data_8CBO # _model_server_result.job_id csjXeugEjpFWWRAz0v5hHA _model_server_result.datetime_utc '2024-10-19 12:43:03' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cbo # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"K","auth_seq_id":401}' # _entry.id 8CBO # _exptl.entry_id 8CBO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 384.411 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CBO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CBO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id K _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order hydrog WATSON-CRICK hydrog1 F N1 G 7 T G 2 1_555 F N3 C 72 T C 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog2 F N2 G 7 T G 2 1_555 F O2 C 72 T C 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog3 F O6 G 7 T G 2 1_555 F N4 C 72 T C 67 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog4 F N1 A 8 T A 3 1_555 F N3 U 71 T U 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog5 F N6 A 8 T A 3 1_555 F O4 U 71 T U 66 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-U PAIR' hydrog6 F N1 A 9 T A 4 1_555 F N3 U 70 T U 65 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog7 F N1 A 10 T A 5 1_555 F N3 U 69 T U 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog8 F N6 A 10 T A 5 1_555 F O4 U 69 T U 64 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog9 F O4 U 11 T U 6 1_555 F N6 A 68 T A 63 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'A-A MISPAIR' hydrog10 F N1 A 12 T A 7 1_555 F N6 A 50 T A 45 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog11 F N3 U 15 T U 10 1_555 F N1 A 26 T A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog12 F O4 U 15 T U 10 1_555 F N6 A 26 T A 21 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog13 F N3 C 16 T C 11 1_555 F N1 G 25 T G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog14 F N4 C 16 T C 11 1_555 F O6 G 25 T G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog15 F O2 C 16 T C 11 1_555 F N2 G 25 T G 20 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'U-A PAIR' hydrog16 F N3 U 17 T U 12 1_555 F N1 A 24 T A 19 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog 'G-A MISPAIR' hydrog17 F N2 G 18 T G 13 1_555 F N1 A 23 T A 18 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog18 F N1 A 19 T A 14 1_555 F N3 U 49 T U 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog19 F N6 A 19 T A 14 1_555 F O4 U 49 T U 44 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog20 F N3 U 28 T U 23 1_555 F N1 A 44 T A 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog21 F O4 U 28 T U 23 1_555 F N6 A 44 T A 39 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog22 F N3 U 29 T U 24 1_555 F N1 A 43 T A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog23 F O4 U 29 T U 24 1_555 F N6 A 43 T A 38 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog24 F N1 A 30 T A 25 1_555 F N3 U 42 T U 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog25 F N6 A 30 T A 25 1_555 F O4 U 42 T U 37 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog26 F N3 C 31 T C 26 1_555 F N1 G 41 T G 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog27 F N4 C 31 T C 26 1_555 F O6 G 41 T G 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog28 F O2 C 31 T C 26 1_555 F N2 G 41 T G 36 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog29 F N3 U 32 T U 27 1_555 F N1 A 40 T A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog30 F O4 U 32 T U 27 1_555 F N6 A 40 T A 35 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog31 F N1 A 50 T A 45 1_555 F N3 U 66 T U 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog32 F N6 A 50 T A 45 1_555 F O4 U 66 T U 61 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog33 F N1 G 51 T G 46 1_555 F N3 C 65 T C 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog34 F N2 G 51 T G 46 1_555 F O2 C 65 T C 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog35 F O6 G 51 T G 46 1_555 F N4 C 65 T C 60 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog36 F N1 G 52 T G 47 1_555 F N3 C 64 T C 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog37 F N2 G 52 T G 47 1_555 F O2 C 64 T C 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog38 F O6 G 52 T G 47 1_555 F N4 C 64 T C 59 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog39 F N1 G 54 T G 49 1_555 F N3 C 63 T C 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog40 F N2 G 54 T G 49 1_555 F O2 C 63 T C 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? hydrog WATSON-CRICK hydrog41 F O6 G 54 T G 49 1_555 F N4 C 63 T C 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? ? ? # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 465 n n N HN1 SAH sing 466 n n N HN2 SAH sing 467 n n CA CB SAH sing 468 n n CA C SAH sing 469 n n CA HA SAH sing 470 n n CB CG SAH sing 471 n n CB HB1 SAH sing 472 n n CB HB2 SAH sing 473 n n CG SD SAH sing 474 n n CG HG1 SAH sing 475 n n CG HG2 SAH sing 476 n n SD C5' SAH sing 477 n n C O SAH doub 478 n n C OXT SAH sing 479 n n OXT HXT SAH sing 480 n n C5' C4' SAH sing 481 n n C5' "H5'1" SAH sing 482 n n C5' "H5'2" SAH sing 483 n n C4' O4' SAH sing 484 n n C4' C3' SAH sing 485 n n C4' H4' SAH sing 486 n n O4' C1' SAH sing 487 n n C3' O3' SAH sing 488 n n C3' C2' SAH sing 489 n n C3' H3' SAH sing 490 n n O3' HO3' SAH sing 491 n n C2' O2' SAH sing 492 n n C2' C1' SAH sing 493 n n C2' H2' SAH sing 494 n n O2' HO2' SAH sing 495 n n C1' N9 SAH sing 496 n n C1' H1' SAH sing 497 n n N9 C8 SAH sing 498 n y N9 C4 SAH sing 499 n y C8 N7 SAH doub 500 n y C8 H8 SAH sing 501 n n N7 C5 SAH sing 502 n y C5 C6 SAH sing 503 n y C5 C4 SAH doub 504 n y C6 N6 SAH sing 505 n n C6 N1 SAH doub 506 n y N6 HN61 SAH sing 507 n n N6 HN62 SAH sing 508 n n N1 C2 SAH sing 509 n y C2 N3 SAH doub 510 n y C2 H2 SAH sing 511 n n N3 C4 SAH sing 512 n y # _atom_sites.entry_id 8CBO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 4 NAD A 1 301 301 NAD NAD . H 4 NAD B 1 301 301 NAD NAD . I 4 NAD C 1 301 301 NAD NAD . J 4 NAD D 1 301 301 NAD NAD . K 5 SAH E 1 401 401 SAH SAH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . K 5 118.431 107.717 65.615 1 129.2 ? N SAH 401 E 1 HETATM 2 C CA SAH . . . K 5 119.052 108.125 66.894 1 128.94 ? CA SAH 401 E 1 HETATM 3 C CB SAH . . . K 5 118.045 108.865 67.771 1 127.8 ? CB SAH 401 E 1 HETATM 4 C CG SAH . . . K 5 118.617 109.975 68.573 1 127.68 ? CG SAH 401 E 1 HETATM 5 S SD SAH . . . K 5 117.369 110.553 69.736 1 132.4 ? SD SAH 401 E 1 HETATM 6 C C SAH . . . K 5 119.49 106.846 67.575 1 130.97 ? C SAH 401 E 1 HETATM 7 O O SAH . . . K 5 120.116 106.009 66.886 1 130.8 ? O SAH 401 E 1 HETATM 8 O OXT SAH . . . K 5 119.149 106.714 68.739 1 132.54 ? OXT SAH 401 E 1 HETATM 9 C C5' SAH . . . K 5 118.184 110.56 71.334 1 122.11 ? C5' SAH 401 E 1 HETATM 10 C C4' SAH . . . K 5 117.769 109.367 72.142 1 119.65 ? C4' SAH 401 E 1 HETATM 11 O O4' SAH . . . K 5 116.448 109.565 72.677 1 119.11 ? O4' SAH 401 E 1 HETATM 12 C C3' SAH . . . K 5 117.642 108.097 71.335 1 121.01 ? C3' SAH 401 E 1 HETATM 13 O O3' SAH . . . K 5 118.941 107.547 71.2 1 133.59 ? O3' SAH 401 E 1 HETATM 14 C C2' SAH . . . K 5 116.774 107.27 72.268 1 120.34 ? C2' SAH 401 E 1 HETATM 15 O O2' SAH . . . K 5 117.536 106.804 73.354 1 126.68 ? O2' SAH 401 E 1 HETATM 16 C C1' SAH . . . K 5 115.803 108.319 72.782 1 118.36 ? C1' SAH 401 E 1 HETATM 17 N N9 SAH . . . K 5 114.568 108.387 72.023 1 117.75 ? N9 SAH 401 E 1 HETATM 18 C C8 SAH . . . K 5 114.139 109.426 71.245 1 123.62 ? C8 SAH 401 E 1 HETATM 19 N N7 SAH . . . K 5 112.974 109.211 70.697 1 121.12 ? N7 SAH 401 E 1 HETATM 20 C C5 SAH . . . K 5 112.616 107.954 71.148 1 112.24 ? C5 SAH 401 E 1 HETATM 21 C C6 SAH . . . K 5 111.483 107.165 70.922 1 114.96 ? C6 SAH 401 E 1 HETATM 22 N N6 SAH . . . K 5 110.47 107.548 70.158 1 126.35 ? N6 SAH 401 E 1 HETATM 23 N N1 SAH . . . K 5 111.429 105.96 71.524 1 122.65 ? N1 SAH 401 E 1 HETATM 24 C C2 SAH . . . K 5 112.454 105.587 72.292 1 122.89 ? C2 SAH 401 E 1 HETATM 25 N N3 SAH . . . K 5 113.571 106.243 72.573 1 120.07 ? N3 SAH 401 E 1 HETATM 26 C C4 SAH . . . K 5 113.591 107.433 71.964 1 114.57 ? C4 SAH 401 E 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 9 _model_server_stats.query_time_ms 318 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #