data_8CAT # _model_server_result.job_id C5DPhwz6qb183-Ebs0p7bQ _model_server_result.datetime_utc '2024-10-11 02:17:15' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cat # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":507}' # _entry.id 8CAT # _exptl.entry_id 8CAT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 616.487 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PROTOPORPHYRIN IX CONTAINING FE' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CAT _cell.length_a 142 _cell.length_b 142 _cell.length_c 103.7 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CAT _symmetry.cell_setting ? _symmetry.Int_Tables_number 154 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 32 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'point symmetry operation' ? ? 0.418202 0.818829 0.393083 0.818937 -0.527169 0.226985 0.393142 0.226989 -0.891033 -126.55513 140.74365 163.41545 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 C N N ? 2 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A OH TYR 357 A TYR 357 1_555 C FE HEM . A HEM 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.897 ? metalc ? metalc2 B OH TYR 357 B TYR 357 1_555 E FE HEM . B HEM 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.891 ? # _chem_comp.formula 'C34 H32 Fe N4 O4' _chem_comp.formula_weight 616.487 _chem_comp.id HEM _chem_comp.mon_nstd_flag . _chem_comp.name 'PROTOPORPHYRIN IX CONTAINING FE' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms HEME # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag CHA C1A HEM sing 129 n n CHA C4D HEM doub 130 n n CHA HHA HEM sing 131 n n CHB C4A HEM sing 132 n n CHB C1B HEM doub 133 n n CHB HHB HEM sing 134 n n CHC C4B HEM sing 135 n n CHC C1C HEM doub 136 n n CHC HHC HEM sing 137 n n CHD C4C HEM doub 138 n n CHD C1D HEM sing 139 n n CHD HHD HEM sing 140 n n C1A C2A HEM doub 141 n y C1A NA HEM sing 142 n y C2A C3A HEM sing 143 n y C2A CAA HEM sing 144 n n C3A C4A HEM doub 145 n y C3A CMA HEM sing 146 n n C4A NA HEM sing 147 n y CMA HMA HEM sing 148 n n CMA HMAA HEM sing 149 n n CMA HMAB HEM sing 150 n n CAA CBA HEM sing 151 n n CAA HAA HEM sing 152 n n CAA HAAA HEM sing 153 n n CBA CGA HEM sing 154 n n CBA HBA HEM sing 155 n n CBA HBAA HEM sing 156 n n CGA O1A HEM doub 157 n n CGA O2A HEM sing 158 n n C1B C2B HEM sing 159 n n C1B NB HEM sing 160 n n C2B C3B HEM doub 161 n n C2B CMB HEM sing 162 n n C3B C4B HEM sing 163 n n C3B CAB HEM sing 164 n n C4B NB HEM doub 165 n n CMB HMB HEM sing 166 n n CMB HMBA HEM sing 167 n n CMB HMBB HEM sing 168 n n CAB CBB HEM doub 169 n n CAB HAB HEM sing 170 n n CBB HBB HEM sing 171 n n CBB HBBA HEM sing 172 n n C1C C2C HEM sing 173 n y C1C NC HEM sing 174 n y C2C C3C HEM doub 175 n y C2C CMC HEM sing 176 n n C3C C4C HEM sing 177 n y C3C CAC HEM sing 178 n n C4C NC HEM sing 179 n y CMC HMC HEM sing 180 n n CMC HMCA HEM sing 181 n n CMC HMCB HEM sing 182 n n CAC CBC HEM doub 183 n n CAC HAC HEM sing 184 n n CBC HBC HEM sing 185 n n CBC HBCA HEM sing 186 n n C1D C2D HEM sing 187 n n C1D ND HEM doub 188 n n C2D C3D HEM doub 189 n n C2D CMD HEM sing 190 n n C3D C4D HEM sing 191 n n C3D CAD HEM sing 192 n n C4D ND HEM sing 193 n n CMD HMD HEM sing 194 n n CMD HMDA HEM sing 195 n n CMD HMDB HEM sing 196 n n CAD CBD HEM sing 197 n n CAD HAD HEM sing 198 n n CAD HADA HEM sing 199 n n CBD CGD HEM sing 200 n n CBD HBD HEM sing 201 n n CBD HBDA HEM sing 202 n n CGD O1D HEM doub 203 n n CGD O2D HEM sing 204 n n O2A H2A HEM sing 205 n n O2D H2D HEM sing 206 n n FE NA HEM sing 207 n n FE NB HEM sing 208 n n FE NC HEM sing 209 n n FE ND HEM sing 210 n n # _atom_sites.entry_id 8CAT _atom_sites.fract_transf_matrix[1][1] 0.007042 _atom_sites.fract_transf_matrix[1][2] 0.004066 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008132 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 HEM A 1 507 1 HEM HEM . D 3 NDP A 1 508 2 NDP NDP . E 2 HEM B 1 507 1 HEM HEM . F 3 NDP B 1 508 2 NDP NDP . G 4 HOH A 1 509 3 HOH HOH . G 4 HOH A 2 510 4 HOH HOH . G 4 HOH A 3 511 5 HOH HOH . G 4 HOH A 4 512 6 HOH HOH . G 4 HOH A 5 513 7 HOH HOH . G 4 HOH A 6 514 8 HOH HOH . G 4 HOH A 7 515 9 HOH HOH . G 4 HOH A 8 516 11 HOH HOH . G 4 HOH A 9 517 12 HOH HOH . G 4 HOH A 10 518 14 HOH HOH . G 4 HOH A 11 519 15 HOH HOH . G 4 HOH A 12 520 16 HOH HOH . G 4 HOH A 13 521 17 HOH HOH . G 4 HOH A 14 522 18 HOH HOH . G 4 HOH A 15 523 19 HOH HOH . G 4 HOH A 16 524 20 HOH HOH . G 4 HOH A 17 525 22 HOH HOH . G 4 HOH A 18 526 23 HOH HOH . G 4 HOH A 19 527 26 HOH HOH . G 4 HOH A 20 528 27 HOH HOH . G 4 HOH A 21 529 28 HOH HOH . G 4 HOH A 22 530 29 HOH HOH . G 4 HOH A 23 531 30 HOH HOH . G 4 HOH A 24 532 31 HOH HOH . G 4 HOH A 25 533 32 HOH HOH . G 4 HOH A 26 534 33 HOH HOH . G 4 HOH A 27 535 34 HOH HOH . G 4 HOH A 28 536 35 HOH HOH . G 4 HOH A 29 537 37 HOH HOH . G 4 HOH A 30 538 38 HOH HOH . G 4 HOH A 31 539 39 HOH HOH . G 4 HOH A 32 540 40 HOH HOH . G 4 HOH A 33 541 41 HOH HOH . G 4 HOH A 34 542 42 HOH HOH . G 4 HOH A 35 543 44 HOH HOH . G 4 HOH A 36 544 45 HOH HOH . G 4 HOH A 37 545 46 HOH HOH . G 4 HOH A 38 546 47 HOH HOH . G 4 HOH A 39 547 48 HOH HOH . G 4 HOH A 40 548 49 HOH HOH . G 4 HOH A 41 549 10 HOH HOH . G 4 HOH A 42 550 11 HOH HOH . G 4 HOH A 43 551 13 HOH HOH . G 4 HOH A 44 552 21 HOH HOH . G 4 HOH A 45 553 36 HOH HOH . G 4 HOH A 46 554 43 HOH HOH . G 4 HOH A 47 555 50 HOH HOH . G 4 HOH A 48 556 51 HOH HOH . H 4 HOH B 1 509 10 HOH HOH . H 4 HOH B 2 510 13 HOH HOH . H 4 HOH B 3 511 21 HOH HOH . H 4 HOH B 4 512 24 HOH HOH . H 4 HOH B 5 513 25 HOH HOH . H 4 HOH B 6 514 36 HOH HOH . H 4 HOH B 7 515 43 HOH HOH . H 4 HOH B 8 516 50 HOH HOH . H 4 HOH B 9 517 51 HOH HOH . H 4 HOH B 10 518 3 HOH HOH . H 4 HOH B 11 519 4 HOH HOH . H 4 HOH B 12 520 5 HOH HOH . H 4 HOH B 13 521 6 HOH HOH . H 4 HOH B 14 522 7 HOH HOH . H 4 HOH B 15 523 8 HOH HOH . H 4 HOH B 16 524 9 HOH HOH . H 4 HOH B 17 525 12 HOH HOH . H 4 HOH B 18 526 14 HOH HOH . H 4 HOH B 19 527 15 HOH HOH . H 4 HOH B 20 528 16 HOH HOH . H 4 HOH B 21 529 17 HOH HOH . H 4 HOH B 22 530 18 HOH HOH . H 4 HOH B 23 531 19 HOH HOH . H 4 HOH B 24 532 20 HOH HOH . H 4 HOH B 25 533 22 HOH HOH . H 4 HOH B 26 534 23 HOH HOH . H 4 HOH B 27 535 24 HOH HOH . H 4 HOH B 28 536 25 HOH HOH . H 4 HOH B 29 537 26 HOH HOH . H 4 HOH B 30 538 27 HOH HOH . H 4 HOH B 31 539 28 HOH HOH . H 4 HOH B 32 540 29 HOH HOH . H 4 HOH B 33 541 30 HOH HOH . H 4 HOH B 34 542 31 HOH HOH . H 4 HOH B 35 543 32 HOH HOH . H 4 HOH B 36 544 33 HOH HOH . H 4 HOH B 37 545 34 HOH HOH . H 4 HOH B 38 546 35 HOH HOH . H 4 HOH B 39 547 37 HOH HOH . H 4 HOH B 40 548 38 HOH HOH . H 4 HOH B 41 549 39 HOH HOH . H 4 HOH B 42 550 40 HOH HOH . H 4 HOH B 43 551 41 HOH HOH . H 4 HOH B 44 552 42 HOH HOH . H 4 HOH B 45 553 44 HOH HOH . H 4 HOH B 46 554 45 HOH HOH . H 4 HOH B 47 555 46 HOH HOH . H 4 HOH B 48 556 47 HOH HOH . H 4 HOH B 49 557 48 HOH HOH . H 4 HOH B 50 558 49 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C CHA HEM . . . C 2 -39.991 89.196 104.181 1 20.75 ? CHA HEM 507 A 1 HETATM 2 C CHB HEM . . . C 2 -35.538 87.873 102.802 1 19.09 ? CHB HEM 507 A 1 HETATM 3 C CHC HEM . . . C 2 -33.695 89.945 106.885 1 20.66 ? CHC HEM 507 A 1 HETATM 4 C CHD HEM . . . C 2 -37.904 92.096 107.475 1 21.52 ? CHD HEM 507 A 1 HETATM 5 C C1A HEM . . . C 2 -38.927 88.595 103.509 1 19.7 ? C1A HEM 507 A 1 HETATM 6 C C2A HEM . . . C 2 -39.093 87.72 102.387 1 18.85 ? C2A HEM 507 A 1 HETATM 7 C C3A HEM . . . C 2 -37.861 87.371 101.984 1 19.38 ? C3A HEM 507 A 1 HETATM 8 C C4A HEM . . . C 2 -36.914 88.037 102.835 1 19.49 ? C4A HEM 507 A 1 HETATM 9 C CMA HEM . . . C 2 -37.479 86.513 100.736 1 20.46 ? CMA HEM 507 A 1 HETATM 10 C CAA HEM . . . C 2 -40.448 87.443 101.716 1 18.82 ? CAA HEM 507 A 1 HETATM 11 C CBA HEM . . . C 2 -41.099 88.517 100.908 1 18.69 ? CBA HEM 507 A 1 HETATM 12 C CGA HEM . . . C 2 -42.244 88.404 100.008 1 19.41 ? CGA HEM 507 A 1 HETATM 13 O O1A HEM . . . C 2 -42.624 87.322 99.492 1 20.73 ? O1A HEM 507 A 1 HETATM 14 O O2A HEM . . . C 2 -42.921 89.398 99.602 1 19.8 ? O2A HEM 507 A 1 HETATM 15 C C1B HEM . . . C 2 -34.641 88.339 103.78 1 18.05 ? C1B HEM 507 A 1 HETATM 16 C C2B HEM . . . C 2 -33.205 88.319 103.628 1 17.38 ? C2B HEM 507 A 1 HETATM 17 C C3B HEM . . . C 2 -32.703 88.959 104.694 1 17.83 ? C3B HEM 507 A 1 HETATM 18 C C4B HEM . . . C 2 -33.786 89.32 105.581 1 19 ? C4B HEM 507 A 1 HETATM 19 C CMB HEM . . . C 2 -32.525 87.781 102.332 1 15.39 ? CMB HEM 507 A 1 HETATM 20 C CAB HEM . . . C 2 -31.213 89.151 105.001 1 18.03 ? CAB HEM 507 A 1 HETATM 21 C CBB HEM . . . C 2 -30.343 88.703 104.035 1 17.84 ? CBB HEM 507 A 1 HETATM 22 C C1C HEM . . . C 2 -34.688 90.822 107.656 1 22.01 ? C1C HEM 507 A 1 HETATM 23 C C2C HEM . . . C 2 -34.481 91.788 108.598 1 22.53 ? C2C HEM 507 A 1 HETATM 24 C C3C HEM . . . C 2 -35.701 92.368 108.681 1 22.99 ? C3C HEM 507 A 1 HETATM 25 C C4C HEM . . . C 2 -36.563 91.768 107.661 1 23.11 ? C4C HEM 507 A 1 HETATM 26 C CMC HEM . . . C 2 -33.155 92.028 109.264 1 21.65 ? CMC HEM 507 A 1 HETATM 27 C CAC HEM . . . C 2 -36.124 93.56 109.574 1 24.11 ? CAC HEM 507 A 1 HETATM 28 C CBC HEM . . . C 2 -35.268 94.609 109.648 1 23.53 ? CBC HEM 507 A 1 HETATM 29 C C1D HEM . . . C 2 -38.868 91.466 106.721 1 20.47 ? C1D HEM 507 A 1 HETATM 30 C C2D HEM . . . C 2 -40.312 91.645 106.784 1 20.88 ? C2D HEM 507 A 1 HETATM 31 C C3D HEM . . . C 2 -40.845 90.839 105.853 1 20.38 ? C3D HEM 507 A 1 HETATM 32 C C4D HEM . . . C 2 -39.771 90.164 105.179 1 21.15 ? C4D HEM 507 A 1 HETATM 33 C CMD HEM . . . C 2 -41.038 92.578 107.738 1 19.22 ? CMD HEM 507 A 1 HETATM 34 C CAD HEM . . . C 2 -42.335 90.639 105.523 1 20.02 ? CAD HEM 507 A 1 HETATM 35 C CBD HEM . . . C 2 -42.812 91.418 104.289 1 18.32 ? CBD HEM 507 A 1 HETATM 36 C CGD HEM . . . C 2 -44.298 91.647 104.394 1 17.28 ? CGD HEM 507 A 1 HETATM 37 O O1D HEM . . . C 2 -44.663 91.762 105.572 1 16.91 ? O1D HEM 507 A 1 HETATM 38 O O2D HEM . . . C 2 -44.901 91.741 103.299 1 18.21 ? O2D HEM 507 A 1 HETATM 39 N NA HEM . . . C 2 -37.566 88.794 103.79 1 19.24 ? NA HEM 507 A 1 HETATM 40 N NB HEM . . . C 2 -34.98 88.874 104.991 1 19.05 ? NB HEM 507 A 1 HETATM 41 N NC HEM . . . C 2 -35.714 90.82 106.868 1 21.77 ? NC HEM 507 A 1 HETATM 42 N ND HEM . . . C 2 -38.539 90.528 105.767 1 20.77 ? ND HEM 507 A 1 HETATM 43 FE FE HEM . . . C 2 -36.773 89.698 105.404 1 21.1 ? FE HEM 507 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 8 _model_server_stats.create_model_time_ms 17 _model_server_stats.query_time_ms 300 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 43 #