data_8CBO # _model_server_result.job_id lkh4YmnW4B_zSlak8H-bDg _model_server_result.datetime_utc '2024-10-19 12:27:07' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":301}' # _entry.id 8CBO # _exptl.entry_id 8CBO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 663.425 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description NICOTINAMIDE-ADENINE-DINUCLEOTIDE _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CBO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 G N N ? 4 H N N ? 4 I N N ? 4 J N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 F N1 G 7 T G 2 1_555 F N3 C 72 T C 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 F N2 G 7 T G 2 1_555 F O2 C 72 T C 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 F O6 G 7 T G 2 1_555 F N4 C 72 T C 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 F N1 A 8 T A 3 1_555 F N3 U 71 T U 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 F N6 A 8 T A 3 1_555 F O4 U 71 T U 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-U PAIR' hydrog6 F N1 A 9 T A 4 1_555 F N3 U 70 T U 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 F N1 A 10 T A 5 1_555 F N3 U 69 T U 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 F N6 A 10 T A 5 1_555 F O4 U 69 T U 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog9 F O4 U 11 T U 6 1_555 F N6 A 68 T A 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog10 F N1 A 12 T A 7 1_555 F N6 A 50 T A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 F N3 U 15 T U 10 1_555 F N1 A 26 T A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 F O4 U 15 T U 10 1_555 F N6 A 26 T A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 F N3 C 16 T C 11 1_555 F N1 G 25 T G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 F N4 C 16 T C 11 1_555 F O6 G 25 T G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 F O2 C 16 T C 11 1_555 F N2 G 25 T G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog16 F N3 U 17 T U 12 1_555 F N1 A 24 T A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog17 F N2 G 18 T G 13 1_555 F N1 A 23 T A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 F N1 A 19 T A 14 1_555 F N3 U 49 T U 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 F N6 A 19 T A 14 1_555 F O4 U 49 T U 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 F N3 U 28 T U 23 1_555 F N1 A 44 T A 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 F O4 U 28 T U 23 1_555 F N6 A 44 T A 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 F N3 U 29 T U 24 1_555 F N1 A 43 T A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 F O4 U 29 T U 24 1_555 F N6 A 43 T A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 F N1 A 30 T A 25 1_555 F N3 U 42 T U 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 F N6 A 30 T A 25 1_555 F O4 U 42 T U 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 F N3 C 31 T C 26 1_555 F N1 G 41 T G 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 F N4 C 31 T C 26 1_555 F O6 G 41 T G 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 F O2 C 31 T C 26 1_555 F N2 G 41 T G 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 F N3 U 32 T U 27 1_555 F N1 A 40 T A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 F O4 U 32 T U 27 1_555 F N6 A 40 T A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 F N1 A 50 T A 45 1_555 F N3 U 66 T U 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 F N6 A 50 T A 45 1_555 F O4 U 66 T U 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 F N1 G 51 T G 46 1_555 F N3 C 65 T C 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 F N2 G 51 T G 46 1_555 F O2 C 65 T C 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 F O6 G 51 T G 46 1_555 F N4 C 65 T C 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 F N1 G 52 T G 47 1_555 F N3 C 64 T C 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 F N2 G 52 T G 47 1_555 F O2 C 64 T C 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 F O6 G 52 T G 47 1_555 F N4 C 64 T C 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 F N1 G 54 T G 49 1_555 F N3 C 63 T C 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 F N2 G 54 T G 49 1_555 F O2 C 63 T C 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 F O6 G 54 T G 49 1_555 F N4 C 63 T C 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C21 H27 N7 O14 P2' _chem_comp.formula_weight 663.425 _chem_comp.id NAD _chem_comp.mon_nstd_flag . _chem_comp.name NICOTINAMIDE-ADENINE-DINUCLEOTIDE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PA O1A NAD doub 350 n n PA O2A NAD sing 351 n n PA O5B NAD sing 352 n n PA O3 NAD sing 353 n n O2A HOA2 NAD sing 354 n n O5B C5B NAD sing 355 n n C5B C4B NAD sing 356 n n C5B H51A NAD sing 357 n n C5B H52A NAD sing 358 n n C4B O4B NAD sing 359 n n C4B C3B NAD sing 360 n n C4B H4B NAD sing 361 n n O4B C1B NAD sing 362 n n C3B O3B NAD sing 363 n n C3B C2B NAD sing 364 n n C3B H3B NAD sing 365 n n O3B HO3A NAD sing 366 n n C2B O2B NAD sing 367 n n C2B C1B NAD sing 368 n n C2B H2B NAD sing 369 n n O2B HO2A NAD sing 370 n n C1B N9A NAD sing 371 n n C1B H1B NAD sing 372 n n N9A C8A NAD sing 373 n y N9A C4A NAD sing 374 n y C8A N7A NAD doub 375 n y C8A H8A NAD sing 376 n n N7A C5A NAD sing 377 n y C5A C6A NAD sing 378 n y C5A C4A NAD doub 379 n y C6A N6A NAD sing 380 n n C6A N1A NAD doub 381 n y N6A H61A NAD sing 382 n n N6A H62A NAD sing 383 n n N1A C2A NAD sing 384 n y C2A N3A NAD doub 385 n y C2A H2A NAD sing 386 n n N3A C4A NAD sing 387 n y O3 PN NAD sing 388 n n PN O1N NAD doub 389 n n PN O2N NAD sing 390 n n PN O5D NAD sing 391 n n O5D C5D NAD sing 392 n n C5D C4D NAD sing 393 n n C5D H51N NAD sing 394 n n C5D H52N NAD sing 395 n n C4D O4D NAD sing 396 n n C4D C3D NAD sing 397 n n C4D H4D NAD sing 398 n n O4D C1D NAD sing 399 n n C3D O3D NAD sing 400 n n C3D C2D NAD sing 401 n n C3D H3D NAD sing 402 n n O3D HO3N NAD sing 403 n n C2D O2D NAD sing 404 n n C2D C1D NAD sing 405 n n C2D H2D NAD sing 406 n n O2D HO2N NAD sing 407 n n C1D N1N NAD sing 408 n n C1D H1D NAD sing 409 n n N1N C2N NAD sing 410 n y N1N C6N NAD doub 411 n y C2N C3N NAD doub 412 n y C2N H2N NAD sing 413 n n C3N C7N NAD sing 414 n n C3N C4N NAD sing 415 n y C7N O7N NAD doub 416 n n C7N N7N NAD sing 417 n n N7N H71N NAD sing 418 n n N7N H72N NAD sing 419 n n C4N C5N NAD doub 420 n y C4N H4N NAD sing 421 n n C5N C6N NAD sing 422 n y C5N H5N NAD sing 423 n n C6N H6N NAD sing 424 n n # _atom_sites.entry_id 8CBO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAD A 1 301 301 NAD NAD . H 4 NAD B 1 301 301 NAD NAD . I 4 NAD C 1 301 301 NAD NAD . J 4 NAD D 1 301 301 NAD NAD . K 5 SAH E 1 401 401 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PA NAD . . . J 4 127.848 133.891 139.975 1 114.37 ? PA NAD 301 D 1 HETATM 2 O O1A NAD . . . J 4 126.791 134.744 140.572 1 120.01 ? O1A NAD 301 D 1 HETATM 3 O O2A NAD . . . J 4 129.179 133.806 140.629 1 117.61 ? O2A NAD 301 D 1 HETATM 4 O O5B NAD . . . J 4 128.04 134.282 138.444 1 107.59 ? O5B NAD 301 D 1 HETATM 5 C C5B NAD . . . J 4 127.293 135.403 137.931 1 113.16 ? C5B NAD 301 D 1 HETATM 6 C C4B NAD . . . J 4 128.255 136.473 137.485 1 115.64 ? C4B NAD 301 D 1 HETATM 7 O O4B NAD . . . J 4 127.6 137.31 136.501 1 111.58 ? O4B NAD 301 D 1 HETATM 8 C C3B NAD . . . J 4 128.745 137.433 138.574 1 111.15 ? C3B NAD 301 D 1 HETATM 9 O O3B NAD . . . J 4 130.135 137.674 138.437 1 117.23 ? O3B NAD 301 D 1 HETATM 10 C C2B NAD . . . J 4 127.966 138.714 138.284 1 109.11 ? C2B NAD 301 D 1 HETATM 11 O O2B NAD . . . J 4 128.648 139.882 138.668 1 112.36 ? O2B NAD 301 D 1 HETATM 12 C C1B NAD . . . J 4 127.89 138.654 136.773 1 111.13 ? C1B NAD 301 D 1 HETATM 13 N N9A NAD . . . J 4 126.81 139.45 136.229 1 109.85 ? N9A NAD 301 D 1 HETATM 14 C C8A NAD . . . J 4 125.489 139.364 136.568 1 111.63 ? C8A NAD 301 D 1 HETATM 15 N N7A NAD . . . J 4 124.735 140.201 135.906 1 112.99 ? N7A NAD 301 D 1 HETATM 16 C C5A NAD . . . J 4 125.614 140.87 135.075 1 107.25 ? C5A NAD 301 D 1 HETATM 17 C C6A NAD . . . J 4 125.423 141.881 134.124 1 107.65 ? C6A NAD 301 D 1 HETATM 18 N N6A NAD . . . J 4 124.239 142.406 133.843 1 114.99 ? N6A NAD 301 D 1 HETATM 19 N N1A NAD . . . J 4 126.509 142.329 133.461 1 110.82 ? N1A NAD 301 D 1 HETATM 20 C C2A NAD . . . J 4 127.695 141.792 133.756 1 110.56 ? C2A NAD 301 D 1 HETATM 21 N N3A NAD . . . J 4 127.994 140.839 134.63 1 110.66 ? N3A NAD 301 D 1 HETATM 22 C C4A NAD . . . J 4 126.897 140.415 135.264 1 109.26 ? C4A NAD 301 D 1 HETATM 23 O O3 NAD . . . J 4 127.272 132.425 139.84 1 112.08 ? O3 NAD 301 D 1 HETATM 24 P PN NAD . . . J 4 127.771 131.324 138.82 1 115.6 ? PN NAD 301 D 1 HETATM 25 O O1N NAD . . . J 4 127.374 129.981 139.309 1 119.98 ? O1N NAD 301 D 1 HETATM 26 O O2N NAD . . . J 4 129.193 131.582 138.495 1 116.48 ? O2N NAD 301 D 1 HETATM 27 O O5D NAD . . . J 4 126.904 131.695 137.554 1 112.3 ? O5D NAD 301 D 1 HETATM 28 C C5D NAD . . . J 4 127.534 131.413 136.301 1 116.71 ? C5D NAD 301 D 1 HETATM 29 C C4D NAD . . . J 4 126.463 131.128 135.288 1 118.19 ? C4D NAD 301 D 1 HETATM 30 O O4D NAD . . . J 4 126.127 129.737 135.355 1 111.38 ? O4D NAD 301 D 1 HETATM 31 C C3D NAD . . . J 4 125.147 131.885 135.485 1 115.95 ? C3D NAD 301 D 1 HETATM 32 O O3D NAD . . . J 4 124.74 132.384 134.222 1 121.02 ? O3D NAD 301 D 1 HETATM 33 C C2D NAD . . . J 4 124.215 130.782 135.989 1 105.04 ? C2D NAD 301 D 1 HETATM 34 O O2D NAD . . . J 4 122.873 131.043 135.637 1 113.68 ? O2D NAD 301 D 1 HETATM 35 C C1D NAD . . . J 4 124.745 129.571 135.258 1 106.31 ? C1D NAD 301 D 1 HETATM 36 N N1N NAD . . . J 4 124.438 128.305 135.953 1 106.88 ? N1N NAD 301 D 1 HETATM 37 C C2N NAD . . . J 4 124.923 128.104 137.191 1 106.6 ? C2N NAD 301 D 1 HETATM 38 C C3N NAD . . . J 4 124.735 126.935 137.754 1 107.08 ? C3N NAD 301 D 1 HETATM 39 C C7N NAD . . . J 4 125.293 126.704 139.138 1 111.54 ? C7N NAD 301 D 1 HETATM 40 O O7N NAD . . . J 4 125.386 125.556 139.566 1 116.6 ? O7N NAD 301 D 1 HETATM 41 N N7N NAD . . . J 4 125.721 127.758 139.81 1 120.34 ? N7N NAD 301 D 1 HETATM 42 C C4N NAD . . . J 4 124.081 125.963 137.139 1 107.44 ? C4N NAD 301 D 1 HETATM 43 C C5N NAD . . . J 4 123.588 126.133 135.897 1 114.79 ? C5N NAD 301 D 1 HETATM 44 C C6N NAD . . . J 4 123.806 127.332 135.3 1 119.88 ? C6N NAD 301 D 1 # _model_server_stats.io_time_ms 68 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 13 _model_server_stats.query_time_ms 342 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 44 #