 4 C C5 U30 . . . B 2 19.198 4.516 18.385 1 25.42 ? C5 U30 1201 A 1 HETATM 5 C C6 U30 . . . B 2 19.743 6.712 18.142 1 20.27 ? C6 U30 1201 A 1 HETATM 6 C C7 U30 . . . B 2 17.795 5.99 17.231 1 29.18 ? C7 U30 1201 A 1 HETATM 7 C C8 U30 . . . B 2 16.596 6.302 16.447 1 23.59 ? C8 U30 1201 A 1 HETATM 8 C C10 U30 . . . B 2 13.943 8.18 14.952 1 31.13 ? C10 U30 1201 A 1 HETATM 9 C C13 U30 . . . B 2 14.877 9.01 11.407 1 32.83 ? C13 U30 1201 A 1 HETATM 10 C C15 U30 . . . B 2 15.751 10.624 12.932 1 31.71 ? C15 U30 1201 A 1 HETATM 11 C C17 U30 . . . B 2 17.033 12.508 11.979 1 47.4 ? C17 U30 1201 A 1 HETATM 12 C C20 U30 . . . B 2 20.974 2.882 18.834 1 29.24 ? C20 U30 1201 A 1 HETATM 13 C C21 U30 . . . B 2 21.411 1.614 19.18 1 25.9 ? C21 U30 1201 A 1 HETATM 14 C C22 U30 . . . B 2 20.508 0.646 19.57 1 22.7 ? C22 U30 1201 A 1 HETATM 15 N N U30 . . . B 2 17.498 -1.034 20.02 1 25.66 ? N U30 1201 A 1 HETATM 16 C C U30 . . . B 2 18.211 -0.144 19.851 1 28.73 ? C U30 1201 A 1 HETATM 17 O O U30 . . . B 2 17.666 11.557 14.051 1 46.08 ? O U30 1201 A 1 HETATM 18 C C1 U30 . . . B 2 19.148 0.928 19.622 1 23.89 ? C1 U30 1201 A 1 HETATM 19 C C11 U30 . . . B 2 14.468 8.891 13.736 1 33.54 ? C11 U30 1201 A 1 HETATM 20 C C12 U30 . . . B 2 14.281 8.372 12.472 1 32.11 ? C12 U30 1201 A 1 HETATM 21 C C14 U30 . . . B 2 15.628 10.146 11.628 1 31.32 ? C14 U30 1201 A 1 HETATM 22 C C16 U30 . . . B 2 16.507 11.914 13.277 1 36.06 ? C16 U30 1201 A 1 HETATM 23 C C18 U30 . . . B 2 15.745 12.982 14.06 1 34.41 ? C18 U30 1201 A 1 HETATM 24 C C19 U30 . . . B 2 18.043 4.716 17.658 1 21.99 ? C19 U30 1201 A 1 HETATM 25 C C2 U30 . . . B 2 18.686 2.218 19.299 1 33.25 ? C2 U30 1201 A 1 HETATM 26 C C3 U30 . . . B 2 17.212 2.515 19.441 1 27.79 ? C3 U30 1201 A 1 HETATM 27 C C9 U30 . . . B 2 16.125 7.515 16.025 1 27.75 ? C9 U30 1201 A 1 HETATM 28 N N2 U30 . . . B 2 20.625 7.687 18.334 1 27.81 ? N2 U30 1201 A 1 HETATM 29 N N4 U30 . . . B 2 14.928 7.247 15.482 1 28.21 ? N4 U30 1201 A 1 HETATM 30 N N5 U30 . . . B 2 15.188 9.992 13.967 1 32.1 ? N5 U30 1201 A 1 HETATM 31 N N6 U30 . . . B 2 14.67 5.929 15.491 1 30.13 ? N6 U30 1201 A 1 HETATM 32 N N7 U30 . . . B 2 15.697 5.35 16.076 1 31.4 ? N7 U30 1201 A 1 HETATM 33 H H7 U30 . . . B 2 13.029 7.64 14.706 1 37.48 ? H7 U30 1201 A 1 HETATM 34 H H6 U30 . . . B 2 13.678 8.902 15.723 1 37.48 ? H6 U30 1201 A 1 HETATM 35 H H9 U30 . . . B 2 14.757 8.619 10.398 1 39.53 ? H9 U30 1201 A 1 HETATM 36 H H13 U30 . . . B 2 17.451 11.741 11.329 1 57.01 ? H13 U30 1201 A 1 HETATM 37 H H12 U30 . . . B 2 17.818 13.24 12.165 1 57.01 ? H12 U30 1201 A 1 HETATM 38 H H11 U30 . . . B 2 16.245 13.012 11.422 1 57.01 ? H11 U30 1201 A 1 HETATM 39 H H19 U30 . . . B 2 21.688 3.645 18.529 1 35.21 ? H19 U30 1201 A 1 HETATM 40 H H20 U30 . . . B 2 22.474 1.384 19.144 1 31.2 ? H20 U30 1201 A 1 HETATM 41 H H21 U30 . . . B 2 20.86 -0.348 19.839 1 27.36 ? H21 U30 1201 A 1 HETATM 42 H H14 U30 . . . B 2 18.385 12.197 13.806 1 55.42 ? H14 U30 1201 A 1 HETATM 43 H H8 U30 . . . B 2 13.676 7.48 12.314 1 38.66 ? H8 U30 1201 A 1 HETATM 44 H H10 U30 . . . B 2 16.115 10.662 10.802 1 37.71 ? H10 U30 1201 A 1 HETATM 45 H H15 U30 . . . B 2 14.907 13.396 13.502 1 41.41 ? H15 U30 1201 A 1 HETATM 46 H H17 U30 . . . B 2 16.371 13.83 14.335 1 41.41 ? H17 U30 1201 A 1 HETATM 47 H H16 U30 . . . B 2 15.327 12.604 14.992 1 41.41 ? H16 U30 1201 A 1 HETATM 48 H H18 U30 . . . B 2 17.372 3.885 17.444 1 26.51 ? H18 U30 1201 A 1 HETATM 49 H H2 U30 . . . B 2 17.003 3.545 19.727 1 33.48 ? H2 U30 1201 A 1 HETATM 50 H H1 U30 . . . B 2 16.718 1.903 20.195 1 33.48 ? H1 U30 1201 A 1 HETATM 51 H H U30 . . . B 2 16.647 2.352 18.524 1 33.48 ? H U30 1201 A 1 HETATM 52 H H5 U30 . . . B 2 16.573 8.506 16.087 1 33.43 ? H5 U30 1201 A 1 HETATM 53 H H4 U30 . . . B 2 20.466 8.62 17.966 1 33.5 ? H4 U30 1201 A 1 HETATM 54 H H3 U30 . . . B 2 21.482 7.526 18.853 1 33.5 ? H3 U30 1201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 54 #