data_8CAV # _model_server_result.job_id i6qVcGcbXY70VOVdLJMx7A _model_server_result.datetime_utc '2024-11-26 14:31:25' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cav # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"G","auth_seq_id":1003}' # _entry.id 8CAV # _exptl.entry_id 8CAV _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 506.196 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 106.25 _cell.angle_gamma 90 _cell.entry_id 8CAV _cell.length_a 84.37 _cell.length_b 116.13 _cell.length_c 97.41 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CAV _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 729 A CYS 729 1_555 A SG CYS 775 A CYS 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 B SG CYS 729 B CYS 729 1_555 B SG CYS 775 B CYS 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? metalc ? metalc1 A OD2 ASP 368 A ASP 368 1_555 H MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? metalc ? metalc2 G O2A ANP . A ANP 1003 1_555 H MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? metalc ? metalc3 J O5' ANP . B ANP 1102 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? # _chem_comp.formula 'C10 H17 N6 O12 P3' _chem_comp.formula_weight 506.196 _chem_comp.id ANP _chem_comp.mon_nstd_flag . _chem_comp.name 'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G ANP doub 13 n n PG O2G ANP sing 14 n n PG O3G ANP sing 15 n n PG N3B ANP sing 16 n n O2G HOG2 ANP sing 17 n n O3G HOG3 ANP sing 18 n n PB O1B ANP doub 19 n n PB O2B ANP sing 20 n n PB N3B ANP sing 21 n n PB O3A ANP sing 22 n n O2B HOB2 ANP sing 23 n n N3B HNB1 ANP sing 24 n n PA O1A ANP doub 25 n n PA O2A ANP sing 26 n n PA O3A ANP sing 27 n n PA O5' ANP sing 28 n n O2A HOA2 ANP sing 29 n n O5' C5' ANP sing 30 n n C5' C4' ANP sing 31 n n C5' "H5'1" ANP sing 32 n n C5' "H5'2" ANP sing 33 n n C4' O4' ANP sing 34 n n C4' C3' ANP sing 35 n n C4' H4' ANP sing 36 n n O4' C1' ANP sing 37 n n C3' O3' ANP sing 38 n n C3' C2' ANP sing 39 n n C3' H3' ANP sing 40 n n O3' HO3' ANP sing 41 n n C2' O2' ANP sing 42 n n C2' C1' ANP sing 43 n n C2' H2' ANP sing 44 n n O2' HO2' ANP sing 45 n n C1' N9 ANP sing 46 n n C1' H1' ANP sing 47 n n N9 C8 ANP sing 48 n y N9 C4 ANP sing 49 n y C8 N7 ANP doub 50 n y C8 H8 ANP sing 51 n n N7 C5 ANP sing 52 n y C5 C6 ANP sing 53 n y C5 C4 ANP doub 54 n y C6 N6 ANP sing 55 n n C6 N1 ANP doub 56 n y N6 HN61 ANP sing 57 n n N6 HN62 ANP sing 58 n n N1 C2 ANP sing 59 n y C2 N3 ANP doub 60 n y C2 H2 ANP sing 61 n n N3 C4 ANP sing 62 n y # _atom_sites.entry_id 8CAV _atom_sites.fract_transf_matrix[1][1] 0.011853 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003455 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008611 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.010693 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 3 MPD A 1 1001 1001 MPD MPD . F 3 MPD A 1 1002 1101 MPD MPD . G 4 ANP A 1 1003 901 ANP ANP . H 5 MG A 1 1004 1 MG MG . I 3 MPD B 1 1101 1101 MPD MPD . J 4 ANP B 1 1102 901 ANP ANP . K 3 MPD B 1 1103 1001 MPD MPD . L 5 MG B 1 1104 2 MG MG . M 6 HOH A 1 1101 10 HOH HOH . M 6 HOH A 2 1102 6 HOH HOH . M 6 HOH A 3 1103 4 HOH HOH . M 6 HOH A 4 1104 7 HOH HOH . M 6 HOH A 5 1105 9 HOH HOH . M 6 HOH A 6 1106 8 HOH HOH . M 6 HOH A 7 1107 1 HOH HOH . M 6 HOH A 8 1108 11 HOH HOH . M 6 HOH A 9 1109 3 HOH HOH . M 6 HOH A 10 1110 12 HOH HOH . M 6 HOH A 11 1111 13 HOH HOH . M 6 HOH A 12 1112 5 HOH HOH . M 6 HOH A 13 1113 14 HOH HOH . N 6 HOH B 1 1201 16 HOH HOH . N 6 HOH B 2 1202 2 HOH HOH . N 6 HOH B 3 1203 15 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG ANP . . . G 4 -38.345 17.339 7.741 1 120.85 ? PG ANP 1003 A 1 HETATM 2 O O1G ANP . . . G 4 -39.737 16.81 7.566 1 86.03 ? O1G ANP 1003 A 1 HETATM 3 O O2G ANP . . . G 4 -38.408 18.885 8.045 1 99.11 ? O2G ANP 1003 A 1 HETATM 4 O O3G ANP . . . G 4 -37.616 16.593 8.932 1 97.51 ? O3G ANP 1003 A 1 HETATM 5 P PB ANP . . . G 4 -37.731 15.474 5.877 1 92.76 ? PB ANP 1003 A 1 HETATM 6 O O1B ANP . . . G 4 -36.518 14.925 5.203 1 81.47 ? O1B ANP 1003 A 1 HETATM 7 O O2B ANP . . . G 4 -38.053 14.619 7.134 1 102.48 ? O2B ANP 1003 A 1 HETATM 8 N N3B ANP . . . G 4 -37.484 17.069 6.311 1 97.63 ? N3B ANP 1003 A 1 HETATM 9 P PA ANP . . . G 4 -38.731 15.585 3.375 1 119.04 ? PA ANP 1003 A 1 HETATM 10 O O1A ANP . . . G 4 -39.989 15.202 2.692 1 93.11 ? O1A ANP 1003 A 1 HETATM 11 O O2A ANP . . . G 4 -38.292 17.024 3.091 1 58.28 ? O2A ANP 1003 A 1 HETATM 12 O O3A ANP . . . G 4 -38.953 15.425 4.924 1 89.39 ? O3A ANP 1003 A 1 HETATM 13 O O5' ANP . . . G 4 -37.562 14.59 2.997 1 82.42 ? O5' ANP 1003 A 1 HETATM 14 C C5' ANP . . . G 4 -37.67 13.987 1.72 1 73.73 ? C5' ANP 1003 A 1 HETATM 15 C C4' ANP . . . G 4 -36.576 14.372 0.755 1 60.58 ? C4' ANP 1003 A 1 HETATM 16 O O4' ANP . . . G 4 -36.742 13.575 -0.44 1 62.42 ? O4' ANP 1003 A 1 HETATM 17 C C3' ANP . . . G 4 -36.565 15.835 0.32 1 65.88 ? C3' ANP 1003 A 1 HETATM 18 O O3' ANP . . . G 4 -35.489 16.52 0.957 1 57.44 ? O3' ANP 1003 A 1 HETATM 19 C C2' ANP . . . G 4 -36.395 15.762 -1.2 1 79.25 ? C2' ANP 1003 A 1 HETATM 20 O O2' ANP . . . G 4 -35.017 15.751 -1.556 1 85.08 ? O2' ANP 1003 A 1 HETATM 21 C C1' ANP . . . G 4 -37.022 14.413 -1.542 1 74.38 ? C1' ANP 1003 A 1 HETATM 22 N N9 ANP . . . G 4 -38.469 14.41 -1.788 1 84 ? N9 ANP 1003 A 1 HETATM 23 C C8 ANP . . . G 4 -39.467 14.317 -0.849 1 78.34 ? C8 ANP 1003 A 1 HETATM 24 N N7 ANP . . . G 4 -40.674 14.319 -1.358 1 71.11 ? N7 ANP 1003 A 1 HETATM 25 C C5 ANP . . . G 4 -40.467 14.406 -2.726 1 68.95 ? C5 ANP 1003 A 1 HETATM 26 C C6 ANP . . . G 4 -41.344 14.451 -3.817 1 67.6 ? C6 ANP 1003 A 1 HETATM 27 N N6 ANP . . . G 4 -42.673 14.411 -3.695 1 71.44 ? N6 ANP 1003 A 1 HETATM 28 N N1 ANP . . . G 4 -40.806 14.54 -5.052 1 71.23 ? N1 ANP 1003 A 1 HETATM 29 C C2 ANP . . . G 4 -39.476 14.577 -5.174 1 73.17 ? C2 ANP 1003 A 1 HETATM 30 N N3 ANP . . . G 4 -38.545 14.542 -4.217 1 77.55 ? N3 ANP 1003 A 1 HETATM 31 C C4 ANP . . . G 4 -39.106 14.456 -3.003 1 78.11 ? C4 ANP 1003 A 1 HETATM 32 H HNB1 ANP . . . G 4 -36.599 17.232 6.437 1 94.82 ? HNB1 ANP 1003 A 1 HETATM 33 H "H5'1" ANP . . . G 4 -37.647 13.022 1.839 1 70.92 ? "H5'1" ANP 1003 A 1 HETATM 34 H "H5'2" ANP . . . G 4 -38.524 14.248 1.334 1 70.92 ? "H5'2" ANP 1003 A 1 HETATM 35 H H4' ANP . . . G 4 -35.686 14.176 1.112 1 57.77 ? H4' ANP 1003 A 1 HETATM 36 H H3' ANP . . . G 4 -37.417 16.234 0.513 1 63.07 ? H3' ANP 1003 A 1 HETATM 37 H HO3' ANP . . . G 4 -35.647 17.391 0.961 1 54.63 ? HO3' ANP 1003 A 1 HETATM 38 H H2' ANP . . . G 4 -36.902 16.462 -1.63 1 76.44 ? H2' ANP 1003 A 1 HETATM 39 H HO2' ANP . . . G 4 -34.836 16.416 -2.114 1 82.27 ? HO2' ANP 1003 A 1 HETATM 40 H H1' ANP . . . G 4 -36.581 14.086 -2.341 1 71.57 ? H1' ANP 1003 A 1 HETATM 41 H H8 ANP . . . G 4 -39.296 14.255 0.089 1 75.53 ? H8 ANP 1003 A 1 HETATM 42 H HN61 ANP . . . G 4 -43.214 14.579 -4.426 1 68.63 ? HN61 ANP 1003 A 1 HETATM 43 H HN62 ANP . . . G 4 -43.049 14.216 -2.884 1 68.63 ? HN62 ANP 1003 A 1 HETATM 44 H H2 ANP . . . G 4 -39.14 14.639 -6.083 1 70.36 ? H2 ANP 1003 A 1 # _model_server_stats.io_time_ms 31 _model_server_stats.parse_time_ms 27 _model_server_stats.create_model_time_ms 23 _model_server_stats.query_time_ms 235 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 44 #