data_8CBS # _model_server_result.job_id ffLEE121aPm6-WPpzDRzjQ _model_server_result.datetime_utc '2024-10-25 20:38:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cbs # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":602}' # _entry.id 8CBS # _exptl.entry_id 8CBS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 62.068 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-ETHANEDIOL _entity.pdbx_number_of_molecules 14 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 101.5 _cell.angle_gamma 90 _cell.entry_id 8CBS _cell.length_a 53.228 _cell.length_b 64.853 _cell.length_c 70.439 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CBS _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,AA _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 E N N ? 2 F N N ? 2 H N N ? 2 I N N ? 2 J N N ? 2 K N N ? 2 N N N ? 2 O N N ? 2 Q N N ? 2 R N N ? 2 S N N ? 2 T N N ? 2 U N N ? 2 W N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 85 B ASP 64 1_555 M MG MG . B MG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.162 ? metalc ? metalc2 B OD2 ASP 137 B ASP 116 1_555 M MG MG . B MG 606 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.163 ? metalc ? metalc3 M MG MG . B MG 606 1_555 Y O HOH . B HOH 721 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? metalc ? metalc4 M MG MG . B MG 606 1_555 Y O HOH . B HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.066 ? metalc ? metalc5 M MG MG . B MG 606 1_555 Y O HOH . B HOH 731 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.977 ? metalc ? metalc6 M MG MG . B MG 606 1_555 AA O HOH . D HOH 411 2_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? metalc ? metalc7 D OD1 ASP 85 D ASP 64 1_555 V MG MG . D MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.19 ? metalc ? metalc8 D OD2 ASP 137 D ASP 116 1_555 V MG MG . D MG 307 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.147 ? metalc ? metalc9 V MG MG . D MG 307 1_555 AA O HOH . D HOH 430 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? metalc ? metalc10 V MG MG . D MG 307 1_555 AA O HOH . D HOH 431 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? metalc ? metalc11 V MG MG . D MG 307 1_555 AA O HOH . D HOH 437 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.975 ? metalc ? metalc12 V MG MG . D MG 307 1_555 AA O HOH . D HOH 470 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.115 ? # _chem_comp.formula 'C2 H6 O2' _chem_comp.formula_weight 62.068 _chem_comp.id EDO _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-ETHANEDIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'ETHYLENE GLYCOL' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 EDO sing 83 n n C1 C2 EDO sing 84 n n C1 H11 EDO sing 85 n n C1 H12 EDO sing 86 n n O1 HO1 EDO sing 87 n n C2 O2 EDO sing 88 n n C2 H21 EDO sing 89 n n C2 H22 EDO sing 90 n n O2 HO2 EDO sing 91 n n # _atom_sites.entry_id 8CBS _atom_sites.fract_transf_matrix[1][1] 0.018787 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003822 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015419 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014488 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 EDO A 1 501 301 EDO EDO . F 2 EDO A 1 502 603 EDO EDO . G 3 CL A 1 503 1 CL CL . H 2 EDO B 1 601 601 EDO EDO . I 2 EDO B 1 602 602 EDO EDO . J 2 EDO B 1 603 604 EDO EDO . K 2 EDO B 1 604 605 EDO EDO . L 4 U5L B 1 605 501 U5L LIG . M 5 MG B 1 606 1 MG MG . N 2 EDO C 1 501 606 EDO EDO . O 2 EDO C 1 502 701 EDO EDO . P 4 U5L D 1 301 301 U5L LIG . Q 2 EDO D 1 302 301 EDO EDO . R 2 EDO D 1 303 401 EDO EDO . S 2 EDO D 1 304 601 EDO EDO . T 2 EDO D 1 305 605 EDO EDO . U 2 EDO D 1 306 702 EDO EDO . V 5 MG D 1 307 2 MG MG . W 2 EDO D 1 308 1 EDO EDO . X 6 HOH A 1 601 225 HOH HOH . X 6 HOH A 2 602 212 HOH HOH . X 6 HOH A 3 603 50 HOH HOH . X 6 HOH A 4 604 119 HOH HOH . X 6 HOH A 5 605 213 HOH HOH . X 6 HOH A 6 606 121 HOH HOH . X 6 HOH A 7 607 123 HOH HOH . X 6 HOH A 8 608 171 HOH HOH . X 6 HOH A 9 609 117 HOH HOH . X 6 HOH A 10 610 208 HOH HOH . X 6 HOH A 11 611 118 HOH HOH . X 6 HOH A 12 612 166 HOH HOH . X 6 HOH A 13 613 214 HOH HOH . X 6 HOH A 14 614 114 HOH HOH . X 6 HOH A 15 615 94 HOH HOH . X 6 HOH A 16 616 181 HOH HOH . X 6 HOH A 17 617 196 HOH HOH . X 6 HOH A 18 618 182 HOH HOH . X 6 HOH A 19 619 236 HOH HOH . X 6 HOH A 20 620 113 HOH HOH . X 6 HOH A 21 621 111 HOH HOH . X 6 HOH A 22 622 215 HOH HOH . X 6 HOH A 23 623 167 HOH HOH . Y 6 HOH B 1 701 188 HOH HOH . Y 6 HOH B 2 702 87 HOH HOH . Y 6 HOH B 3 703 69 HOH HOH . Y 6 HOH B 4 704 83 HOH HOH . Y 6 HOH B 5 705 159 HOH HOH . Y 6 HOH B 6 706 223 HOH HOH . Y 6 HOH B 7 707 49 HOH HOH . Y 6 HOH B 8 708 134 HOH HOH . Y 6 HOH B 9 709 88 HOH HOH . Y 6 HOH B 10 710 200 HOH HOH . Y 6 HOH B 11 711 235 HOH HOH . Y 6 HOH B 12 712 22 HOH HOH . Y 6 HOH B 13 713 29 HOH HOH . Y 6 HOH B 14 714 60 HOH HOH . Y 6 HOH B 15 715 54 HOH HOH . Y 6 HOH B 16 716 36 HOH HOH . Y 6 HOH B 17 717 133 HOH HOH . Y 6 HOH B 18 718 80 HOH HOH . Y 6 HOH B 19 719 131 HOH HOH . Y 6 HOH B 20 720 33 HOH HOH . Y 6 HOH B 21 721 9 HOH HOH . Y 6 HOH B 22 722 4 HOH HOH . Y 6 HOH B 23 723 153 HOH HOH . Y 6 HOH B 24 724 132 HOH HOH . Y 6 HOH B 25 725 55 HOH HOH . Y 6 HOH B 26 726 74 HOH HOH . Y 6 HOH B 27 727 72 HOH HOH . Y 6 HOH B 28 728 7 HOH HOH . Y 6 HOH B 29 729 6 HOH HOH . Y 6 HOH B 30 730 56 HOH HOH . Y 6 HOH B 31 731 10 HOH HOH . Y 6 HOH B 32 732 1 HOH HOH . Y 6 HOH B 33 733 163 HOH HOH . Y 6 HOH B 34 734 51 HOH HOH . Y 6 HOH B 35 735 89 HOH HOH . Y 6 HOH B 36 736 84 HOH HOH . Y 6 HOH B 37 737 77 HOH HOH . Y 6 HOH B 38 738 5 HOH HOH . Y 6 HOH B 39 739 137 HOH HOH . Y 6 HOH B 40 740 66 HOH HOH . Y 6 HOH B 41 741 45 HOH HOH . Y 6 HOH B 42 742 81 HOH HOH . Y 6 HOH B 43 743 129 HOH HOH . Y 6 HOH B 44 744 2 HOH HOH . Y 6 HOH B 45 745 173 HOH HOH . Y 6 HOH B 46 746 146 HOH HOH . Y 6 HOH B 47 747 247 HOH HOH . Y 6 HOH B 48 748 53 HOH HOH . Y 6 HOH B 49 749 73 HOH HOH . Y 6 HOH B 50 750 65 HOH HOH . Y 6 HOH B 51 751 82 HOH HOH . Y 6 HOH B 52 752 44 HOH HOH . Y 6 HOH B 53 753 136 HOH HOH . Y 6 HOH B 54 754 46 HOH HOH . Y 6 HOH B 55 755 158 HOH HOH . Y 6 HOH B 56 756 59 HOH HOH . Y 6 HOH B 57 757 20 HOH HOH . Y 6 HOH B 58 758 130 HOH HOH . Y 6 HOH B 59 759 244 HOH HOH . Y 6 HOH B 60 760 3 HOH HOH . Y 6 HOH B 61 761 217 HOH HOH . Y 6 HOH B 62 762 40 HOH HOH . Y 6 HOH B 63 763 39 HOH HOH . Y 6 HOH B 64 764 218 HOH HOH . Y 6 HOH B 65 765 190 HOH HOH . Y 6 HOH B 66 766 154 HOH HOH . Y 6 HOH B 67 767 30 HOH HOH . Y 6 HOH B 68 768 201 HOH HOH . Y 6 HOH B 69 769 193 HOH HOH . Y 6 HOH B 70 770 35 HOH HOH . Y 6 HOH B 71 771 164 HOH HOH . Y 6 HOH B 72 772 219 HOH HOH . Y 6 HOH B 73 773 79 HOH HOH . Y 6 HOH B 74 774 38 HOH HOH . Y 6 HOH B 75 775 148 HOH HOH . Y 6 HOH B 76 776 37 HOH HOH . Y 6 HOH B 77 777 57 HOH HOH . Y 6 HOH B 78 778 150 HOH HOH . Y 6 HOH B 79 779 199 HOH HOH . Y 6 HOH B 80 780 191 HOH HOH . Y 6 HOH B 81 781 47 HOH HOH . Y 6 HOH B 82 782 192 HOH HOH . Y 6 HOH B 83 783 41 HOH HOH . Y 6 HOH B 84 784 152 HOH HOH . Y 6 HOH B 85 785 198 HOH HOH . Y 6 HOH B 86 786 135 HOH HOH . Y 6 HOH B 87 787 147 HOH HOH . Y 6 HOH B 88 788 245 HOH HOH . Y 6 HOH B 89 789 205 HOH HOH . Y 6 HOH B 90 790 34 HOH HOH . Y 6 HOH B 91 791 58 HOH HOH . Y 6 HOH B 92 792 189 HOH HOH . Y 6 HOH B 93 793 194 HOH HOH . Z 6 HOH C 1 601 230 HOH HOH . Z 6 HOH C 2 602 184 HOH HOH . Z 6 HOH C 3 603 210 HOH HOH . Z 6 HOH C 4 604 85 HOH HOH . Z 6 HOH C 5 605 126 HOH HOH . Z 6 HOH C 6 606 186 HOH HOH . Z 6 HOH C 7 607 125 HOH HOH . Z 6 HOH C 8 608 206 HOH HOH . Z 6 HOH C 9 609 229 HOH HOH . Z 6 HOH C 10 610 128 HOH HOH . Z 6 HOH C 11 611 105 HOH HOH . Z 6 HOH C 12 612 243 HOH HOH . Z 6 HOH C 13 613 233 HOH HOH . Z 6 HOH C 14 614 28 HOH HOH . Z 6 HOH C 15 615 221 HOH HOH . Z 6 HOH C 16 616 248 HOH HOH . Z 6 HOH C 17 617 231 HOH HOH . Z 6 HOH C 18 618 169 HOH HOH . Z 6 HOH C 19 619 238 HOH HOH . Z 6 HOH C 20 620 183 HOH HOH . Z 6 HOH C 21 621 232 HOH HOH . Z 6 HOH C 22 622 237 HOH HOH . AA 6 HOH D 1 401 187 HOH HOH . AA 6 HOH D 2 402 250 HOH HOH . AA 6 HOH D 3 403 70 HOH HOH . AA 6 HOH D 4 404 249 HOH HOH . AA 6 HOH D 5 405 177 HOH HOH . AA 6 HOH D 6 406 142 HOH HOH . AA 6 HOH D 7 407 15 HOH HOH . AA 6 HOH D 8 408 92 HOH HOH . AA 6 HOH D 9 409 239 HOH HOH . AA 6 HOH D 10 410 109 HOH HOH . AA 6 HOH D 11 411 8 HOH HOH . AA 6 HOH D 12 412 178 HOH HOH . AA 6 HOH D 13 413 27 HOH HOH . AA 6 HOH D 14 414 68 HOH HOH . AA 6 HOH D 15 415 16 HOH HOH . AA 6 HOH D 16 416 197 HOH HOH . AA 6 HOH D 17 417 99 HOH HOH . AA 6 HOH D 18 418 76 HOH HOH . AA 6 HOH D 19 419 17 HOH HOH . AA 6 HOH D 20 420 138 HOH HOH . AA 6 HOH D 21 421 18 HOH HOH . AA 6 HOH D 22 422 23 HOH HOH . AA 6 HOH D 23 423 162 HOH HOH . AA 6 HOH D 24 424 42 HOH HOH . AA 6 HOH D 25 425 204 HOH HOH . AA 6 HOH D 26 426 19 HOH HOH . AA 6 HOH D 27 427 220 HOH HOH . AA 6 HOH D 28 428 93 HOH HOH . AA 6 HOH D 29 429 64 HOH HOH . AA 6 HOH D 30 430 13 HOH HOH . AA 6 HOH D 31 431 11 HOH HOH . AA 6 HOH D 32 432 106 HOH HOH . AA 6 HOH D 33 433 48 HOH HOH . AA 6 HOH D 34 434 98 HOH HOH . AA 6 HOH D 35 435 145 HOH HOH . AA 6 HOH D 36 436 31 HOH HOH . AA 6 HOH D 37 437 12 HOH HOH . AA 6 HOH D 38 438 161 HOH HOH . AA 6 HOH D 39 439 174 HOH HOH . AA 6 HOH D 40 440 67 HOH HOH . AA 6 HOH D 41 441 101 HOH HOH . AA 6 HOH D 42 442 43 HOH HOH . AA 6 HOH D 43 443 140 HOH HOH . AA 6 HOH D 44 444 71 HOH HOH . AA 6 HOH D 45 445 103 HOH HOH . AA 6 HOH D 46 446 26 HOH HOH . AA 6 HOH D 47 447 63 HOH HOH . AA 6 HOH D 48 448 95 HOH HOH . AA 6 HOH D 49 449 62 HOH HOH . AA 6 HOH D 50 450 170 HOH HOH . AA 6 HOH D 51 451 202 HOH HOH . AA 6 HOH D 52 452 61 HOH HOH . AA 6 HOH D 53 453 209 HOH HOH . AA 6 HOH D 54 454 21 HOH HOH . AA 6 HOH D 55 455 241 HOH HOH . AA 6 HOH D 56 456 112 HOH HOH . AA 6 HOH D 57 457 91 HOH HOH . AA 6 HOH D 58 458 108 HOH HOH . AA 6 HOH D 59 459 139 HOH HOH . AA 6 HOH D 60 460 24 HOH HOH . AA 6 HOH D 61 461 207 HOH HOH . AA 6 HOH D 62 462 100 HOH HOH . AA 6 HOH D 63 463 102 HOH HOH . AA 6 HOH D 64 464 160 HOH HOH . AA 6 HOH D 65 465 143 HOH HOH . AA 6 HOH D 66 466 151 HOH HOH . AA 6 HOH D 67 467 155 HOH HOH . AA 6 HOH D 68 468 157 HOH HOH . AA 6 HOH D 69 469 216 HOH HOH . AA 6 HOH D 70 470 14 HOH HOH . AA 6 HOH D 71 471 90 HOH HOH . AA 6 HOH D 72 472 176 HOH HOH . AA 6 HOH D 73 473 96 HOH HOH . AA 6 HOH D 74 474 251 HOH HOH . AA 6 HOH D 75 475 25 HOH HOH . AA 6 HOH D 76 476 156 HOH HOH . AA 6 HOH D 77 477 116 HOH HOH . AA 6 HOH D 78 478 168 HOH HOH . AA 6 HOH D 79 479 242 HOH HOH . AA 6 HOH D 80 480 97 HOH HOH . AA 6 HOH D 81 481 104 HOH HOH . AA 6 HOH D 82 482 211 HOH HOH . AA 6 HOH D 83 483 203 HOH HOH . AA 6 HOH D 84 484 32 HOH HOH . AA 6 HOH D 85 485 110 HOH HOH . AA 6 HOH D 86 486 224 HOH HOH . AA 6 HOH D 87 487 144 HOH HOH . AA 6 HOH D 88 488 246 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 EDO . . . I 2 13.797 -14.641 29.285 1 68.58 ? C1 EDO 602 B 1 HETATM 2 O O1 EDO . . . I 2 14.296 -13.519 30.025 1 71.96 ? O1 EDO 602 B 1 HETATM 3 C C2 EDO . . . I 2 13.333 -14.158 27.919 1 59.23 ? C2 EDO 602 B 1 HETATM 4 O O2 EDO . . . I 2 13.023 -15.237 27.035 1 72.53 ? O2 EDO 602 B 1 # _model_server_stats.io_time_ms 17 _model_server_stats.parse_time_ms 28 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 343 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 4 #