data_8C9Y # _model_server_result.job_id ZD1U1DkDvqY0YYx9r_TDBA _model_server_result.datetime_utc '2024-11-25 03:52:39' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8c9y # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":106}' # _entry.id 8C9Y # _exptl.entry_id 8C9Y _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8C9Y _cell.length_a 75.933 _cell.length_b 75.933 _cell.length_c 113.851 _cell.Z_PDB 18 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8C9Y _symmetry.cell_setting ? _symmetry.Int_Tables_number 155 _symmetry.space_group_name_Hall 'R 3 2"' _symmetry.space_group_name_H-M 'H 3 2' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 F N N ? 4 G N N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 305 n n C1 C2 GOL sing 306 n n C1 H11 GOL sing 307 n n C1 H12 GOL sing 308 n n O1 HO1 GOL sing 309 n n C2 O2 GOL sing 310 n n C2 C3 GOL sing 311 n n C2 H2 GOL sing 312 n n O2 HO2 GOL sing 313 n n C3 O3 GOL sing 314 n n C3 H31 GOL sing 315 n n C3 H32 GOL sing 316 n n O3 HO3 GOL sing 317 n n # _atom_sites.entry_id 8C9Y _atom_sites.fract_transf_matrix[1][1] 0.01317 _atom_sites.fract_transf_matrix[1][2] 0.007603 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015207 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008783 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EVB A 1 101 101 EVB EVB . C 2 EVB A 1 102 201 EVB EVB . D 3 BDF A 1 103 301 BDF BDF . E 3 BDF A 1 104 401 BDF BDF . F 4 GOL A 1 105 501 GOL GOL . G 4 GOL A 1 106 601 GOL GOL . H 5 HOH A 1 201 113 HOH HOH . H 5 HOH A 2 202 92 HOH HOH . H 5 HOH A 3 203 3 HOH HOH . H 5 HOH A 4 204 103 HOH HOH . H 5 HOH A 5 205 88 HOH HOH . H 5 HOH A 6 206 15 HOH HOH . H 5 HOH A 7 207 124 HOH HOH . H 5 HOH A 8 208 36 HOH HOH . H 5 HOH A 9 209 23 HOH HOH . H 5 HOH A 10 210 45 HOH HOH . H 5 HOH A 11 211 10 HOH HOH . H 5 HOH A 12 212 35 HOH HOH . H 5 HOH A 13 213 64 HOH HOH . H 5 HOH A 14 214 102 HOH HOH . H 5 HOH A 15 215 5 HOH HOH . H 5 HOH A 16 216 13 HOH HOH . H 5 HOH A 17 217 1 HOH HOH . H 5 HOH A 18 218 53 HOH HOH . H 5 HOH A 19 219 40 HOH HOH . H 5 HOH A 20 220 120 HOH HOH . H 5 HOH A 21 221 48 HOH HOH . H 5 HOH A 22 222 16 HOH HOH . H 5 HOH A 23 223 29 HOH HOH . H 5 HOH A 24 224 44 HOH HOH . H 5 HOH A 25 225 107 HOH HOH . H 5 HOH A 26 226 21 HOH HOH . H 5 HOH A 27 227 18 HOH HOH . H 5 HOH A 28 228 8 HOH HOH . H 5 HOH A 29 229 52 HOH HOH . H 5 HOH A 30 230 2 HOH HOH . H 5 HOH A 31 231 125 HOH HOH . H 5 HOH A 32 232 30 HOH HOH . H 5 HOH A 33 233 12 HOH HOH . H 5 HOH A 34 234 112 HOH HOH . H 5 HOH A 35 235 22 HOH HOH . H 5 HOH A 36 236 93 HOH HOH . H 5 HOH A 37 237 97 HOH HOH . H 5 HOH A 38 238 101 HOH HOH . H 5 HOH A 39 239 33 HOH HOH . H 5 HOH A 40 240 14 HOH HOH . H 5 HOH A 41 241 20 HOH HOH . H 5 HOH A 42 242 106 HOH HOH . H 5 HOH A 43 243 42 HOH HOH . H 5 HOH A 44 244 110 HOH HOH . H 5 HOH A 45 245 70 HOH HOH . H 5 HOH A 46 246 105 HOH HOH . H 5 HOH A 47 247 66 HOH HOH . H 5 HOH A 48 248 116 HOH HOH . H 5 HOH A 49 249 57 HOH HOH . H 5 HOH A 50 250 55 HOH HOH . H 5 HOH A 51 251 43 HOH HOH . H 5 HOH A 52 252 19 HOH HOH . H 5 HOH A 53 253 108 HOH HOH . H 5 HOH A 54 254 6 HOH HOH . H 5 HOH A 55 255 4 HOH HOH . H 5 HOH A 56 256 37 HOH HOH . H 5 HOH A 57 257 104 HOH HOH . H 5 HOH A 58 258 118 HOH HOH . H 5 HOH A 59 259 49 HOH HOH . H 5 HOH A 60 260 34 HOH HOH . H 5 HOH A 61 261 7 HOH HOH . H 5 HOH A 62 262 50 HOH HOH . H 5 HOH A 63 263 32 HOH HOH . H 5 HOH A 64 264 114 HOH HOH . H 5 HOH A 65 265 122 HOH HOH . H 5 HOH A 66 266 115 HOH HOH . H 5 HOH A 67 267 54 HOH HOH . H 5 HOH A 68 268 47 HOH HOH . H 5 HOH A 69 269 39 HOH HOH . H 5 HOH A 70 270 119 HOH HOH . H 5 HOH A 71 271 28 HOH HOH . H 5 HOH A 72 272 41 HOH HOH . H 5 HOH A 73 273 27 HOH HOH . H 5 HOH A 74 274 17 HOH HOH . H 5 HOH A 75 275 91 HOH HOH . H 5 HOH A 76 276 121 HOH HOH . H 5 HOH A 77 277 98 HOH HOH . H 5 HOH A 78 278 63 HOH HOH . H 5 HOH A 79 279 11 HOH HOH . H 5 HOH A 80 280 25 HOH HOH . H 5 HOH A 81 281 94 HOH HOH . H 5 HOH A 82 282 60 HOH HOH . H 5 HOH A 83 283 96 HOH HOH . H 5 HOH A 84 284 117 HOH HOH . H 5 HOH A 85 285 111 HOH HOH . H 5 HOH A 86 286 31 HOH HOH . H 5 HOH A 87 287 58 HOH HOH . H 5 HOH A 88 288 123 HOH HOH . H 5 HOH A 89 289 38 HOH HOH . H 5 HOH A 90 290 100 HOH HOH . H 5 HOH A 91 291 109 HOH HOH . H 5 HOH A 92 292 46 HOH HOH . H 5 HOH A 93 293 99 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . G 4 11.517 11.015 9.493 0.7 34.55 ? C1 GOL 106 A 1 HETATM 2 O O1 GOL . . . G 4 10.776 9.85 9.333 0.7 45.5 ? O1 GOL 106 A 1 HETATM 3 C C2 GOL . . . G 4 10.55 12.099 10.011 0.7 34.15 ? C2 GOL 106 A 1 HETATM 4 O O2 GOL . . . G 4 10.036 12.876 8.984 0.7 43.92 ? O2 GOL 106 A 1 HETATM 5 C C3 GOL . . . G 4 11.381 12.927 11.004 0.7 28.75 ? C3 GOL 106 A 1 HETATM 6 O O3 GOL . . . G 4 10.77 14.173 11.082 0.7 37.52 ? O3 GOL 106 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 5 _model_server_stats.element_count 6 #