data_8CAV
#
_model_server_result.job_id            6whccBk1OZxAfxwm3aCrLg 
_model_server_result.datetime_utc      '2024-11-26 14:53:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cav 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":1102}' 
#
_entry.id    8CAV 
#
_exptl.entry_id    8CAV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              506.196 
_entity.id                          4 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          106.25 
_cell.angle_gamma         90 
_cell.entry_id            8CAV 
_cell.length_a            84.37 
_cell.length_b            116.13 
_cell.length_c            97.41 
_cell.Z_PDB               4 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CAV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 4 G N N 
? 4 J N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 729 A CYS 729 1_555 A SG CYS 775 A CYS 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? 
disulf ? disulf2 B SG CYS 729 B CYS 729 1_555 B SG CYS 775 B CYS 775 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.038 ? 
metalc ? metalc1 A OD2 ASP 368 A ASP 368 1_555 H MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? 
metalc ? metalc2 G O2A ANP . A ANP 1003 1_555 H MG MG . A MG 1004 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.011 ? 
metalc ? metalc3 J O5' ANP . B ANP 1102 1_555 L MG MG . B MG 1104 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.415 ? 
#
_chem_comp.formula           'C10 H17 N6 O12 P3' 
_chem_comp.formula_weight    506.196 
_chem_comp.id                ANP 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PG O1G ANP doub 13 n n 
PG O2G ANP sing 14 n n 
PG O3G ANP sing 15 n n 
PG N3B ANP sing 16 n n 
O2G HOG2 ANP sing 17 n n 
O3G HOG3 ANP sing 18 n n 
PB O1B ANP doub 19 n n 
PB O2B ANP sing 20 n n 
PB N3B ANP sing 21 n n 
PB O3A ANP sing 22 n n 
O2B HOB2 ANP sing 23 n n 
N3B HNB1 ANP sing 24 n n 
PA O1A ANP doub 25 n n 
PA O2A ANP sing 26 n n 
PA O3A ANP sing 27 n n 
PA O5' ANP sing 28 n n 
O2A HOA2 ANP sing 29 n n 
O5' C5' ANP sing 30 n n 
C5' C4' ANP sing 31 n n 
C5' "H5'1" ANP sing 32 n n 
C5' "H5'2" ANP sing 33 n n 
C4' O4' ANP sing 34 n n 
C4' C3' ANP sing 35 n n 
C4' H4' ANP sing 36 n n 
O4' C1' ANP sing 37 n n 
C3' O3' ANP sing 38 n n 
C3' C2' ANP sing 39 n n 
C3' H3' ANP sing 40 n n 
O3' HO3' ANP sing 41 n n 
C2' O2' ANP sing 42 n n 
C2' C1' ANP sing 43 n n 
C2' H2' ANP sing 44 n n 
O2' HO2' ANP sing 45 n n 
C1' N9 ANP sing 46 n n 
C1' H1' ANP sing 47 n n 
N9 C8 ANP sing 48 n y 
N9 C4 ANP sing 49 n y 
C8 N7 ANP doub 50 n y 
C8 H8 ANP sing 51 n n 
N7 C5 ANP sing 52 n y 
C5 C6 ANP sing 53 n y 
C5 C4 ANP doub 54 n y 
C6 N6 ANP sing 55 n n 
C6 N1 ANP doub 56 n y 
N6 HN61 ANP sing 57 n n 
N6 HN62 ANP sing 58 n n 
N1 C2 ANP sing 59 n y 
C2 N3 ANP doub 60 n y 
C2 H2 ANP sing 61 n n 
N3 C4 ANP sing 62 n y 
#
_atom_sites.entry_id                     8CAV 
_atom_sites.fract_transf_matrix[1][1]    0.011853 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003455 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.008611 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.010693 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 3 MPD A 1 1001 1001 MPD MPD . 
F 3 MPD A 1 1002 1101 MPD MPD . 
G 4 ANP A 1 1003 901 ANP ANP . 
H 5 MG A 1 1004 1 MG MG . 
I 3 MPD B 1 1101 1101 MPD MPD . 
J 4 ANP B 1 1102 901 ANP ANP . 
K 3 MPD B 1 1103 1001 MPD MPD . 
L 5 MG B 1 1104 2 MG MG . 
M 6 HOH A 1 1101 10 HOH HOH . 
M 6 HOH A 2 1102 6 HOH HOH . 
M 6 HOH A 3 1103 4 HOH HOH . 
M 6 HOH A 4 1104 7 HOH HOH . 
M 6 HOH A 5 1105 9 HOH HOH . 
M 6 HOH A 6 1106 8 HOH HOH . 
M 6 HOH A 7 1107 1 HOH HOH . 
M 6 HOH A 8 1108 11 HOH HOH . 
M 6 HOH A 9 1109 3 HOH HOH . 
M 6 HOH A 10 1110 12 HOH HOH . 
M 6 HOH A 11 1111 13 HOH HOH . 
M 6 HOH A 12 1112 5 HOH HOH . 
M 6 HOH A 13 1113 14 HOH HOH . 
N 6 HOH B 1 1201 16 HOH HOH . 
N 6 HOH B 2 1202 2 HOH HOH . 
N 6 HOH B 3 1203 15 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PG ANP . . . J 4 23.499 -12.103 52.702 1 123.21 ? PG ANP 1102 B 1 
HETATM 2 O O1G ANP . . . J 4 24.901 -11.709 53.048 1 99.73 ? O1G ANP 1102 B 1 
HETATM 3 O O2G ANP . . . J 4 22.672 -10.813 52.33 1 110.18 ? O2G ANP 1102 B 1 
HETATM 4 O O3G ANP . . . J 4 23.527 -13.087 51.463 1 106.1 ? O3G ANP 1102 B 1 
HETATM 5 P PB ANP . . . J 4 21.2 -13.289 53.796 1 97.51 ? PB ANP 1102 B 1 
HETATM 6 O O1B ANP . . . J 4 20.966 -13.552 52.345 1 94.87 ? O1B ANP 1102 B 1 
HETATM 7 O O2B ANP . . . J 4 20.271 -12.134 54.273 1 99.73 ? O2B ANP 1102 B 1 
HETATM 8 N N3B ANP . . . J 4 22.812 -12.889 54.038 1 106.21 ? N3B ANP 1102 B 1 
HETATM 9 P PA ANP . . . J 4 20.714 -14.622 56.182 1 77.06 ? PA ANP 1102 B 1 
HETATM 10 O O1A ANP . . . J 4 21.815 -15.345 56.842 1 63.98 ? O1A ANP 1102 B 1 
HETATM 11 O O2A ANP . . . J 4 19.367 -15.304 56.436 1 83.33 ? O2A ANP 1102 B 1 
HETATM 12 O O3A ANP . . . J 4 20.884 -14.591 54.595 1 93.56 ? O3A ANP 1102 B 1 
HETATM 13 O O5' ANP . . . J 4 20.738 -13.124 56.719 1 87.04 ? O5' ANP 1102 B 1 
HETATM 14 C C5' ANP . . . J 4 20.536 -12.814 58.119 1 93.67 ? C5' ANP 1102 B 1 
HETATM 15 C C4' ANP . . . J 4 19.396 -13.647 58.652 1 99.18 ? C4' ANP 1102 B 1 
HETATM 16 O O4' ANP . . . J 4 19.84 -15 58.842 1 98.38 ? O4' ANP 1102 B 1 
HETATM 17 C C3' ANP . . . J 4 18.807 -13.2 59.99 1 82.99 ? C3' ANP 1102 B 1 
HETATM 18 O O3' ANP . . . J 4 17.548 -12.567 59.781 1 82.53 ? O3' ANP 1102 B 1 
HETATM 19 C C2' ANP . . . J 4 18.67 -14.498 60.807 1 83.22 ? C2' ANP 1102 B 1 
HETATM 20 O O2' ANP . . . J 4 17.344 -14.683 61.296 1 81.63 ? O2' ANP 1102 B 1 
HETATM 21 C C1' ANP . . . J 4 19 -15.597 59.799 1 83.43 ? C1' ANP 1102 B 1 
HETATM 22 N N9 ANP . . . J 4 19.701 -16.747 60.354 1 79.85 ? N9 ANP 1102 B 1 
HETATM 23 C C8 ANP . . . J 4 20.563 -17.577 59.689 1 88.23 ? C8 ANP 1102 B 1 
HETATM 24 N N7 ANP . . . J 4 21.062 -18.544 60.423 1 88.29 ? N7 ANP 1102 B 1 
HETATM 25 C C5 ANP . . . J 4 20.48 -18.329 61.665 1 79.46 ? C5 ANP 1102 B 1 
HETATM 26 C C6 ANP . . . J 4 20.597 -19.017 62.893 1 92.82 ? C6 ANP 1102 B 1 
HETATM 27 N N6 ANP . . . J 4 21.366 -20.092 63.073 1 87.73 ? N6 ANP 1102 B 1 
HETATM 28 N N1 ANP . . . J 4 19.885 -18.547 63.942 1 92.11 ? N1 ANP 1102 B 1 
HETATM 29 C C2 ANP . . . J 4 19.115 -17.47 63.767 1 94.67 ? C2 ANP 1102 B 1 
HETATM 30 N N3 ANP . . . J 4 18.926 -16.745 62.661 1 98.54 ? N3 ANP 1102 B 1 
HETATM 31 C C4 ANP . . . J 4 19.644 -17.232 61.642 1 86.15 ? C4 ANP 1102 B 1 
HETATM 32 H HNB1 ANP . . . J 4 23.276 -13.654 54.189 1 102.63 ? HNB1 ANP 1102 B 1 
HETATM 33 H "H5'1" ANP . . . J 4 20.323 -11.87 58.214 1 90.09 ? "H5'1" ANP 1102 B 1 
HETATM 34 H "H5'2" ANP . . . J 4 21.348 -13.016 58.615 1 90.09 ? "H5'2" ANP 1102 B 1 
HETATM 35 H H4' ANP . . . J 4 18.664 -13.681 58.003 1 95.6 ? H4' ANP 1102 B 1 
HETATM 36 H H3' ANP . . . J 4 19.441 -12.629 60.43 1 79.41 ? H3' ANP 1102 B 1 
HETATM 37 H H2' ANP . . . J 4 19.341 -14.506 61.5 1 79.64 ? H2' ANP 1102 B 1 
HETATM 38 H HO2' ANP . . . J 4 17.266 -14.323 62.103 1 78.05 ? HO2' ANP 1102 B 1 
HETATM 39 H H1' ANP . . . J 4 18.166 -15.885 59.394 1 79.85 ? H1' ANP 1102 B 1 
HETATM 40 H H8 ANP . . . J 4 20.784 -17.461 58.766 1 84.65 ? H8 ANP 1102 B 1 
HETATM 41 H HN61 ANP . . . J 4 21.79 -20.484 62.351 1 84.15 ? HN61 ANP 1102 B 1 
HETATM 42 H HN62 ANP . . . J 4 21.477 -20.439 63.912 1 84.15 ? HN62 ANP 1102 B 1 
HETATM 43 H H2 ANP . . . J 4 18.626 -17.173 64.551 1 91.09 ? H2 ANP 1102 B 1 
#
_model_server_stats.io_time_ms              40 
_model_server_stats.parse_time_ms           17 
_model_server_stats.create_model_time_ms    28 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           43 
#