data_8CB0 # _model_server_result.job_id aQaYeO0Qu3ERom4W5I-5bw _model_server_result.datetime_utc '2025-04-10 04:09:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cb0 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":802}' # _entry.id 8CB0 # _exptl.entry_id 8CB0 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 372.417 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 15-(1,4-dioxa-8-azaspiro[4.5]decan-8-yl)-14-azatetracyclo[7.7.1.0^{2,7}.0^{13,17}]heptadeca-1(16),2(7),3,5,9,11,13(17),14-octaen-8-one _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CB0 _cell.length_a 128.683 _cell.length_b 128.683 _cell.length_c 72.106 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CB0 _symmetry.cell_setting ? _symmetry.Int_Tables_number 150 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 3 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C23 H20 N2 O3' _chem_comp.formula_weight 372.417 _chem_comp.id U4F _chem_comp.mon_nstd_flag . _chem_comp.name 15-(1,4-dioxa-8-azaspiro[4.5]decan-8-yl)-14-azatetracyclo[7.7.1.0^{2,7}.0^{13,17}]heptadeca-1(16),2(7),3,5,9,11,13(17),14-octaen-8-one _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag OAA CAB U4F doub 538 n n CAZ CAY U4F sing 539 n y CAZ CBA U4F doub 540 n y CAY CAX U4F doub 541 n y CAB CBA U4F sing 542 n n CAB CAC U4F sing 543 n n CBA CBB U4F sing 544 n y CAX CAW U4F sing 545 n y CAD CAC U4F sing 546 n y CAD CAE U4F doub 547 n y CAC CAH U4F doub 548 n y CBB CAW U4F doub 549 n y CBB CAI U4F sing 550 n y CAW NAV U4F sing 551 n y CAE CAF U4F sing 552 n y CAH CAI U4F sing 553 n n CAH CAG U4F sing 554 n y CAI CAJ U4F doub 555 n y CAF CAG U4F doub 556 n y NAV CAK U4F doub 557 n y CAJ CAK U4F sing 558 n y CAK NAL U4F sing 559 n n NAL CAM U4F sing 560 n n NAL CAQ U4F sing 561 n n CAM CAN U4F sing 562 n n CAQ CAP U4F sing 563 n n CAN CAO U4F sing 564 n n CAP CAO U4F sing 565 n n CAO OAR U4F sing 566 n n CAO OAU U4F sing 567 n n OAR CAS U4F sing 568 n n OAU CAT U4F sing 569 n n CAS CAT U4F sing 570 n n CAS H1 U4F sing 571 n n CAS H2 U4F sing 572 n n CAT H3 U4F sing 573 n n CAT H4 U4F sing 574 n n CAP H5 U4F sing 575 n n CAP H6 U4F sing 576 n n CAQ H7 U4F sing 577 n n CAQ H8 U4F sing 578 n n CAN H9 U4F sing 579 n n CAN H10 U4F sing 580 n n CAM H11 U4F sing 581 n n CAM H12 U4F sing 582 n n CAJ H13 U4F sing 583 n n CAG H14 U4F sing 584 n n CAF H15 U4F sing 585 n n CAE H16 U4F sing 586 n n CAD H17 U4F sing 587 n n CAZ H18 U4F sing 588 n n CAY H19 U4F sing 589 n n CAX H20 U4F sing 590 n n # _atom_sites.entry_id 8CB0 _atom_sites.fract_transf_matrix[1][1] 0.007771 _atom_sites.fract_transf_matrix[1][2] 0.004487 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.008973 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.013868 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 801 801 FAD FAD . C 3 U4F A 1 802 802 U4F LIG . D 4 EDO A 1 803 807 EDO EDO . E 4 EDO A 1 804 808 EDO EDO . F 5 NAP A 1 805 809 NAP NAP . G 6 HOH A 1 901 4 HOH HOH . G 6 HOH A 2 902 91 HOH HOH . G 6 HOH A 3 903 47 HOH HOH . G 6 HOH A 4 904 2 HOH HOH . G 6 HOH A 5 905 1 HOH HOH . G 6 HOH A 6 906 103 HOH HOH . G 6 HOH A 7 907 69 HOH HOH . G 6 HOH A 8 908 104 HOH HOH . G 6 HOH A 9 909 92 HOH HOH . G 6 HOH A 10 910 95 HOH HOH . G 6 HOH A 11 911 87 HOH HOH . G 6 HOH A 12 912 5 HOH HOH . G 6 HOH A 13 913 8 HOH HOH . G 6 HOH A 14 914 101 HOH HOH . G 6 HOH A 15 915 90 HOH HOH . G 6 HOH A 16 916 9 HOH HOH . G 6 HOH A 17 917 23 HOH HOH . G 6 HOH A 18 918 22 HOH HOH . G 6 HOH A 19 919 75 HOH HOH . G 6 HOH A 20 920 29 HOH HOH . G 6 HOH A 21 921 51 HOH HOH . G 6 HOH A 22 922 93 HOH HOH . G 6 HOH A 23 923 13 HOH HOH . G 6 HOH A 24 924 14 HOH HOH . G 6 HOH A 25 925 16 HOH HOH . G 6 HOH A 26 926 31 HOH HOH . G 6 HOH A 27 927 37 HOH HOH . G 6 HOH A 28 928 100 HOH HOH . G 6 HOH A 29 929 27 HOH HOH . G 6 HOH A 30 930 88 HOH HOH . G 6 HOH A 31 931 48 HOH HOH . G 6 HOH A 32 932 30 HOH HOH . G 6 HOH A 33 933 52 HOH HOH . G 6 HOH A 34 934 20 HOH HOH . G 6 HOH A 35 935 38 HOH HOH . G 6 HOH A 36 936 32 HOH HOH . G 6 HOH A 37 937 89 HOH HOH . G 6 HOH A 38 938 97 HOH HOH . G 6 HOH A 39 939 102 HOH HOH . G 6 HOH A 40 940 7 HOH HOH . G 6 HOH A 41 941 86 HOH HOH . G 6 HOH A 42 942 94 HOH HOH . G 6 HOH A 43 943 85 HOH HOH . G 6 HOH A 44 944 61 HOH HOH . G 6 HOH A 45 945 96 HOH HOH . G 6 HOH A 46 946 98 HOH HOH . G 6 HOH A 47 947 84 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAR U4F . . . C 3 32.272 -53.235 36.706 1 138.12 ? OAR U4F 802 A 1 HETATM 2 C CAS U4F . . . C 3 32.527 -53.551 38.051 1 124.16 ? CAS U4F 802 A 1 HETATM 3 C CAT U4F . . . C 3 33.917 -52.922 38.268 1 121.56 ? CAT U4F 802 A 1 HETATM 4 O OAU U4F . . . C 3 34.222 -52.242 37.057 1 129.84 ? OAU U4F 802 A 1 HETATM 5 C CAO U4F . . . C 3 33.551 -53.052 36.08 1 129.97 ? CAO U4F 802 A 1 HETATM 6 C CAP U4F . . . C 3 34.261 -54.437 35.902 1 107.43 ? CAP U4F 802 A 1 HETATM 7 C CAQ U4F . . . C 3 34.253 -54.856 34.414 1 95.53 ? CAQ U4F 802 A 1 HETATM 8 C CAN U4F . . . C 3 33.352 -52.198 34.812 1 123.65 ? CAN U4F 802 A 1 HETATM 9 C CAM U4F . . . C 3 34.62 -52.299 33.993 1 120.53 ? CAM U4F 802 A 1 HETATM 10 N NAL U4F . . . C 3 34.745 -53.739 33.512 1 102.95 ? NAL U4F 802 A 1 HETATM 11 C CAK U4F . . . C 3 35.209 -54.032 32.076 1 86.8 ? CAK U4F 802 A 1 HETATM 12 C CAJ U4F . . . C 3 35.276 -55.363 31.729 1 68.78 ? CAJ U4F 802 A 1 HETATM 13 C CAI U4F . . . C 3 35.678 -55.72 30.436 1 66.68 ? CAI U4F 802 A 1 HETATM 14 C CBB U4F . . . C 3 36.003 -54.817 29.387 1 60.76 ? CBB U4F 802 A 1 HETATM 15 C CAH U4F . . . C 3 35.719 -57.077 30.205 1 67.72 ? CAH U4F 802 A 1 HETATM 16 C CAG U4F . . . C 3 35.357 -57.922 31.279 1 61.42 ? CAG U4F 802 A 1 HETATM 17 C CAF U4F . . . C 3 35.433 -59.281 30.993 1 72.57 ? CAF U4F 802 A 1 HETATM 18 C CAE U4F . . . C 3 35.811 -59.821 29.724 1 66.08 ? CAE U4F 802 A 1 HETATM 19 C CAD U4F . . . C 3 36.148 -58.962 28.664 1 62.2 ? CAD U4F 802 A 1 HETATM 20 C CAC U4F . . . C 3 36.114 -57.566 28.904 1 61.92 ? CAC U4F 802 A 1 HETATM 21 C CAB U4F . . . C 3 36.467 -56.678 27.842 1 67.55 ? CAB U4F 802 A 1 HETATM 22 O OAA U4F . . . C 3 36.8 -57.146 26.726 1 67.02 ? OAA U4F 802 A 1 HETATM 23 C CBA U4F . . . C 3 36.417 -55.276 28.088 1 61.64 ? CBA U4F 802 A 1 HETATM 24 C CAZ U4F . . . C 3 36.748 -54.346 27.055 1 61.79 ? CAZ U4F 802 A 1 HETATM 25 C CAY U4F . . . C 3 36.666 -52.96 27.316 1 64.88 ? CAY U4F 802 A 1 HETATM 26 C CAX U4F . . . C 3 36.264 -52.503 28.612 1 65.06 ? CAX U4F 802 A 1 HETATM 27 C CAW U4F . . . C 3 35.941 -53.435 29.666 1 70.31 ? CAW U4F 802 A 1 HETATM 28 N NAV U4F . . . C 3 35.551 -53.038 31.033 1 81.88 ? NAV U4F 802 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 26 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 392 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 28 #