data_8CAJ # _model_server_result.job_id -t_dhryYpuxgiUX7zN41Yg _model_server_result.datetime_utc '2024-10-12 14:29:38' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8caj # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8CAJ # _exptl.entry_id 8CAJ _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 595.687 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{R})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 99.906 _cell.angle_gamma 90 _cell.entry_id 8CAJ _cell.length_a 115.784 _cell.length_b 53.524 _cell.length_c 45.468 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CAJ _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_556 -x,y,-z+1 -1 0 0 0 1 0 0 0 -1 -7.821963 0 44.790132 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id SG _struct_conn.ptnr1_label_comp_id CYS _struct_conn.ptnr1_label_seq_id 145 _struct_conn.ptnr1_auth_asym_id AAA _struct_conn.ptnr1_auth_comp_id CYS _struct_conn.ptnr1_auth_seq_id 145 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C57 _struct_conn.ptnr2_label_comp_id UAX _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id AAA _struct_conn.ptnr2_auth_comp_id UAX _struct_conn.ptnr2_auth_seq_id 401 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.815 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C31 H41 N5 O7' _chem_comp.formula_weight 595.687 _chem_comp.id UAX _chem_comp.mon_nstd_flag . _chem_comp.name '~{tert}-butyl ~{N}-[1-[(2~{S})-3-cyclopropyl-1-oxidanylidene-1-[[(2~{S},3~{S})-3-oxidanyl-4-oxidanylidene-1-[(3~{R})-2-oxidanylidenepyrrolidin-3-yl]-4-[(phenylmethyl)amino]butan-2-yl]amino]propan-2-yl]-2-oxidanylidene-pyridin-3-yl]carbamate' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms '(S,S,R)-13b;ketoamide inhibitor 13b (bound)' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C17 C18 UAX sing 358 n n C17 C16 UAX doub 359 n n C25 C23 UAX doub 360 n y C25 C26 UAX sing 361 n y C18 C19 UAX doub 362 n n C23 C15 UAX sing 363 n y C16 N15 UAX sing 364 n n C26 C28 UAX doub 365 n y O26 C24 UAX doub 366 n n C15 C14 UAX doub 367 n y C19 N23 UAX sing 368 n n C19 C21 UAX sing 369 n n C24 O25 UAX sing 370 n n C24 N23 UAX sing 371 n n C31 C27 UAX sing 372 n n O25 C27 UAX sing 373 n n C28 C14 UAX sing 374 n y N15 C21 UAX sing 375 n n N15 C20 UAX sing 376 n n C14 C13 UAX sing 377 n n C34 C29 UAX sing 378 n n C34 C30 UAX sing 379 n n O37 C36 UAX doub 380 n n C22 C29 UAX sing 381 n n C22 C20 UAX sing 382 n n C21 O22 UAX doub 383 n n C29 C30 UAX sing 384 n n C27 C32 UAX sing 385 n n C27 C33 UAX sing 386 n n N36 C13 UAX sing 387 n n N36 C35 UAX sing 388 n n C20 C36 UAX sing 389 n n C36 N38 UAX sing 390 n n O41 C35 UAX doub 391 n n C35 C57 UAX sing 392 n n C54 C51 UAX sing 393 n n C54 C45 UAX sing 394 n n C51 N49 UAX sing 395 n n N38 C40 UAX sing 396 n n C40 C57 UAX sing 397 n n C40 C42 UAX sing 398 n n C57 O40 UAX sing 399 n n C45 C42 UAX sing 400 n n C45 C47 UAX sing 401 n n N49 C47 UAX sing 402 n n C47 O48 UAX doub 403 n n C31 H1 UAX sing 404 n n C31 H2 UAX sing 405 n n C31 H3 UAX sing 406 n n C32 H4 UAX sing 407 n n C32 H5 UAX sing 408 n n C32 H6 UAX sing 409 n n C33 H7 UAX sing 410 n n C33 H8 UAX sing 411 n n C33 H9 UAX sing 412 n n N23 H10 UAX sing 413 n n C18 H11 UAX sing 414 n n C17 H12 UAX sing 415 n n C16 H13 UAX sing 416 n n C20 H14 UAX sing 417 n n C22 H15 UAX sing 418 n n C22 H16 UAX sing 419 n n C29 H17 UAX sing 420 n n C34 H18 UAX sing 421 n n C34 H19 UAX sing 422 n n C30 H20 UAX sing 423 n n C30 H21 UAX sing 424 n n N38 H22 UAX sing 425 n n C40 H23 UAX sing 426 n n C42 H24 UAX sing 427 n n C42 H25 UAX sing 428 n n C45 H26 UAX sing 429 n n N49 H27 UAX sing 430 n n C51 H28 UAX sing 431 n n C51 H29 UAX sing 432 n n C54 H30 UAX sing 433 n n C54 H31 UAX sing 434 n n C57 H32 UAX sing 435 n n O40 H33 UAX sing 436 n n N36 H34 UAX sing 437 n n C13 H35 UAX sing 438 n n C13 H36 UAX sing 439 n n C28 H37 UAX sing 440 n n C26 H38 UAX sing 441 n n C25 H39 UAX sing 442 n n C23 H40 UAX sing 443 n n C15 H41 UAX sing 444 n n # _atom_sites.entry_id 8CAJ _atom_sites.fract_transf_matrix[1][1] 0.008637 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001508 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.018683 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.022326 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UAX AAA 1 401 401 UAX LIG . C 3 HOH AAA 1 501 80 HOH HOH . C 3 HOH AAA 2 502 62 HOH HOH . C 3 HOH AAA 3 503 16 HOH HOH . C 3 HOH AAA 4 504 77 HOH HOH . C 3 HOH AAA 5 505 38 HOH HOH . C 3 HOH AAA 6 506 57 HOH HOH . C 3 HOH AAA 7 507 79 HOH HOH . C 3 HOH AAA 8 508 46 HOH HOH . C 3 HOH AAA 9 509 29 HOH HOH . C 3 HOH AAA 10 510 41 HOH HOH . C 3 HOH AAA 11 511 34 HOH HOH . C 3 HOH AAA 12 512 74 HOH HOH . C 3 HOH AAA 13 513 60 HOH HOH . C 3 HOH AAA 14 514 8 HOH HOH . C 3 HOH AAA 15 515 63 HOH HOH . C 3 HOH AAA 16 516 64 HOH HOH . C 3 HOH AAA 17 517 11 HOH HOH . C 3 HOH AAA 18 518 12 HOH HOH . C 3 HOH AAA 19 519 56 HOH HOH . C 3 HOH AAA 20 520 84 HOH HOH . C 3 HOH AAA 21 521 20 HOH HOH . C 3 HOH AAA 22 522 40 HOH HOH . C 3 HOH AAA 23 523 82 HOH HOH . C 3 HOH AAA 24 524 13 HOH HOH . C 3 HOH AAA 25 525 22 HOH HOH . C 3 HOH AAA 26 526 21 HOH HOH . C 3 HOH AAA 27 527 3 HOH HOH . C 3 HOH AAA 28 528 14 HOH HOH . C 3 HOH AAA 29 529 18 HOH HOH . C 3 HOH AAA 30 530 75 HOH HOH . C 3 HOH AAA 31 531 31 HOH HOH . C 3 HOH AAA 32 532 17 HOH HOH . C 3 HOH AAA 33 533 39 HOH HOH . C 3 HOH AAA 34 534 70 HOH HOH . C 3 HOH AAA 35 535 53 HOH HOH . C 3 HOH AAA 36 536 42 HOH HOH . C 3 HOH AAA 37 537 78 HOH HOH . C 3 HOH AAA 38 538 58 HOH HOH . C 3 HOH AAA 39 539 65 HOH HOH . C 3 HOH AAA 40 540 26 HOH HOH . C 3 HOH AAA 41 541 51 HOH HOH . C 3 HOH AAA 42 542 35 HOH HOH . C 3 HOH AAA 43 543 72 HOH HOH . C 3 HOH AAA 44 544 47 HOH HOH . C 3 HOH AAA 45 545 54 HOH HOH . C 3 HOH AAA 46 546 73 HOH HOH . C 3 HOH AAA 47 547 48 HOH HOH . C 3 HOH AAA 48 548 28 HOH HOH . C 3 HOH AAA 49 549 27 HOH HOH . C 3 HOH AAA 50 550 55 HOH HOH . C 3 HOH AAA 51 551 52 HOH HOH . C 3 HOH AAA 52 552 69 HOH HOH . C 3 HOH AAA 53 553 61 HOH HOH . C 3 HOH AAA 54 554 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O O26 UAX . . . B 2 -13.556 5.356 -0.669 1 68.51 0 O26 UAX 401 AAA 1 HETATM 2 C C24 UAX . . . B 2 -14.639 5.368 -0.137 1 60.63 0 C24 UAX 401 AAA 1 HETATM 3 O O25 UAX . . . B 2 -15.456 6.428 -0.027 1 60.49 0 O25 UAX 401 AAA 1 HETATM 4 C C27 UAX . . . B 2 -15.115 7.604 0.804 1 64.23 0 C27 UAX 401 AAA 1 HETATM 5 C C31 UAX . . . B 2 -14.737 8.747 -0.111 1 64.56 0 C31 UAX 401 AAA 1 HETATM 6 C C32 UAX . . . B 2 -16.395 7.912 1.546 1 64.64 0 C32 UAX 401 AAA 1 HETATM 7 C C33 UAX . . . B 2 -13.99 7.271 1.76 1 66.9 0 C33 UAX 401 AAA 1 HETATM 8 N N23 UAX . . . B 2 -15.245 4.311 0.449 1 55.43 0 N23 UAX 401 AAA 1 HETATM 9 C C19 UAX . . . B 2 -15.568 3.076 -0.142 1 54.55 0 C19 UAX 401 AAA 1 HETATM 10 C C21 UAX . . . B 2 -15.622 2.003 0.74 1 53.29 0 C21 UAX 401 AAA 1 HETATM 11 O O22 UAX . . . B 2 -15.405 2.076 1.941 1 53.18 0 O22 UAX 401 AAA 1 HETATM 12 C C18 UAX . . . B 2 -15.819 2.913 -1.511 1 54.9 0 C18 UAX 401 AAA 1 HETATM 13 C C17 UAX . . . B 2 -16.128 1.649 -2.004 1 52.13 0 C17 UAX 401 AAA 1 HETATM 14 C C16 UAX . . . B 2 -16.184 0.606 -1.155 1 52.83 0 C16 UAX 401 AAA 1 HETATM 15 N N15 UAX . . . B 2 -15.962 0.763 0.188 1 52.72 0 N15 UAX 401 AAA 1 HETATM 16 C C20 UAX . . . B 2 -15.997 -0.404 1.089 1 52.24 0 C20 UAX 401 AAA 1 HETATM 17 C C22 UAX . . . B 2 -16.915 -1.534 0.612 1 52.28 0 C22 UAX 401 AAA 1 HETATM 18 C C29 UAX . . . B 2 -18.378 -1.216 0.773 1 52.61 0 C29 UAX 401 AAA 1 HETATM 19 C C34 UAX . . . B 2 -19.427 -2.179 0.314 1 51.56 0 C34 UAX 401 AAA 1 HETATM 20 C C30 UAX . . . B 2 -19.201 -1.968 1.771 1 50.66 0 C30 UAX 401 AAA 1 HETATM 21 C C36 UAX . . . B 2 -14.576 -0.901 1.309 1 52.09 0 C36 UAX 401 AAA 1 HETATM 22 O O37 UAX . . . B 2 -13.781 -0.884 0.374 1 56.65 0 O37 UAX 401 AAA 1 HETATM 23 N N38 UAX . . . B 2 -14.245 -1.332 2.532 1 51.98 0 N38 UAX 401 AAA 1 HETATM 24 C C40 UAX . . . B 2 -12.883 -1.703 2.889 1 54.39 0 C40 UAX 401 AAA 1 HETATM 25 C C42 UAX . . . B 2 -12.353 -0.798 3.993 1 55.09 0 C42 UAX 401 AAA 1 HETATM 26 C C45 UAX . . . B 2 -11.06 -0.133 3.532 1 60.68 0 C45 UAX 401 AAA 1 HETATM 27 C C47 UAX . . . B 2 -10.61 1.017 4.408 1 64.11 0 C47 UAX 401 AAA 1 HETATM 28 O O48 UAX . . . B 2 -10.894 1.179 5.61 1 68.74 0 O48 UAX 401 AAA 1 HETATM 29 N N49 UAX . . . B 2 -9.851 1.819 3.67 1 62.09 0 N49 UAX 401 AAA 1 HETATM 30 C C51 UAX . . . B 2 -9.94 1.553 2.238 1 62.07 0 C51 UAX 401 AAA 1 HETATM 31 C C54 UAX . . . B 2 -11.043 0.504 2.149 1 60.69 0 C54 UAX 401 AAA 1 HETATM 32 C C57 UAX . . . B 2 -12.759 -3.196 3.2 1 55.53 0 C57 UAX 401 AAA 1 HETATM 33 O O40 UAX . . . B 2 -11.428 -3.539 3.557 1 53.14 0 O40 UAX 401 AAA 1 HETATM 34 C C35 UAX . . . B 2 -13.203 -3.887 1.921 1 55.89 0 C35 UAX 401 AAA 1 HETATM 35 O O41 UAX . . . B 2 -14.404 -4.073 1.729 1 52.92 0 O41 UAX 401 AAA 1 HETATM 36 N N36 UAX . . . B 2 -12.277 -4.221 1.025 1 57.93 0 N36 UAX 401 AAA 1 HETATM 37 C C13 UAX . . . B 2 -11.308 -5.276 1.243 1 59.53 0 C13 UAX 401 AAA 1 HETATM 38 C C14 UAX . . . B 2 -10.183 -5.307 0.238 1 59.5 0 C14 UAX 401 AAA 1 HETATM 39 C C28 UAX . . . B 2 -9.483 -6.486 0.023 1 62.02 0 C28 UAX 401 AAA 1 HETATM 40 C C26 UAX . . . B 2 -8.429 -6.535 -0.878 1 64.39 0 C26 UAX 401 AAA 1 HETATM 41 C C25 UAX . . . B 2 -8.061 -5.406 -1.566 1 62.83 0 C25 UAX 401 AAA 1 HETATM 42 C C23 UAX . . . B 2 -8.743 -4.228 -1.36 1 62.08 0 C23 UAX 401 AAA 1 HETATM 43 C C15 UAX . . . B 2 -9.794 -4.17 -0.455 1 61.55 0 C15 UAX 401 AAA 1 # _model_server_stats.io_time_ms 0 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 265 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 43 #