data_8CBO # _model_server_result.job_id aiFoyr4l30LaoaaZ8nutqQ _model_server_result.datetime_utc '2024-10-19 12:44:19' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"H","auth_seq_id":301}' # _entry.id 8CBO # _exptl.entry_id 8CBO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CBO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 F N1 G 7 T G 2 1_555 F N3 C 72 T C 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 F N2 G 7 T G 2 1_555 F O2 C 72 T C 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 F O6 G 7 T G 2 1_555 F N4 C 72 T C 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 F N1 A 8 T A 3 1_555 F N3 U 71 T U 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 F N6 A 8 T A 3 1_555 F O4 U 71 T U 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-U PAIR' hydrog6 F N1 A 9 T A 4 1_555 F N3 U 70 T U 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 F N1 A 10 T A 5 1_555 F N3 U 69 T U 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 F N6 A 10 T A 5 1_555 F O4 U 69 T U 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog9 F O4 U 11 T U 6 1_555 F N6 A 68 T A 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog10 F N1 A 12 T A 7 1_555 F N6 A 50 T A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 F N3 U 15 T U 10 1_555 F N1 A 26 T A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 F O4 U 15 T U 10 1_555 F N6 A 26 T A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 F N3 C 16 T C 11 1_555 F N1 G 25 T G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 F N4 C 16 T C 11 1_555 F O6 G 25 T G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 F O2 C 16 T C 11 1_555 F N2 G 25 T G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog16 F N3 U 17 T U 12 1_555 F N1 A 24 T A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog17 F N2 G 18 T G 13 1_555 F N1 A 23 T A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 F N1 A 19 T A 14 1_555 F N3 U 49 T U 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 F N6 A 19 T A 14 1_555 F O4 U 49 T U 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 F N3 U 28 T U 23 1_555 F N1 A 44 T A 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 F O4 U 28 T U 23 1_555 F N6 A 44 T A 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 F N3 U 29 T U 24 1_555 F N1 A 43 T A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 F O4 U 29 T U 24 1_555 F N6 A 43 T A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 F N1 A 30 T A 25 1_555 F N3 U 42 T U 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 F N6 A 30 T A 25 1_555 F O4 U 42 T U 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 F N3 C 31 T C 26 1_555 F N1 G 41 T G 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 F N4 C 31 T C 26 1_555 F O6 G 41 T G 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 F O2 C 31 T C 26 1_555 F N2 G 41 T G 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 F N3 U 32 T U 27 1_555 F N1 A 40 T A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 F O4 U 32 T U 27 1_555 F N6 A 40 T A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 F N1 A 50 T A 45 1_555 F N3 U 66 T U 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 F N6 A 50 T A 45 1_555 F O4 U 66 T U 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 F N1 G 51 T G 46 1_555 F N3 C 65 T C 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 F N2 G 51 T G 46 1_555 F O2 C 65 T C 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 F O6 G 51 T G 46 1_555 F N4 C 65 T C 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 F N1 G 52 T G 47 1_555 F N3 C 64 T C 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 F N2 G 52 T G 47 1_555 F O2 C 64 T C 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 F O6 G 52 T G 47 1_555 F N4 C 64 T C 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 F N1 G 54 T G 49 1_555 F N3 C 63 T C 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 F N2 G 54 T G 49 1_555 F O2 C 63 T C 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 F O6 G 54 T G 49 1_555 F N4 C 63 T C 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 350 n n PA O2A NAD sing 351 n n PA O5B NAD sing 352 n n PA O3 NAD sing 353 n n O2A HOA2 NAD sing 354 n n O5B C5B NAD sing 355 n n C5B C4B NAD sing 356 n n C5B H51A NAD sing 357 n n C5B H52A NAD sing 358 n n C4B O4B NAD sing 359 n n C4B C3B NAD sing 360 n n C4B H4B NAD sing 361 n n O4B C1B NAD sing 362 n n C3B O3B NAD sing 363 n n C3B C2B NAD sing 364 n n C3B H3B NAD sing 365 n n O3B HO3A NAD sing 366 n n C2B O2B NAD sing 367 n n C2B C1B NAD sing 368 n n C2B H2B NAD sing 369 n n O2B HO2A NAD sing 370 n n C1B N9A NAD sing 371 n n C1B H1B NAD sing 372 n n N9A C8A NAD sing 373 n y N9A C4A NAD sing 374 n y C8A N7A NAD doub 375 n y C8A H8A NAD sing 376 n n N7A C5A NAD sing 377 n y C5A C6A NAD sing 378 n y C5A C4A NAD doub 379 n y C6A N6A NAD sing 380 n n C6A N1A NAD doub 381 n y N6A H61A NAD sing 382 n n N6A H62A NAD sing 383 n n N1A C2A NAD sing 384 n y C2A N3A NAD doub 385 n y C2A H2A NAD sing 386 n n N3A C4A NAD sing 387 n y O3 PN NAD sing 388 n n PN O1N NAD doub 389 n n PN O2N NAD sing 390 n n PN O5D NAD sing 391 n n O5D C5D NAD sing 392 n n C5D C4D NAD sing 393 n n C5D H51N NAD sing 394 n n C5D H52N NAD sing 395 n n C4D O4D NAD sing 396 n n C4D C3D NAD sing 397 n n C4D H4D NAD sing 398 n n O4D C1D NAD sing 399 n n C3D O3D NAD sing 400 n n C3D C2D NAD sing 401 n n C3D H3D NAD sing 402 n n O3D HO3N NAD sing 403 n n C2D O2D NAD sing 404 n n C2D C1D NAD sing 405 n n C2D H2D NAD sing 406 n n O2D HO2N NAD sing 407 n n C1D N1N NAD sing 408 n n C1D H1D NAD sing 409 n n N1N C2N NAD sing 410 n y N1N C6N NAD doub 411 n y C2N C3N NAD doub 412 n y C2N H2N NAD sing 413 n n C3N C7N NAD sing 414 n n C3N C4N NAD sing 415 n y C7N O7N NAD doub 416 n n C7N N7N NAD sing 417 n n N7N H71N NAD sing 418 n n N7N H72N NAD sing 419 n n C4N C5N NAD doub 420 n y C4N H4N NAD sing 421 n n C5N C6N NAD sing 422 n y C5N H5N NAD sing 423 n n C6N H6N NAD sing 424 n n # _atom_sites.entry_id 8CBO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAD A 1 301 301 NAD NAD . H 4 NAD B 1 301 301 NAD NAD . I 4 NAD C 1 301 301 NAD NAD . J 4 NAD D 1 301 301 NAD NAD . K 5 SAH E 1 401 401 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . H 4 100.764 93.901 128.808 1 129.26 ? PA NAD 301 B 1 HETATM 2 O O1A NAD . . . H 4 101.638 92.78 129.231 1 123.45 ? O1A NAD 301 B 1 HETATM 3 O O2A NAD . . . H 4 99.359 93.936 129.289 1 122.88 ? O2A NAD 301 B 1 HETATM 4 O O5B NAD . . . H 4 100.789 94.025 127.223 1 114.67 ? O5B NAD 301 B 1 HETATM 5 C C5B NAD . . . H 4 101.862 93.4 126.492 1 111.62 ? C5B NAD 301 B 1 HETATM 6 C C4B NAD . . . H 4 101.257 92.54 125.414 1 110.44 ? C4B NAD 301 B 1 HETATM 7 O O4B NAD . . . H 4 102.296 92.074 124.522 1 111.66 ? O4B NAD 301 B 1 HETATM 8 C C3B NAD . . . H 4 100.544 91.274 125.9 1 108.39 ? C3B NAD 301 B 1 HETATM 9 O O3B NAD . . . H 4 99.284 91.16 125.264 1 115.39 ? O3B NAD 301 B 1 HETATM 10 C C2B NAD . . . H 4 101.465 90.153 125.427 1 109.56 ? C2B NAD 301 B 1 HETATM 11 O O2B NAD . . . H 4 100.785 88.953 125.163 1 119.57 ? O2B NAD 301 B 1 HETATM 12 C C1B NAD . . . H 4 101.961 90.769 124.138 1 113.97 ? C1B NAD 301 B 1 HETATM 13 N N9A NAD . . . H 4 103.139 90.127 123.59 1 115.15 ? N9A NAD 301 B 1 HETATM 14 C C8A NAD . . . H 4 104.361 89.985 124.186 1 114.97 ? C8A NAD 301 B 1 HETATM 15 N N7A NAD . . . H 4 105.229 89.364 123.432 1 112.68 ? N7A NAD 301 B 1 HETATM 16 C C5A NAD . . . H 4 104.538 89.091 122.267 1 106.56 ? C5A NAD 301 B 1 HETATM 17 C C6A NAD . . . H 4 104.909 88.451 121.077 1 108.83 ? C6A NAD 301 B 1 HETATM 18 N N6A NAD . . . H 4 106.118 87.953 120.855 1 116.74 ? N6A NAD 301 B 1 HETATM 19 N N1A NAD . . . H 4 103.977 88.345 120.108 1 107.73 ? N1A NAD 301 B 1 HETATM 20 C C2A NAD . . . H 4 102.762 88.846 120.339 1 102.94 ? C2A NAD 301 B 1 HETATM 21 N N3A NAD . . . H 4 102.3 89.467 121.415 1 102.49 ? N3A NAD 301 B 1 HETATM 22 C C4A NAD . . . H 4 103.248 89.557 122.353 1 107.81 ? C4A NAD 301 B 1 HETATM 23 O O3 NAD . . . H 4 101.453 95.269 129.194 1 113.27 ? O3 NAD 301 B 1 HETATM 24 P PN NAD . . . H 4 101.062 96.658 128.549 1 110.29 ? PN NAD 301 B 1 HETATM 25 O O1N NAD . . . H 4 101.322 97.743 129.525 1 117.91 ? O1N NAD 301 B 1 HETATM 26 O O2N NAD . . . H 4 99.71 96.559 127.952 1 116.35 ? O2N NAD 301 B 1 HETATM 27 O O5D NAD . . . H 4 102.124 96.74 127.382 1 110.85 ? O5D NAD 301 B 1 HETATM 28 C C5D NAD . . . H 4 101.86 97.765 126.418 1 114.28 ? C5D NAD 301 B 1 HETATM 29 C C4D NAD . . . H 4 103.164 98.249 125.845 1 113.49 ? C4D NAD 301 B 1 HETATM 30 O O4D NAD . . . H 4 103.473 99.533 126.405 1 113.83 ? O4D NAD 301 B 1 HETATM 31 C C3D NAD . . . H 4 104.382 97.366 126.121 1 112.57 ? C3D NAD 301 B 1 HETATM 32 O O3D NAD . . . H 4 105.217 97.393 124.975 1 117.17 ? O3D NAD 301 B 1 HETATM 33 C C2D NAD . . . H 4 105.031 98.094 127.293 1 113.43 ? C2D NAD 301 B 1 HETATM 34 O O2D NAD . . . H 4 106.41 97.791 127.34 1 118.34 ? O2D NAD 301 B 1 HETATM 35 C C1D NAD . . . H 4 104.767 99.543 126.941 1 111.34 ? C1D NAD 301 B 1 HETATM 36 N N1N NAD . . . H 4 104.713 100.413 128.137 1 104.31 ? N1N NAD 301 B 1 HETATM 37 C C2N NAD . . . H 4 103.875 100.099 129.164 1 106.13 ? C2N NAD 301 B 1 HETATM 38 C C3N NAD . . . H 4 103.786 100.936 130.252 1 102.87 ? C3N NAD 301 B 1 HETATM 39 C C7N NAD . . . H 4 102.874 100.591 131.392 1 110.34 ? C7N NAD 301 B 1 HETATM 40 O O7N NAD . . . H 4 102.59 101.45 132.219 1 117.96 ? O7N NAD 301 B 1 HETATM 41 N N7N NAD . . . H 4 102.371 99.37 131.426 1 113.49 ? N7N NAD 301 B 1 HETATM 42 C C4N NAD . . . H 4 104.525 102.074 130.261 1 106.58 ? C4N NAD 301 B 1 HETATM 43 C C5N NAD . . . H 4 105.345 102.382 129.225 1 110.83 ? C5N NAD 301 B 1 HETATM 44 C C6N NAD . . . H 4 105.435 101.53 128.168 1 108.26 ? C6N NAD 301 B 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 6 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 277 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #