data_8CAV
#
_model_server_result.job_id            P_ZSEskQGfvTvkP4W5mu5A 
_model_server_result.datetime_utc      '2024-11-30 00:27:58' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cav 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"F","auth_seq_id":1002}' 
#
_entry.id    8CAV 
#
_exptl.entry_id    8CAV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              118.174 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (4S)-2-METHYL-2,4-PENTANEDIOL 
_entity.pdbx_number_of_molecules    4 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.25 
_cell.angle_gamma         90 
_cell.entry_id            8CAV 
_cell.length_a            84.37 
_cell.length_b            116.13 
_cell.length_c            97.41 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CAV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 E N N 
? 3 F N N 
? 3 I N N 
? 3 K N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 729 A CYS 729 1_555 A SG CYS 775 A CYS 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 729 B CYS 729 1_555 B SG CYS 775 B CYS 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 A OD2 ASP 368 A ASP 368 1_555 H MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc2 G O2A ANP . A ANP 1003 1_555 H MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc3 J O5' ANP . B ANP 1102 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
#
_chem_comp.formula           'C6 H14 O2' 
_chem_comp.formula_weight    118.174 
_chem_comp.id                MPD 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (4S)-2-METHYL-2,4-PENTANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 C2 MPD sing 287 n n 
C1 H11 MPD sing 288 n n 
C1 H12 MPD sing 289 n n 
C1 H13 MPD sing 290 n n 
C2 O2 MPD sing 291 n n 
C2 CM MPD sing 292 n n 
C2 C3 MPD sing 293 n n 
O2 HO2 MPD sing 294 n n 
CM HM1 MPD sing 295 n n 
CM HM2 MPD sing 296 n n 
CM HM3 MPD sing 297 n n 
C3 C4 MPD sing 298 n n 
C3 H31 MPD sing 299 n n 
C3 H32 MPD sing 300 n n 
C4 O4 MPD sing 301 n n 
C4 C5 MPD sing 302 n n 
C4 H4 MPD sing 303 n n 
O4 HO4 MPD sing 304 n n 
C5 H51 MPD sing 305 n n 
C5 H52 MPD sing 306 n n 
C5 H53 MPD sing 307 n n 
#
_atom_sites.entry_id                     8CAV 
_atom_sites.fract_transf_matrix[1][1]    0.011853 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003455 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008611 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MPD A 1 1001 1001 MPD MPD . 
F 3 MPD A 1 1002 1101 MPD MPD . 
G 4 ANP A 1 1003 901 ANP ANP . 
H 5 MG A 1 1004 1 MG MG . 
I 3 MPD B 1 1101 1101 MPD MPD . 
J 4 ANP B 1 1102 901 ANP ANP . 
K 3 MPD B 1 1103 1001 MPD MPD . 
L 5 MG B 1 1104 2 MG MG . 
M 6 HOH A 1 1101 10 HOH HOH . 
M 6 HOH A 2 1102 6 HOH HOH . 
M 6 HOH A 3 1103 4 HOH HOH . 
M 6 HOH A 4 1104 7 HOH HOH . 
M 6 HOH A 5 1105 9 HOH HOH . 
M 6 HOH A 6 1106 8 HOH HOH . 
M 6 HOH A 7 1107 1 HOH HOH . 
M 6 HOH A 8 1108 11 HOH HOH . 
M 6 HOH A 9 1109 3 HOH HOH . 
M 6 HOH A 10 1110 12 HOH HOH . 
M 6 HOH A 11 1111 13 HOH HOH . 
M 6 HOH A 12 1112 5 HOH HOH . 
M 6 HOH A 13 1113 14 HOH HOH . 
N 6 HOH B 1 1201 16 HOH HOH . 
N 6 HOH B 2 1202 2 HOH HOH . 
N 6 HOH B 3 1203 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 MPD . . . F 3 19.385 26.132 10.633 1 81.69 ? C1 MPD 1002 A 1 
HETATM 2 C C2 MPD . . . F 3 20.875 26.208 10.942 1 81.69 ? C2 MPD 1002 A 1 
HETATM 3 O O2 MPD . . . F 3 21.178 27.578 11.31 1 81.69 ? O2 MPD 1002 A 1 
HETATM 4 C CM MPD . . . F 3 21.736 25.85 9.739 1 81.69 ? CM MPD 1002 A 1 
HETATM 5 C C3 MPD . . . F 3 21.212 25.289 12.106 1 81.69 ? C3 MPD 1002 A 1 
HETATM 6 C C4 MPD . . . F 3 20.838 23.843 11.803 1 81.69 ? C4 MPD 1002 A 1 
HETATM 7 O O4 MPD . . . F 3 21.684 23.303 10.823 1 81.69 ? O4 MPD 1002 A 1 
HETATM 8 C C5 MPD . . . F 3 20.984 22.998 13.055 1 81.69 ? C5 MPD 1002 A 1 
HETATM 9 H H11 MPD . . . F 3 19.007 27.132 10.418 1 15.71 ? H11 MPD 1002 A 1 
HETATM 10 H H12 MPD . . . F 3 18.856 25.721 11.493 1 15.71 ? H12 MPD 1002 A 1 
HETATM 11 H H13 MPD . . . F 3 19.226 25.489 9.767 1 15.71 ? H13 MPD 1002 A 1 
HETATM 12 H HO2 MPD . . . F 3 21.455 27.61 12.25 1 15.71 ? HO2 MPD 1002 A 1 
HETATM 13 H HM1 MPD . . . F 3 22.623 25.311 10.074 1 15.71 ? HM1 MPD 1002 A 1 
HETATM 14 H HM2 MPD . . . F 3 22.038 26.762 9.224 1 15.71 ? HM2 MPD 1002 A 1 
HETATM 15 H HM3 MPD . . . F 3 21.165 25.22 9.057 1 15.71 ? HM3 MPD 1002 A 1 
HETATM 16 H H31 MPD . . . F 3 22.28 25.35 12.315 1 15.71 ? H31 MPD 1002 A 1 
HETATM 17 H H32 MPD . . . F 3 20.677 25.622 12.995 1 15.71 ? H32 MPD 1002 A 1 
HETATM 18 H H4 MPD . . . F 3 19.809 23.833 11.444 1 15.71 ? H4 MPD 1002 A 1 
HETATM 19 H HO4 MPD . . . F 3 21.419 22.371 10.678 1 15.71 ? HO4 MPD 1002 A 1 
HETATM 20 H H51 MPD . . . F 3 21.965 23.171 13.498 1 15.71 ? H51 MPD 1002 A 1 
HETATM 21 H H52 MPD . . . F 3 20.882 21.944 12.796 1 15.71 ? H52 MPD 1002 A 1 
HETATM 22 H H53 MPD . . . F 3 20.209 23.273 13.771 1 15.71 ? H53 MPD 1002 A 1 
#
_model_server_stats.io_time_ms              36 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    43 
_model_server_stats.query_time_ms           300 
_model_server_stats.encode_time_ms          3 
_model_server_stats.element_count           22 
#