data_8CB9 # _model_server_result.job_id Eqp7lvPiZyeZmtERSS_aEQ _model_server_result.datetime_utc '2024-11-24 03:54:43' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cb9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8CB9 # _exptl.entry_id 8CB9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 260.136 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-O-phosphono-beta-D-glucopyranose _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CB9 _cell.length_a 42.922 _cell.length_b 59.183 _cell.length_c 183.329 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CB9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C6 H13 O9 P' _chem_comp.formula_weight 260.136 _chem_comp.id BNX _chem_comp.mon_nstd_flag n _chem_comp.name 2-O-phosphono-beta-D-glucopyranose _chem_comp.type 'd-saccharide, beta linking' _chem_comp.pdbx_synonyms 2-O-phosphono-beta-D-glucose;2-O-phosphono-D-glucose;2-O-phosphono-glucose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C6 O6 BNX sing 99 n n C6 C5 BNX sing 100 n n C5 O5 BNX sing 101 n n C5 C4 BNX sing 102 n n O5 C1 BNX sing 103 n n C1 O1 BNX sing 104 n n C1 C2 BNX sing 105 n n O4 C4 BNX sing 106 n n C4 C3 BNX sing 107 n n C3 C2 BNX sing 108 n n C3 O3 BNX sing 109 n n C2 O2 BNX sing 110 n n O2 PAM BNX sing 111 n n PAM OAO BNX doub 112 n n PAM OAN BNX sing 113 n n PAM OAP BNX sing 114 n n OAN H1A BNX sing 115 n n OAP H2A BNX sing 116 n n C2 H2 BNX sing 117 n n C3 H3 BNX sing 118 n n O3 HO3 BNX sing 119 n n C4 H4 BNX sing 120 n n O4 HO4 BNX sing 121 n n C5 H5 BNX sing 122 n n C6 H61 BNX sing 123 n n C6 H62 BNX sing 124 n n O6 HO6 BNX sing 125 n n C1 H1 BNX sing 126 n n O1 HO1 BNX sing 127 n n # _atom_sites.entry_id 8CB9 _atom_sites.fract_transf_matrix[1][1] 0.023298 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.016897 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005455 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 BNX A 1 601 1 BNX MAO . C 3 ALX A 1 602 2 ALX LIG . D 4 HOH A 1 701 64 HOH HOH . D 4 HOH A 2 702 126 HOH HOH . D 4 HOH A 3 703 10 HOH HOH . D 4 HOH A 4 704 47 HOH HOH . D 4 HOH A 5 705 155 HOH HOH . D 4 HOH A 6 706 101 HOH HOH . D 4 HOH A 7 707 2 HOH HOH . D 4 HOH A 8 708 121 HOH HOH . D 4 HOH A 9 709 79 HOH HOH . D 4 HOH A 10 710 120 HOH HOH . D 4 HOH A 11 711 33 HOH HOH . D 4 HOH A 12 712 165 HOH HOH . D 4 HOH A 13 713 134 HOH HOH . D 4 HOH A 14 714 114 HOH HOH . D 4 HOH A 15 715 38 HOH HOH . D 4 HOH A 16 716 27 HOH HOH . D 4 HOH A 17 717 32 HOH HOH . D 4 HOH A 18 718 160 HOH HOH . D 4 HOH A 19 719 42 HOH HOH . D 4 HOH A 20 720 110 HOH HOH . D 4 HOH A 21 721 156 HOH HOH . D 4 HOH A 22 722 66 HOH HOH . D 4 HOH A 23 723 177 HOH HOH . D 4 HOH A 24 724 14 HOH HOH . D 4 HOH A 25 725 88 HOH HOH . D 4 HOH A 26 726 62 HOH HOH . D 4 HOH A 27 727 136 HOH HOH . D 4 HOH A 28 728 98 HOH HOH . D 4 HOH A 29 729 141 HOH HOH . D 4 HOH A 30 730 80 HOH HOH . D 4 HOH A 31 731 83 HOH HOH . D 4 HOH A 32 732 52 HOH HOH . D 4 HOH A 33 733 24 HOH HOH . D 4 HOH A 34 734 35 HOH HOH . D 4 HOH A 35 735 7 HOH HOH . D 4 HOH A 36 736 58 HOH HOH . D 4 HOH A 37 737 23 HOH HOH . D 4 HOH A 38 738 8 HOH HOH . D 4 HOH A 39 739 82 HOH HOH . D 4 HOH A 40 740 16 HOH HOH . D 4 HOH A 41 741 178 HOH HOH . D 4 HOH A 42 742 1 HOH HOH . D 4 HOH A 43 743 50 HOH HOH . D 4 HOH A 44 744 12 HOH HOH . D 4 HOH A 45 745 9 HOH HOH . D 4 HOH A 46 746 86 HOH HOH . D 4 HOH A 47 747 94 HOH HOH . D 4 HOH A 48 748 162 HOH HOH . D 4 HOH A 49 749 17 HOH HOH . D 4 HOH A 50 750 34 HOH HOH . D 4 HOH A 51 751 61 HOH HOH . D 4 HOH A 52 752 71 HOH HOH . D 4 HOH A 53 753 15 HOH HOH . D 4 HOH A 54 754 46 HOH HOH . D 4 HOH A 55 755 74 HOH HOH . D 4 HOH A 56 756 19 HOH HOH . D 4 HOH A 57 757 97 HOH HOH . D 4 HOH A 58 758 11 HOH HOH . D 4 HOH A 59 759 57 HOH HOH . D 4 HOH A 60 760 90 HOH HOH . D 4 HOH A 61 761 48 HOH HOH . D 4 HOH A 62 762 44 HOH HOH . D 4 HOH A 63 763 72 HOH HOH . D 4 HOH A 64 764 89 HOH HOH . D 4 HOH A 65 765 151 HOH HOH . D 4 HOH A 66 766 5 HOH HOH . D 4 HOH A 67 767 119 HOH HOH . D 4 HOH A 68 768 115 HOH HOH . D 4 HOH A 69 769 146 HOH HOH . D 4 HOH A 70 770 159 HOH HOH . D 4 HOH A 71 771 140 HOH HOH . D 4 HOH A 72 772 137 HOH HOH . D 4 HOH A 73 773 143 HOH HOH . D 4 HOH A 74 774 133 HOH HOH . D 4 HOH A 75 775 13 HOH HOH . D 4 HOH A 76 776 21 HOH HOH . D 4 HOH A 77 777 31 HOH HOH . D 4 HOH A 78 778 60 HOH HOH . D 4 HOH A 79 779 171 HOH HOH . D 4 HOH A 80 780 112 HOH HOH . D 4 HOH A 81 781 99 HOH HOH . D 4 HOH A 82 782 69 HOH HOH . D 4 HOH A 83 783 148 HOH HOH . D 4 HOH A 84 784 95 HOH HOH . D 4 HOH A 85 785 174 HOH HOH . D 4 HOH A 86 786 158 HOH HOH . D 4 HOH A 87 787 105 HOH HOH . D 4 HOH A 88 788 91 HOH HOH . D 4 HOH A 89 789 163 HOH HOH . D 4 HOH A 90 790 45 HOH HOH . D 4 HOH A 91 791 109 HOH HOH . D 4 HOH A 92 792 54 HOH HOH . D 4 HOH A 93 793 111 HOH HOH . D 4 HOH A 94 794 77 HOH HOH . D 4 HOH A 95 795 18 HOH HOH . D 4 HOH A 96 796 84 HOH HOH . D 4 HOH A 97 797 25 HOH HOH . D 4 HOH A 98 798 75 HOH HOH . D 4 HOH A 99 799 117 HOH HOH . D 4 HOH A 100 800 3 HOH HOH . D 4 HOH A 101 801 49 HOH HOH . D 4 HOH A 102 802 125 HOH HOH . D 4 HOH A 103 803 39 HOH HOH . D 4 HOH A 104 804 63 HOH HOH . D 4 HOH A 105 805 167 HOH HOH . D 4 HOH A 106 806 30 HOH HOH . D 4 HOH A 107 807 4 HOH HOH . D 4 HOH A 108 808 129 HOH HOH . D 4 HOH A 109 809 169 HOH HOH . D 4 HOH A 110 810 22 HOH HOH . D 4 HOH A 111 811 70 HOH HOH . D 4 HOH A 112 812 29 HOH HOH . D 4 HOH A 113 813 78 HOH HOH . D 4 HOH A 114 814 176 HOH HOH . D 4 HOH A 115 815 81 HOH HOH . D 4 HOH A 116 816 92 HOH HOH . D 4 HOH A 117 817 51 HOH HOH . D 4 HOH A 118 818 138 HOH HOH . D 4 HOH A 119 819 157 HOH HOH . D 4 HOH A 120 820 6 HOH HOH . D 4 HOH A 121 821 118 HOH HOH . D 4 HOH A 122 822 59 HOH HOH . D 4 HOH A 123 823 102 HOH HOH . D 4 HOH A 124 824 68 HOH HOH . D 4 HOH A 125 825 53 HOH HOH . D 4 HOH A 126 826 170 HOH HOH . D 4 HOH A 127 827 37 HOH HOH . D 4 HOH A 128 828 130 HOH HOH . D 4 HOH A 129 829 76 HOH HOH . D 4 HOH A 130 830 135 HOH HOH . D 4 HOH A 131 831 20 HOH HOH . D 4 HOH A 132 832 161 HOH HOH . D 4 HOH A 133 833 107 HOH HOH . D 4 HOH A 134 834 96 HOH HOH . D 4 HOH A 135 835 173 HOH HOH . D 4 HOH A 136 836 132 HOH HOH . D 4 HOH A 137 837 106 HOH HOH . D 4 HOH A 138 838 139 HOH HOH . D 4 HOH A 139 839 172 HOH HOH . D 4 HOH A 140 840 28 HOH HOH . D 4 HOH A 141 841 104 HOH HOH . D 4 HOH A 142 842 179 HOH HOH . D 4 HOH A 143 843 73 HOH HOH . D 4 HOH A 144 844 166 HOH HOH . D 4 HOH A 145 845 87 HOH HOH . D 4 HOH A 146 846 100 HOH HOH . D 4 HOH A 147 847 127 HOH HOH . D 4 HOH A 148 848 103 HOH HOH . D 4 HOH A 149 849 116 HOH HOH . D 4 HOH A 150 850 67 HOH HOH . D 4 HOH A 151 851 113 HOH HOH . D 4 HOH A 152 852 154 HOH HOH . D 4 HOH A 153 853 168 HOH HOH . D 4 HOH A 154 854 149 HOH HOH . D 4 HOH A 155 855 36 HOH HOH . D 4 HOH A 156 856 128 HOH HOH . D 4 HOH A 157 857 55 HOH HOH . D 4 HOH A 158 858 124 HOH HOH . D 4 HOH A 159 859 175 HOH HOH . D 4 HOH A 160 860 145 HOH HOH . D 4 HOH A 161 861 123 HOH HOH . D 4 HOH A 162 862 153 HOH HOH . D 4 HOH A 163 863 144 HOH HOH . D 4 HOH A 164 864 65 HOH HOH . D 4 HOH A 165 865 40 HOH HOH . D 4 HOH A 166 866 26 HOH HOH . D 4 HOH A 167 867 164 HOH HOH . D 4 HOH A 168 868 93 HOH HOH . D 4 HOH A 169 869 150 HOH HOH . D 4 HOH A 170 870 142 HOH HOH . D 4 HOH A 171 871 41 HOH HOH . D 4 HOH A 172 872 131 HOH HOH . D 4 HOH A 173 873 108 HOH HOH . D 4 HOH A 174 874 122 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 O OAN BNX . A . B 2 -7.303 -10.125 15.349 0.5 24.61 ? OAN BNX 601 A 1 HETATM 2 P PAM BNX . A . B 2 -7.352 -8.626 15.121 0.5 25.16 ? PAM BNX 601 A 1 HETATM 3 O OAO BNX . A . B 2 -6.232 -8.126 14.231 0.5 25.09 ? OAO BNX 601 A 1 HETATM 4 O OAP BNX . A . B 2 -8.711 -8.12 14.679 0.5 24.67 ? OAP BNX 601 A 1 HETATM 5 O O2 BNX . A . B 2 -7.104 -8.033 16.608 0.5 24.99 ? O2 BNX 601 A 1 HETATM 6 C C2 BNX . A . B 2 -7.484 -6.702 16.999 0.5 25.35 ? C2 BNX 601 A 1 HETATM 7 C C3 BNX . A . B 2 -6.212 -5.889 17.216 0.5 25.39 ? C3 BNX 601 A 1 HETATM 8 O O3 BNX . A . B 2 -5.574 -5.644 15.964 0.5 25.04 ? O3 BNX 601 A 1 HETATM 9 C C4 BNX . A . B 2 -6.544 -4.565 17.89 0.5 26 ? C4 BNX 601 A 1 HETATM 10 O O4 BNX . A . B 2 -5.362 -3.813 18.142 0.5 26.49 ? O4 BNX 601 A 1 HETATM 11 C C5 BNX . A . B 2 -7.292 -4.841 19.194 0.5 26.14 ? C5 BNX 601 A 1 HETATM 12 C C6 BNX . A . B 2 -7.687 -3.58 19.924 0.5 26.99 ? C6 BNX 601 A 1 HETATM 13 O O6 BNX . A . B 2 -8.367 -2.693 19.04 0.5 27.85 ? O6 BNX 601 A 1 HETATM 14 O O5 BNX . A . B 2 -8.517 -5.542 18.911 0.5 25.54 ? O5 BNX 601 A 1 HETATM 15 C C1 BNX . A . B 2 -8.353 -6.795 18.248 0.5 25.3 ? C1 BNX 601 A 1 HETATM 16 O O1 BNX . A . B 2 -9.524 -7.543 18.272 0.4 24.59 ? O1 BNX 601 A 1 # _model_server_stats.io_time_ms 94 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 224 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 16 #