data_8CBU # _model_server_result.job_id EymcmkODOTxPBpn0ol6oJg _model_server_result.datetime_utc '2024-11-15 11:33:45' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cbu # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"J","auth_seq_id":505}' # _entry.id 8CBU # _exptl.entry_id 8CBU _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 392.487 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-[3-cyclopropyl-6-methyl-2-(5-methyl-3,4-dihydro-2H-chromen-6-yl)phenyl]-2-cyclopropyloxy-ethanoic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.72 _cell.angle_gamma 90 _cell.entry_id 8CBU _cell.length_a 52.847 _cell.length_b 63.559 _cell.length_c 69.596 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CBU _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall 'P 2yb' _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 J N N ? 4 M N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B OD1 ASP 85 B ASP 64 1_555 K MG MG . B MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.072 ? metalc ? metalc2 B OD2 ASP 137 B ASP 116 1_555 K MG MG . B MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc3 K MG MG . B MG 506 1_555 S O HOH . B HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.179 ? metalc ? metalc4 K MG MG . B MG 506 1_555 S O HOH . B HOH 613 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? metalc ? metalc5 K MG MG . B MG 506 1_555 S O HOH . B HOH 621 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.212 ? metalc ? metalc6 K MG MG . B MG 506 1_555 S O HOH . B HOH 642 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.152 ? metalc ? metalc7 D OD1 ASP 85 D ASP 64 1_555 Q MG MG . D MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.094 ? metalc ? metalc8 D OD2 ASP 137 D ASP 116 1_555 Q MG MG . D MG 605 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.06 ? metalc ? metalc9 Q MG MG . D MG 605 1_555 U O HOH . D HOH 715 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.173 ? metalc ? metalc10 Q MG MG . D MG 605 1_555 U O HOH . D HOH 720 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.092 ? metalc ? metalc11 Q MG MG . D MG 605 1_555 U O HOH . D HOH 728 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.203 ? metalc ? metalc12 Q MG MG . D MG 605 1_555 U O HOH . D HOH 741 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.129 ? # _chem_comp.formula 'C25 H28 O4' _chem_comp.formula_weight 392.487 _chem_comp.id U60 _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-[3-cyclopropyl-6-methyl-2-(5-methyl-3,4-dihydro-2H-chromen-6-yl)phenyl]-2-cyclopropyloxy-ethanoic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C29 C21 U60 sing 390 n n C29 C28 U60 sing 391 n n O20 C21 U60 sing 392 n n O20 C18 U60 sing 393 n n C17 C15 U60 sing 394 n n C21 C28 U60 sing 395 n n O22 C19 U60 doub 396 n n C19 C18 U60 sing 397 n n C19 O23 U60 sing 398 n n C18 C16 U60 sing 399 n n C15 C16 U60 doub 400 n y C15 C14 U60 sing 401 n y C16 C11 U60 sing 402 n y C14 C13 U60 doub 403 n y C11 C03 U60 sing 404 n n C11 C12 U60 doub 405 n y C13 C12 U60 sing 406 n y C04 C03 U60 doub 407 n y C04 C05 U60 sing 408 n y C03 C02 U60 sing 409 n y C12 C24 U60 sing 410 n n C05 C06 U60 doub 411 n y C02 C27 U60 sing 412 n n C02 C01 U60 doub 413 n y C06 C01 U60 sing 414 n y C06 O07 U60 sing 415 n n C01 C10 U60 sing 416 n n C24 C26 U60 sing 417 n n C24 C25 U60 sing 418 n n O07 C08 U60 sing 419 n n C08 C09 U60 sing 420 n n C10 C09 U60 sing 421 n n C26 C25 U60 sing 422 n n C10 H1 U60 sing 423 n n C10 H2 U60 sing 424 n n C13 H3 U60 sing 425 n n C17 H4 U60 sing 426 n n C17 H5 U60 sing 427 n n C17 H6 U60 sing 428 n n C21 H7 U60 sing 429 n n C24 H8 U60 sing 430 n n C26 H9 U60 sing 431 n n C26 H10 U60 sing 432 n n C28 H11 U60 sing 433 n n C28 H12 U60 sing 434 n n C04 H13 U60 sing 435 n n C05 H14 U60 sing 436 n n C08 H15 U60 sing 437 n n C08 H16 U60 sing 438 n n C09 H17 U60 sing 439 n n C09 H18 U60 sing 440 n n C14 H19 U60 sing 441 n n C18 H20 U60 sing 442 n n C25 H21 U60 sing 443 n n C25 H22 U60 sing 444 n n C27 H23 U60 sing 445 n n C27 H24 U60 sing 446 n n C27 H25 U60 sing 447 n n C29 H26 U60 sing 448 n n C29 H27 U60 sing 449 n n O23 H28 U60 sing 450 n n # _atom_sites.entry_id 8CBU _atom_sites.fract_transf_matrix[1][1] 0.018923 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003582 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.015733 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.014624 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code E 2 CL A 1 501 1 CL CL . F 3 EDO B 1 501 501 EDO EDO . G 3 EDO B 1 502 801 EDO EDO . H 3 EDO B 1 503 902 EDO EDO . I 3 EDO B 1 504 903 EDO EDO . J 4 U60 B 1 505 401 U60 LIG . K 5 MG B 1 506 1 MG MG . L 3 EDO C 1 501 905 EDO EDO . M 4 U60 D 1 601 601 U60 LIG . N 6 PGE D 1 602 402 PGE PGE . O 3 EDO D 1 603 901 EDO EDO . P 3 EDO D 1 604 904 EDO EDO . Q 5 MG D 1 605 2 MG MG . R 7 HOH A 1 601 123 HOH HOH . R 7 HOH A 2 602 36 HOH HOH . R 7 HOH A 3 603 89 HOH HOH . R 7 HOH A 4 604 114 HOH HOH . R 7 HOH A 5 605 101 HOH HOH . R 7 HOH A 6 606 103 HOH HOH . R 7 HOH A 7 607 105 HOH HOH . R 7 HOH A 8 608 104 HOH HOH . S 7 HOH B 1 601 86 HOH HOH . S 7 HOH B 2 602 19 HOH HOH . S 7 HOH B 3 603 73 HOH HOH . S 7 HOH B 4 604 21 HOH HOH . S 7 HOH B 5 605 90 HOH HOH . S 7 HOH B 6 606 115 HOH HOH . S 7 HOH B 7 607 10 HOH HOH . S 7 HOH B 8 608 9 HOH HOH . S 7 HOH B 9 609 48 HOH HOH . S 7 HOH B 10 610 14 HOH HOH . S 7 HOH B 11 611 18 HOH HOH . S 7 HOH B 12 612 3 HOH HOH . S 7 HOH B 13 613 12 HOH HOH . S 7 HOH B 14 614 119 HOH HOH . S 7 HOH B 15 615 56 HOH HOH . S 7 HOH B 16 616 110 HOH HOH . S 7 HOH B 17 617 57 HOH HOH . S 7 HOH B 18 618 4 HOH HOH . S 7 HOH B 19 619 2 HOH HOH . S 7 HOH B 20 620 92 HOH HOH . S 7 HOH B 21 621 13 HOH HOH . S 7 HOH B 22 622 71 HOH HOH . S 7 HOH B 23 623 47 HOH HOH . S 7 HOH B 24 624 1 HOH HOH . S 7 HOH B 25 625 88 HOH HOH . S 7 HOH B 26 626 111 HOH HOH . S 7 HOH B 27 627 62 HOH HOH . S 7 HOH B 28 628 7 HOH HOH . S 7 HOH B 29 629 5 HOH HOH . S 7 HOH B 30 630 85 HOH HOH . S 7 HOH B 31 631 75 HOH HOH . S 7 HOH B 32 632 72 HOH HOH . S 7 HOH B 33 633 6 HOH HOH . S 7 HOH B 34 634 64 HOH HOH . S 7 HOH B 35 635 63 HOH HOH . S 7 HOH B 36 636 61 HOH HOH . S 7 HOH B 37 637 93 HOH HOH . S 7 HOH B 38 638 39 HOH HOH . S 7 HOH B 39 639 94 HOH HOH . S 7 HOH B 40 640 59 HOH HOH . S 7 HOH B 41 641 87 HOH HOH . S 7 HOH B 42 642 11 HOH HOH . S 7 HOH B 43 643 84 HOH HOH . S 7 HOH B 44 644 54 HOH HOH . S 7 HOH B 45 645 42 HOH HOH . S 7 HOH B 46 646 41 HOH HOH . S 7 HOH B 47 647 91 HOH HOH . S 7 HOH B 48 648 50 HOH HOH . S 7 HOH B 49 649 116 HOH HOH . S 7 HOH B 50 650 40 HOH HOH . S 7 HOH B 51 651 122 HOH HOH . T 7 HOH C 1 601 8 HOH HOH . T 7 HOH C 2 602 83 HOH HOH . T 7 HOH C 3 603 106 HOH HOH . T 7 HOH C 4 604 107 HOH HOH . T 7 HOH C 5 605 79 HOH HOH . T 7 HOH C 6 606 81 HOH HOH . T 7 HOH C 7 607 109 HOH HOH . T 7 HOH C 8 608 108 HOH HOH . T 7 HOH C 9 609 38 HOH HOH . T 7 HOH C 10 610 80 HOH HOH . T 7 HOH C 11 611 82 HOH HOH . U 7 HOH D 1 701 37 HOH HOH . U 7 HOH D 2 702 20 HOH HOH . U 7 HOH D 3 703 44 HOH HOH . U 7 HOH D 4 704 102 HOH HOH . U 7 HOH D 5 705 22 HOH HOH . U 7 HOH D 6 706 45 HOH HOH . U 7 HOH D 7 707 32 HOH HOH . U 7 HOH D 8 708 95 HOH HOH . U 7 HOH D 9 709 31 HOH HOH . U 7 HOH D 10 710 55 HOH HOH . U 7 HOH D 11 711 23 HOH HOH . U 7 HOH D 12 712 60 HOH HOH . U 7 HOH D 13 713 35 HOH HOH . U 7 HOH D 14 714 15 HOH HOH . U 7 HOH D 15 715 25 HOH HOH . U 7 HOH D 16 716 117 HOH HOH . U 7 HOH D 17 717 43 HOH HOH . U 7 HOH D 18 718 68 HOH HOH . U 7 HOH D 19 719 33 HOH HOH . U 7 HOH D 20 720 27 HOH HOH . U 7 HOH D 21 721 52 HOH HOH . U 7 HOH D 22 722 29 HOH HOH . U 7 HOH D 23 723 65 HOH HOH . U 7 HOH D 24 724 16 HOH HOH . U 7 HOH D 25 725 58 HOH HOH . U 7 HOH D 26 726 28 HOH HOH . U 7 HOH D 27 727 74 HOH HOH . U 7 HOH D 28 728 96 HOH HOH . U 7 HOH D 29 729 113 HOH HOH . U 7 HOH D 30 730 100 HOH HOH . U 7 HOH D 31 731 118 HOH HOH . U 7 HOH D 32 732 17 HOH HOH . U 7 HOH D 33 733 78 HOH HOH . U 7 HOH D 34 734 51 HOH HOH . U 7 HOH D 35 735 99 HOH HOH . U 7 HOH D 36 736 49 HOH HOH . U 7 HOH D 37 737 66 HOH HOH . U 7 HOH D 38 738 34 HOH HOH . U 7 HOH D 39 739 24 HOH HOH . U 7 HOH D 40 740 76 HOH HOH . U 7 HOH D 41 741 120 HOH HOH . U 7 HOH D 42 742 67 HOH HOH . U 7 HOH D 43 743 121 HOH HOH . U 7 HOH D 44 744 30 HOH HOH . U 7 HOH D 45 745 98 HOH HOH . U 7 HOH D 46 746 69 HOH HOH . U 7 HOH D 47 747 112 HOH HOH . U 7 HOH D 48 748 26 HOH HOH . U 7 HOH D 49 749 46 HOH HOH . U 7 HOH D 50 750 77 HOH HOH . U 7 HOH D 51 751 53 HOH HOH . U 7 HOH D 52 752 97 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 U60 . . . J 4 31.453 -17.713 24.562 1 46.41 ? C10 U60 505 B 1 HETATM 2 C C13 U60 . . . J 4 36.158 -22.403 22.048 1 48.22 ? C13 U60 505 B 1 HETATM 3 C C15 U60 . . . J 4 35.761 -21.023 20.092 1 44.4 ? C15 U60 505 B 1 HETATM 4 C C17 U60 . . . J 4 36.264 -20.557 18.703 1 35.58 ? C17 U60 505 B 1 HETATM 5 C C21 U60 . . . J 4 32.148 -20.929 18.753 1 44.23 ? C21 U60 505 B 1 HETATM 6 C C24 U60 . . . J 4 34.544 -22.481 24.037 1 53.02 ? C24 U60 505 B 1 HETATM 7 C C26 U60 . . . J 4 35.548 -23.445 24.677 1 44.5 ? C26 U60 505 B 1 HETATM 8 C C28 U60 . . . J 4 30.791 -20.325 19.128 1 44.81 ? C28 U60 505 B 1 HETATM 9 C C01 U60 . . . J 4 31.48 -18.9 23.839 1 43.6 ? C01 U60 505 B 1 HETATM 10 C C02 U60 . . . J 4 32.718 -19.319 23.301 1 46.63 ? C02 U60 505 B 1 HETATM 11 C C03 U60 . . . J 4 32.806 -20.516 22.562 1 50.43 ? C03 U60 505 B 1 HETATM 12 C C04 U60 . . . J 4 31.648 -21.289 22.369 1 41.98 ? C04 U60 505 B 1 HETATM 13 C C05 U60 . . . J 4 30.426 -20.87 22.907 1 41.05 ? C05 U60 505 B 1 HETATM 14 C C06 U60 . . . J 4 30.338 -19.672 23.643 1 42.98 ? C06 U60 505 B 1 HETATM 15 C C08 U60 . . . J 4 28.911 -17.943 24.436 1 38.92 ? C08 U60 505 B 1 HETATM 16 C C09 U60 . . . J 4 30.102 -17.275 25.102 1 48.39 ? C09 U60 505 B 1 HETATM 17 C C11 U60 . . . J 4 34.165 -21.023 21.931 1 45.51 ? C11 U60 505 B 1 HETATM 18 C C12 U60 . . . J 4 34.965 -21.952 22.616 1 49.97 ? C12 U60 505 B 1 HETATM 19 C C14 U60 . . . J 4 36.552 -21.941 20.792 1 47.13 ? C14 U60 505 B 1 HETATM 20 C C16 U60 . . . J 4 34.555 -20.562 20.664 1 42.16 ? C16 U60 505 B 1 HETATM 21 C C18 U60 . . . J 4 33.629 -19.543 19.952 1 48.03 ? C18 U60 505 B 1 HETATM 22 C C19 U60 . . . J 4 34.317 -18.181 19.847 1 48.69 ? C19 U60 505 B 1 HETATM 23 C C25 U60 . . . J 4 34.947 -22.309 25.504 1 48.49 ? C25 U60 505 B 1 HETATM 24 C C27 U60 . . . J 4 33.988 -18.455 23.521 1 41.15 ? C27 U60 505 B 1 HETATM 25 C C29 U60 . . . J 4 31.071 -20.741 17.68 1 51.23 ? C29 U60 505 B 1 HETATM 26 O O07 U60 . . . J 4 29.117 -19.33 24.137 1 45.67 ? O07 U60 505 B 1 HETATM 27 O O20 U60 . . . J 4 33.233 -20.013 18.693 1 43.24 ? O20 U60 505 B 1 HETATM 28 O O22 U60 . . . J 4 34 -17.374 18.93 1 45.58 ? O22 U60 505 B 1 HETATM 29 O O23 U60 . . . J 4 35.208 -17.864 20.68 1 50.23 -1 O23 U60 505 B 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 267 _model_server_stats.encode_time_ms 16 _model_server_stats.element_count 29 #