data_8CBR # _model_server_result.job_id 74LOug3yE07kYMNLGcrRIQ _model_server_result.datetime_utc '2024-11-15 12:53:21' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cbr # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":503}' # _entry.id 8CBR # _exptl.entry_id 8CBR _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.484 _cell.angle_gamma 90 _cell.entry_id 8CBR _cell.length_a 53.221 _cell.length_b 65.172 _cell.length_c 70.474 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CBR _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 F N N ? 3 G N N ? 3 H N N ? 3 L N N ? 3 M N N ? 3 N N N ? 3 O N N ? 3 Q N N ? 3 R N N ? 3 S N N ? 3 T N N ? 3 U N N ? 3 V N N ? 3 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 85 B ASP 64 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.114 ? metalc ? metalc2 B OD2 ASP 137 B ASP 116 1_555 K MG MG . B MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.101 ? metalc ? metalc3 K MG MG . B MG 502 1_555 Y O HOH . B HOH 618 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.107 ? metalc ? metalc4 K MG MG . B MG 502 1_555 Y O HOH . B HOH 629 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? metalc ? metalc5 K MG MG . B MG 502 1_555 Y O HOH . B HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? metalc ? metalc6 K MG MG . B MG 502 1_555 AA O HOH . D HOH 610 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? metalc ? metalc7 D OD1 ASP 85 D ASP 64 1_555 P MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc8 D OD2 ASP 137 D ASP 116 1_555 P MG MG . D MG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.14 ? metalc ? metalc9 P MG MG . D MG 501 1_555 AA O HOH . D HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.119 ? metalc ? metalc10 P MG MG . D MG 501 1_555 AA O HOH . D HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? metalc ? metalc11 P MG MG . D MG 501 1_555 AA O HOH . D HOH 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.912 ? metalc ? metalc12 P MG MG . D MG 501 1_555 AA O HOH . D HOH 670 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.211 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8CBR _atom_sites.fract_transf_matrix[1][1] 0.01879 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003817 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015344 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01448 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 RWR A 1 501 801 RWR LIG . F 3 EDO A 1 502 9 EDO EDO . G 3 EDO A 1 503 11 EDO EDO . H 3 EDO A 1 504 16 EDO EDO . I 4 CL A 1 505 1 CL CL . J 2 RWR B 1 501 801 RWR LIG . K 5 MG B 1 502 1 MG MG . L 3 EDO B 1 503 8 EDO EDO . M 3 EDO B 1 504 10 EDO EDO . N 3 EDO B 1 505 12 EDO EDO . O 3 EDO B 1 506 17 EDO EDO . P 5 MG D 1 501 2 MG MG . Q 3 EDO D 1 502 1 EDO EDO . R 3 EDO D 1 503 3 EDO EDO . S 3 EDO D 1 504 4 EDO EDO . T 3 EDO D 1 505 6 EDO EDO . U 3 EDO D 1 506 13 EDO EDO . V 3 EDO D 1 507 14 EDO EDO . W 3 EDO D 1 508 15 EDO EDO . X 6 HOH A 1 601 149 HOH HOH . X 6 HOH A 2 602 189 HOH HOH . X 6 HOH A 3 603 156 HOH HOH . X 6 HOH A 4 604 81 HOH HOH . X 6 HOH A 5 605 147 HOH HOH . X 6 HOH A 6 606 188 HOH HOH . X 6 HOH A 7 607 203 HOH HOH . X 6 HOH A 8 608 197 HOH HOH . X 6 HOH A 9 609 165 HOH HOH . X 6 HOH A 10 610 194 HOH HOH . X 6 HOH A 11 611 105 HOH HOH . X 6 HOH A 12 612 104 HOH HOH . Y 6 HOH B 1 601 9 HOH HOH . Y 6 HOH B 2 602 17 HOH HOH . Y 6 HOH B 3 603 19 HOH HOH . Y 6 HOH B 4 604 25 HOH HOH . Y 6 HOH B 5 605 185 HOH HOH . Y 6 HOH B 6 606 135 HOH HOH . Y 6 HOH B 7 607 5 HOH HOH . Y 6 HOH B 8 608 34 HOH HOH . Y 6 HOH B 9 609 64 HOH HOH . Y 6 HOH B 10 610 22 HOH HOH . Y 6 HOH B 11 611 99 HOH HOH . Y 6 HOH B 12 612 108 HOH HOH . Y 6 HOH B 13 613 51 HOH HOH . Y 6 HOH B 14 614 201 HOH HOH . Y 6 HOH B 15 615 94 HOH HOH . Y 6 HOH B 16 616 1 HOH HOH . Y 6 HOH B 17 617 50 HOH HOH . Y 6 HOH B 18 618 31 HOH HOH . Y 6 HOH B 19 619 29 HOH HOH . Y 6 HOH B 20 620 137 HOH HOH . Y 6 HOH B 21 621 109 HOH HOH . Y 6 HOH B 22 622 2 HOH HOH . Y 6 HOH B 23 623 4 HOH HOH . Y 6 HOH B 24 624 7 HOH HOH . Y 6 HOH B 25 625 209 HOH HOH . Y 6 HOH B 26 626 166 HOH HOH . Y 6 HOH B 27 627 28 HOH HOH . Y 6 HOH B 28 628 208 HOH HOH . Y 6 HOH B 29 629 30 HOH HOH . Y 6 HOH B 30 630 88 HOH HOH . Y 6 HOH B 31 631 33 HOH HOH . Y 6 HOH B 32 632 3 HOH HOH . Y 6 HOH B 33 633 129 HOH HOH . Y 6 HOH B 34 634 49 HOH HOH . Y 6 HOH B 35 635 35 HOH HOH . Y 6 HOH B 36 636 6 HOH HOH . Y 6 HOH B 37 637 20 HOH HOH . Y 6 HOH B 38 638 192 HOH HOH . Y 6 HOH B 39 639 11 HOH HOH . Y 6 HOH B 40 640 91 HOH HOH . Y 6 HOH B 41 641 24 HOH HOH . Y 6 HOH B 42 642 32 HOH HOH . Y 6 HOH B 43 643 202 HOH HOH . Y 6 HOH B 44 644 96 HOH HOH . Y 6 HOH B 45 645 98 HOH HOH . Y 6 HOH B 46 646 95 HOH HOH . Y 6 HOH B 47 647 18 HOH HOH . Y 6 HOH B 48 648 36 HOH HOH . Y 6 HOH B 49 649 39 HOH HOH . Y 6 HOH B 50 650 48 HOH HOH . Y 6 HOH B 51 651 86 HOH HOH . Y 6 HOH B 52 652 123 HOH HOH . Y 6 HOH B 53 653 92 HOH HOH . Y 6 HOH B 54 654 8 HOH HOH . Y 6 HOH B 55 655 124 HOH HOH . Y 6 HOH B 56 656 127 HOH HOH . Y 6 HOH B 57 657 120 HOH HOH . Y 6 HOH B 58 658 119 HOH HOH . Y 6 HOH B 59 659 106 HOH HOH . Y 6 HOH B 60 660 118 HOH HOH . Y 6 HOH B 61 661 145 HOH HOH . Y 6 HOH B 62 662 168 HOH HOH . Y 6 HOH B 63 663 114 HOH HOH . Y 6 HOH B 64 664 200 HOH HOH . Y 6 HOH B 65 665 21 HOH HOH . Y 6 HOH B 66 666 38 HOH HOH . Y 6 HOH B 67 667 150 HOH HOH . Y 6 HOH B 68 668 191 HOH HOH . Y 6 HOH B 69 669 97 HOH HOH . Y 6 HOH B 70 670 37 HOH HOH . Y 6 HOH B 71 671 176 HOH HOH . Y 6 HOH B 72 672 171 HOH HOH . Y 6 HOH B 73 673 193 HOH HOH . Y 6 HOH B 74 674 182 HOH HOH . Y 6 HOH B 75 675 177 HOH HOH . Y 6 HOH B 76 676 146 HOH HOH . Y 6 HOH B 77 677 199 HOH HOH . Y 6 HOH B 78 678 151 HOH HOH . Y 6 HOH B 79 679 207 HOH HOH . Y 6 HOH B 80 680 169 HOH HOH . Y 6 HOH B 81 681 183 HOH HOH . Y 6 HOH B 82 682 131 HOH HOH . Y 6 HOH B 83 683 170 HOH HOH . Y 6 HOH B 84 684 204 HOH HOH . Y 6 HOH B 85 685 196 HOH HOH . Y 6 HOH B 86 686 122 HOH HOH . Z 6 HOH C 1 501 117 HOH HOH . Z 6 HOH C 2 502 190 HOH HOH . Z 6 HOH C 3 503 87 HOH HOH . Z 6 HOH C 4 504 16 HOH HOH . Z 6 HOH C 5 505 116 HOH HOH . Z 6 HOH C 6 506 102 HOH HOH . Z 6 HOH C 7 507 162 HOH HOH . Z 6 HOH C 8 508 178 HOH HOH . Z 6 HOH C 9 509 103 HOH HOH . Z 6 HOH C 10 510 161 HOH HOH . Z 6 HOH C 11 511 163 HOH HOH . Z 6 HOH C 12 512 160 HOH HOH . Z 6 HOH C 13 513 184 HOH HOH . Z 6 HOH C 14 514 164 HOH HOH . Z 6 HOH C 15 515 142 HOH HOH . Z 6 HOH C 16 516 187 HOH HOH . AA 6 HOH D 1 601 47 HOH HOH . AA 6 HOH D 2 602 60 HOH HOH . AA 6 HOH D 3 603 46 HOH HOH . AA 6 HOH D 4 604 101 HOH HOH . AA 6 HOH D 5 605 148 HOH HOH . AA 6 HOH D 6 606 61 HOH HOH . AA 6 HOH D 7 607 158 HOH HOH . AA 6 HOH D 8 608 55 HOH HOH . AA 6 HOH D 9 609 89 HOH HOH . AA 6 HOH D 10 610 93 HOH HOH . AA 6 HOH D 11 611 111 HOH HOH . AA 6 HOH D 12 612 133 HOH HOH . AA 6 HOH D 13 613 56 HOH HOH . AA 6 HOH D 14 614 59 HOH HOH . AA 6 HOH D 15 615 128 HOH HOH . AA 6 HOH D 16 616 41 HOH HOH . AA 6 HOH D 17 617 15 HOH HOH . AA 6 HOH D 18 618 43 HOH HOH . AA 6 HOH D 19 619 130 HOH HOH . AA 6 HOH D 20 620 42 HOH HOH . AA 6 HOH D 21 621 78 HOH HOH . AA 6 HOH D 22 622 13 HOH HOH . AA 6 HOH D 23 623 12 HOH HOH . AA 6 HOH D 24 624 10 HOH HOH . AA 6 HOH D 25 625 115 HOH HOH . AA 6 HOH D 26 626 90 HOH HOH . AA 6 HOH D 27 627 141 HOH HOH . AA 6 HOH D 28 628 66 HOH HOH . AA 6 HOH D 29 629 14 HOH HOH . AA 6 HOH D 30 630 155 HOH HOH . AA 6 HOH D 31 631 44 HOH HOH . AA 6 HOH D 32 632 75 HOH HOH . AA 6 HOH D 33 633 27 HOH HOH . AA 6 HOH D 34 634 80 HOH HOH . AA 6 HOH D 35 635 153 HOH HOH . AA 6 HOH D 36 636 132 HOH HOH . AA 6 HOH D 37 637 65 HOH HOH . AA 6 HOH D 38 638 174 HOH HOH . AA 6 HOH D 39 639 83 HOH HOH . AA 6 HOH D 40 640 79 HOH HOH . AA 6 HOH D 41 641 62 HOH HOH . AA 6 HOH D 42 642 52 HOH HOH . AA 6 HOH D 43 643 180 HOH HOH . AA 6 HOH D 44 644 157 HOH HOH . AA 6 HOH D 45 645 76 HOH HOH . AA 6 HOH D 46 646 68 HOH HOH . AA 6 HOH D 47 647 112 HOH HOH . AA 6 HOH D 48 648 173 HOH HOH . AA 6 HOH D 49 649 77 HOH HOH . AA 6 HOH D 50 650 121 HOH HOH . AA 6 HOH D 51 651 69 HOH HOH . AA 6 HOH D 52 652 58 HOH HOH . AA 6 HOH D 53 653 205 HOH HOH . AA 6 HOH D 54 654 72 HOH HOH . AA 6 HOH D 55 655 144 HOH HOH . AA 6 HOH D 56 656 67 HOH HOH . AA 6 HOH D 57 657 63 HOH HOH . AA 6 HOH D 58 658 100 HOH HOH . AA 6 HOH D 59 659 206 HOH HOH . AA 6 HOH D 60 660 110 HOH HOH . AA 6 HOH D 61 661 134 HOH HOH . AA 6 HOH D 62 662 126 HOH HOH . AA 6 HOH D 63 663 40 HOH HOH . AA 6 HOH D 64 664 172 HOH HOH . AA 6 HOH D 65 665 186 HOH HOH . AA 6 HOH D 66 666 70 HOH HOH . AA 6 HOH D 67 667 45 HOH HOH . AA 6 HOH D 68 668 136 HOH HOH . AA 6 HOH D 69 669 26 HOH HOH . AA 6 HOH D 70 670 57 HOH HOH . AA 6 HOH D 71 671 140 HOH HOH . AA 6 HOH D 72 672 138 HOH HOH . AA 6 HOH D 73 673 159 HOH HOH . AA 6 HOH D 74 674 154 HOH HOH . AA 6 HOH D 75 675 71 HOH HOH . AA 6 HOH D 76 676 181 HOH HOH . AA 6 HOH D 77 677 179 HOH HOH . AA 6 HOH D 78 678 73 HOH HOH . AA 6 HOH D 79 679 198 HOH HOH . AA 6 HOH D 80 680 167 HOH HOH . AA 6 HOH D 81 681 53 HOH HOH . AA 6 HOH D 82 682 175 HOH HOH . AA 6 HOH D 83 683 113 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . L 3 28.011 0.888 8.161 1 59.67 ? C1 EDO 503 B 1 HETATM 2 O O1 EDO . . . L 3 28.358 -0.114 9.099 1 58.04 ? O1 EDO 503 B 1 HETATM 3 C C2 EDO . . . L 3 29.26 1.446 7.521 1 60.85 ? C2 EDO 503 B 1 HETATM 4 O O2 EDO . . . L 3 30.382 0.655 7.849 1 58.35 ? O2 EDO 503 B 1 # _model_server_stats.io_time_ms 18 _model_server_stats.parse_time_ms 22 _model_server_stats.create_model_time_ms 22 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 4 #