data_8CBT
#
_model_server_result.job_id            3G7TFWexUKBa0FtDR4W5yw 
_model_server_result.datetime_utc      '2024-10-25 20:32:19' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cbt 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"J","auth_seq_id":502}' 
#
_entry.id    8CBT 
#
_exptl.entry_id    8CBT 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    5 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.66 
_cell.angle_gamma         90 
_cell.entry_id            8CBT 
_cell.length_a            53.306 
_cell.length_b            64.47 
_cell.length_c            70.702 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CBT 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 F N N 
? 3 G N N 
? 3 J N N 
? 3 M N N 
? 3 N N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 85 B ASP 64 1_555 H MG MG . B MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc2 B OD2 ASP 137 B ASP 116 1_555 H MG MG . B MG 804 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
metalc ? metalc3 H MG MG . B MG 804 1_555 T O HOH . B HOH 913 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.079 ? 
metalc ? metalc4 H MG MG . B MG 804 1_555 T O HOH . B HOH 917 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? 
metalc ? metalc5 H MG MG . B MG 804 1_555 T O HOH . B HOH 928 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.194 ? 
metalc ? metalc6 H MG MG . B MG 804 1_555 T O HOH . B HOH 940 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.117 ? 
metalc ? metalc7 D OD1 ASP 85 D ASP 64 1_555 R MG MG . D MG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.076 ? 
metalc ? metalc8 D OD2 ASP 137 D ASP 116 1_555 R MG MG . D MG 807 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.085 ? 
metalc ? metalc9 R MG MG . D MG 807 1_555 V O HOH . D HOH 903 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.089 ? 
metalc ? metalc10 R MG MG . D MG 807 1_555 V O HOH . D HOH 912 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.112 ? 
metalc ? metalc11 R MG MG . D MG 807 1_555 V O HOH . D HOH 936 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.102 ? 
metalc ? metalc12 R MG MG . D MG 807 1_555 V O HOH . D HOH 945 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8CBT 
_atom_sites.fract_transf_matrix[1][1]    0.01876 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003871 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015511 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014442 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 W2Q B 1 801 801 W2Q LIG . 
F 3 EDO B 1 802 301 EDO EDO . 
G 3 EDO B 1 803 401 EDO EDO . 
H 4 MG B 1 804 1 MG MG . 
I 5 PEG C 1 501 301 PEG PEG . 
J 3 EDO C 1 502 402 EDO EDO . 
K 6 CL C 1 503 1 CL CL . 
L 2 W2Q D 1 801 801 W2Q LIG . 
M 3 EDO D 1 802 301 EDO EDO . 
N 3 EDO D 1 803 303 EDO EDO . 
O 5 PEG D 1 804 305 PEG PEG . 
P 5 PEG D 1 805 501 PEG PEG . 
Q 5 PEG D 1 806 502 PEG PEG . 
R 4 MG D 1 807 2 MG MG . 
S 7 HOH A 1 501 88 HOH HOH . 
S 7 HOH A 2 502 74 HOH HOH . 
S 7 HOH A 3 503 73 HOH HOH . 
S 7 HOH A 4 504 87 HOH HOH . 
S 7 HOH A 5 505 148 HOH HOH . 
S 7 HOH A 6 506 103 HOH HOH . 
S 7 HOH A 7 507 89 HOH HOH . 
S 7 HOH A 8 508 121 HOH HOH . 
S 7 HOH A 9 509 80 HOH HOH . 
S 7 HOH A 10 510 48 HOH HOH . 
S 7 HOH A 11 511 124 HOH HOH . 
S 7 HOH A 12 512 86 HOH HOH . 
S 7 HOH A 13 513 149 HOH HOH . 
T 7 HOH B 1 901 130 HOH HOH . 
T 7 HOH B 2 902 128 HOH HOH . 
T 7 HOH B 3 903 51 HOH HOH . 
T 7 HOH B 4 904 97 HOH HOH . 
T 7 HOH B 5 905 10 HOH HOH . 
T 7 HOH B 6 906 61 HOH HOH . 
T 7 HOH B 7 907 72 HOH HOH . 
T 7 HOH B 8 908 28 HOH HOH . 
T 7 HOH B 9 909 22 HOH HOH . 
T 7 HOH B 10 910 125 HOH HOH . 
T 7 HOH B 11 911 142 HOH HOH . 
T 7 HOH B 12 912 6 HOH HOH . 
T 7 HOH B 13 913 3 HOH HOH . 
T 7 HOH B 14 914 115 HOH HOH . 
T 7 HOH B 15 915 133 HOH HOH . 
T 7 HOH B 16 916 26 HOH HOH . 
T 7 HOH B 17 917 2 HOH HOH . 
T 7 HOH B 18 918 23 HOH HOH . 
T 7 HOH B 19 919 52 HOH HOH . 
T 7 HOH B 20 920 53 HOH HOH . 
T 7 HOH B 21 921 16 HOH HOH . 
T 7 HOH B 22 922 93 HOH HOH . 
T 7 HOH B 23 923 143 HOH HOH . 
T 7 HOH B 24 924 5 HOH HOH . 
T 7 HOH B 25 925 109 HOH HOH . 
T 7 HOH B 26 926 107 HOH HOH . 
T 7 HOH B 27 927 65 HOH HOH . 
T 7 HOH B 28 928 1 HOH HOH . 
T 7 HOH B 29 929 11 HOH HOH . 
T 7 HOH B 30 930 63 HOH HOH . 
T 7 HOH B 31 931 92 HOH HOH . 
T 7 HOH B 32 932 110 HOH HOH . 
T 7 HOH B 33 933 7 HOH HOH . 
T 7 HOH B 34 934 21 HOH HOH . 
T 7 HOH B 35 935 39 HOH HOH . 
T 7 HOH B 36 936 77 HOH HOH . 
T 7 HOH B 37 937 79 HOH HOH . 
T 7 HOH B 38 938 9 HOH HOH . 
T 7 HOH B 39 939 4 HOH HOH . 
T 7 HOH B 40 940 50 HOH HOH . 
T 7 HOH B 41 941 29 HOH HOH . 
T 7 HOH B 42 942 18 HOH HOH . 
T 7 HOH B 43 943 24 HOH HOH . 
T 7 HOH B 44 944 54 HOH HOH . 
T 7 HOH B 45 945 12 HOH HOH . 
T 7 HOH B 46 946 137 HOH HOH . 
T 7 HOH B 47 947 25 HOH HOH . 
T 7 HOH B 48 948 99 HOH HOH . 
T 7 HOH B 49 949 30 HOH HOH . 
T 7 HOH B 50 950 64 HOH HOH . 
T 7 HOH B 51 951 102 HOH HOH . 
T 7 HOH B 52 952 82 HOH HOH . 
T 7 HOH B 53 953 81 HOH HOH . 
T 7 HOH B 54 954 104 HOH HOH . 
T 7 HOH B 55 955 78 HOH HOH . 
T 7 HOH B 56 956 113 HOH HOH . 
T 7 HOH B 57 957 154 HOH HOH . 
T 7 HOH B 58 958 91 HOH HOH . 
T 7 HOH B 59 959 98 HOH HOH . 
T 7 HOH B 60 960 62 HOH HOH . 
T 7 HOH B 61 961 119 HOH HOH . 
T 7 HOH B 62 962 131 HOH HOH . 
T 7 HOH B 63 963 120 HOH HOH . 
T 7 HOH B 64 964 106 HOH HOH . 
T 7 HOH B 65 965 150 HOH HOH . 
T 7 HOH B 66 966 27 HOH HOH . 
T 7 HOH B 67 967 94 HOH HOH . 
T 7 HOH B 68 968 105 HOH HOH . 
T 7 HOH B 69 969 100 HOH HOH . 
U 7 HOH C 1 601 126 HOH HOH . 
U 7 HOH C 2 602 90 HOH HOH . 
U 7 HOH C 3 603 68 HOH HOH . 
U 7 HOH C 4 604 127 HOH HOH . 
U 7 HOH C 5 605 47 HOH HOH . 
U 7 HOH C 6 606 151 HOH HOH . 
U 7 HOH C 7 607 160 HOH HOH . 
U 7 HOH C 8 608 14 HOH HOH . 
U 7 HOH C 9 609 76 HOH HOH . 
U 7 HOH C 10 610 164 HOH HOH . 
V 7 HOH D 1 901 17 HOH HOH . 
V 7 HOH D 2 902 40 HOH HOH . 
V 7 HOH D 3 903 35 HOH HOH . 
V 7 HOH D 4 904 141 HOH HOH . 
V 7 HOH D 5 905 132 HOH HOH . 
V 7 HOH D 6 906 67 HOH HOH . 
V 7 HOH D 7 907 34 HOH HOH . 
V 7 HOH D 8 908 140 HOH HOH . 
V 7 HOH D 9 909 15 HOH HOH . 
V 7 HOH D 10 910 96 HOH HOH . 
V 7 HOH D 11 911 57 HOH HOH . 
V 7 HOH D 12 912 36 HOH HOH . 
V 7 HOH D 13 913 8 HOH HOH . 
V 7 HOH D 14 914 19 HOH HOH . 
V 7 HOH D 15 915 13 HOH HOH . 
V 7 HOH D 16 916 69 HOH HOH . 
V 7 HOH D 17 917 138 HOH HOH . 
V 7 HOH D 18 918 101 HOH HOH . 
V 7 HOH D 19 919 114 HOH HOH . 
V 7 HOH D 20 920 117 HOH HOH . 
V 7 HOH D 21 921 83 HOH HOH . 
V 7 HOH D 22 922 43 HOH HOH . 
V 7 HOH D 23 923 20 HOH HOH . 
V 7 HOH D 24 924 31 HOH HOH . 
V 7 HOH D 25 925 37 HOH HOH . 
V 7 HOH D 26 926 45 HOH HOH . 
V 7 HOH D 27 927 116 HOH HOH . 
V 7 HOH D 28 928 112 HOH HOH . 
V 7 HOH D 29 929 108 HOH HOH . 
V 7 HOH D 30 930 157 HOH HOH . 
V 7 HOH D 31 931 135 HOH HOH . 
V 7 HOH D 32 932 56 HOH HOH . 
V 7 HOH D 33 933 153 HOH HOH . 
V 7 HOH D 34 934 55 HOH HOH . 
V 7 HOH D 35 935 85 HOH HOH . 
V 7 HOH D 36 936 38 HOH HOH . 
V 7 HOH D 37 937 44 HOH HOH . 
V 7 HOH D 38 938 66 HOH HOH . 
V 7 HOH D 39 939 123 HOH HOH . 
V 7 HOH D 40 940 161 HOH HOH . 
V 7 HOH D 41 941 144 HOH HOH . 
V 7 HOH D 42 942 41 HOH HOH . 
V 7 HOH D 43 943 152 HOH HOH . 
V 7 HOH D 44 944 46 HOH HOH . 
V 7 HOH D 45 945 159 HOH HOH . 
V 7 HOH D 46 946 129 HOH HOH . 
V 7 HOH D 47 947 111 HOH HOH . 
V 7 HOH D 48 948 42 HOH HOH . 
V 7 HOH D 49 949 158 HOH HOH . 
V 7 HOH D 50 950 134 HOH HOH . 
V 7 HOH D 51 951 58 HOH HOH . 
V 7 HOH D 52 952 60 HOH HOH . 
V 7 HOH D 53 953 84 HOH HOH . 
V 7 HOH D 54 954 118 HOH HOH . 
V 7 HOH D 55 955 32 HOH HOH . 
V 7 HOH D 56 956 147 HOH HOH . 
V 7 HOH D 57 957 71 HOH HOH . 
V 7 HOH D 58 958 59 HOH HOH . 
V 7 HOH D 59 959 122 HOH HOH . 
V 7 HOH D 60 960 156 HOH HOH . 
V 7 HOH D 61 961 136 HOH HOH . 
V 7 HOH D 62 962 146 HOH HOH . 
V 7 HOH D 63 963 162 HOH HOH . 
V 7 HOH D 64 964 95 HOH HOH . 
V 7 HOH D 65 965 155 HOH HOH . 
V 7 HOH D 66 966 163 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . J 3 0.505 -17.189 -14.287 1 84.68 ? C1 EDO 502 C 1 
HETATM 2 O O1 EDO . . . J 3 0.71 -18.291 -13.396 1 85.53 ? O1 EDO 502 C 1 
HETATM 3 C C2 EDO . . . J 3 -0.77 -16.453 -13.896 1 90.97 ? C2 EDO 502 C 1 
HETATM 4 O O2 EDO . . . J 3 -0.626 -15.92 -12.574 1 87.02 ? O2 EDO 502 C 1 
#
_model_server_stats.io_time_ms              107 
_model_server_stats.parse_time_ms           21 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          4 
_model_server_stats.element_count           4 
#