data_8CBV
#
_model_server_result.job_id            WlJ0CYy4BP5fGnGYj8El3g 
_model_server_result.datetime_utc      '2024-11-15 09:37:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cbv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":505}' 
#
_entry.id    8CBV 
#
_exptl.entry_id    8CBV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.068 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            1,2-ETHANEDIOL 
_entity.pdbx_number_of_molecules    10 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          101.641 
_cell.angle_gamma         90 
_cell.entry_id            8CBV 
_cell.length_a            53.275 
_cell.length_b            65.083 
_cell.length_c            70.588 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CBV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    tetrameric 
_pdbx_struct_assembly.oligomeric_count      4 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 E N N 
? 2 G N N 
? 2 H N N 
? 2 I N N 
? 2 L N N 
? 2 M N N 
? 2 P N N 
? 2 Q N N 
? 2 R N N 
? 2 S N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 B OD1 ASP 85 B ASP 64 1_555 K MG MG . B MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.188 ? 
metalc ? metalc2 B OD2 ASP 137 B ASP 116 1_555 K MG MG . B MG 507 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.169 ? 
metalc ? metalc3 K MG MG . B MG 507 1_555 V O HOH . B HOH 611 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.057 ? 
metalc ? metalc4 K MG MG . B MG 507 1_555 V O HOH . B HOH 616 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.016 ? 
metalc ? metalc5 K MG MG . B MG 507 1_555 V O HOH . B HOH 648 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
metalc ? metalc6 K MG MG . B MG 507 1_555 V O HOH . B HOH 663 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.09 ? 
metalc ? metalc7 D OD1 ASP 85 D ASP 64 1_555 T MG MG . D MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc8 D OD2 ASP 137 D ASP 116 1_555 T MG MG . D MG 506 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.096 ? 
metalc ? metalc9 T MG MG . D MG 506 1_555 X O HOH . D HOH 619 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.946 ? 
metalc ? metalc10 T MG MG . D MG 506 1_555 X O HOH . D HOH 623 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
metalc ? metalc11 T MG MG . D MG 506 1_555 X O HOH . D HOH 640 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.108 ? 
metalc ? metalc12 T MG MG . D MG 506 1_555 X O HOH . D HOH 664 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.176 ? 
#
_chem_comp.formula           'C2 H6 O2' 
_chem_comp.formula_weight    62.068 
_chem_comp.id                EDO 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              1,2-ETHANEDIOL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'ETHYLENE GLYCOL' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 EDO sing 83 n n 
C1 C2 EDO sing 84 n n 
C1 H11 EDO sing 85 n n 
C1 H12 EDO sing 86 n n 
O1 HO1 EDO sing 87 n n 
C2 O2 EDO sing 88 n n 
C2 H21 EDO sing 89 n n 
C2 H22 EDO sing 90 n n 
O2 HO2 EDO sing 91 n n 
#
_atom_sites.entry_id                     8CBV 
_atom_sites.fract_transf_matrix[1][1]    0.018771 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.003867 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.015365 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.014464 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
E 2 EDO B 1 501 301 EDO EDO . 
F 3 PEG B 1 502 302 PEG PEG . 
G 2 EDO B 1 503 901 EDO EDO . 
H 2 EDO B 1 504 902 EDO EDO . 
I 2 EDO B 1 505 903 EDO EDO . 
J 4 U5S B 1 506 303 U5S LIG . 
K 5 MG B 1 507 1 MG MG . 
L 2 EDO B 1 508 77 EDO EDO . 
M 2 EDO C 1 501 904 EDO EDO . 
N 6 CL C 1 502 1 CL CL . 
O 4 U5S D 1 501 303 U5S LIG . 
P 2 EDO D 1 502 301 EDO EDO . 
Q 2 EDO D 1 503 902 EDO EDO . 
R 2 EDO D 1 504 905 EDO EDO . 
S 2 EDO D 1 505 906 EDO EDO . 
T 5 MG D 1 506 2 MG MG . 
U 7 HOH A 1 501 12 HOH HOH . 
U 7 HOH A 2 502 197 HOH HOH . 
U 7 HOH A 3 503 84 HOH HOH . 
U 7 HOH A 4 504 13 HOH HOH . 
U 7 HOH A 5 505 243 HOH HOH . 
U 7 HOH A 6 506 148 HOH HOH . 
U 7 HOH A 7 507 198 HOH HOH . 
U 7 HOH A 8 508 201 HOH HOH . 
U 7 HOH A 9 509 14 HOH HOH . 
U 7 HOH A 10 510 200 HOH HOH . 
U 7 HOH A 11 511 1 HOH HOH . 
U 7 HOH A 12 512 242 HOH HOH . 
V 7 HOH B 1 601 212 HOH HOH . 
V 7 HOH B 2 602 114 HOH HOH . 
V 7 HOH B 3 603 164 HOH HOH . 
V 7 HOH B 4 604 99 HOH HOH . 
V 7 HOH B 5 605 76 HOH HOH . 
V 7 HOH B 6 606 204 HOH HOH . 
V 7 HOH B 7 607 37 HOH HOH . 
V 7 HOH B 8 608 110 HOH HOH . 
V 7 HOH B 9 609 117 HOH HOH . 
V 7 HOH B 10 610 53 HOH HOH . 
V 7 HOH B 11 611 51 HOH HOH . 
V 7 HOH B 12 612 24 HOH HOH . 
V 7 HOH B 13 613 58 HOH HOH . 
V 7 HOH B 14 614 4 HOH HOH . 
V 7 HOH B 15 615 43 HOH HOH . 
V 7 HOH B 16 616 50 HOH HOH . 
V 7 HOH B 17 617 54 HOH HOH . 
V 7 HOH B 18 618 122 HOH HOH . 
V 7 HOH B 19 619 61 HOH HOH . 
V 7 HOH B 20 620 92 HOH HOH . 
V 7 HOH B 21 621 66 HOH HOH . 
V 7 HOH B 22 622 44 HOH HOH . 
V 7 HOH B 23 623 217 HOH HOH . 
V 7 HOH B 24 624 29 HOH HOH . 
V 7 HOH B 25 625 222 HOH HOH . 
V 7 HOH B 26 626 49 HOH HOH . 
V 7 HOH B 27 627 93 HOH HOH . 
V 7 HOH B 28 628 67 HOH HOH . 
V 7 HOH B 29 629 203 HOH HOH . 
V 7 HOH B 30 630 174 HOH HOH . 
V 7 HOH B 31 631 79 HOH HOH . 
V 7 HOH B 32 632 30 HOH HOH . 
V 7 HOH B 33 633 170 HOH HOH . 
V 7 HOH B 34 634 87 HOH HOH . 
V 7 HOH B 35 635 21 HOH HOH . 
V 7 HOH B 36 636 55 HOH HOH . 
V 7 HOH B 37 637 59 HOH HOH . 
V 7 HOH B 38 638 145 HOH HOH . 
V 7 HOH B 39 639 123 HOH HOH . 
V 7 HOH B 40 640 23 HOH HOH . 
V 7 HOH B 41 641 72 HOH HOH . 
V 7 HOH B 42 642 154 HOH HOH . 
V 7 HOH B 43 643 81 HOH HOH . 
V 7 HOH B 44 644 168 HOH HOH . 
V 7 HOH B 45 645 156 HOH HOH . 
V 7 HOH B 46 646 91 HOH HOH . 
V 7 HOH B 47 647 90 HOH HOH . 
V 7 HOH B 48 648 52 HOH HOH . 
V 7 HOH B 49 649 115 HOH HOH . 
V 7 HOH B 50 650 62 HOH HOH . 
V 7 HOH B 51 651 176 HOH HOH . 
V 7 HOH B 52 652 173 HOH HOH . 
V 7 HOH B 53 653 88 HOH HOH . 
V 7 HOH B 54 654 7 HOH HOH . 
V 7 HOH B 55 655 111 HOH HOH . 
V 7 HOH B 56 656 113 HOH HOH . 
V 7 HOH B 57 657 56 HOH HOH . 
V 7 HOH B 58 658 83 HOH HOH . 
V 7 HOH B 59 659 73 HOH HOH . 
V 7 HOH B 60 660 112 HOH HOH . 
V 7 HOH B 61 661 166 HOH HOH . 
V 7 HOH B 62 662 5 HOH HOH . 
V 7 HOH B 63 663 45 HOH HOH . 
V 7 HOH B 64 664 155 HOH HOH . 
V 7 HOH B 65 665 16 HOH HOH . 
V 7 HOH B 66 666 63 HOH HOH . 
V 7 HOH B 67 667 3 HOH HOH . 
V 7 HOH B 68 668 167 HOH HOH . 
V 7 HOH B 69 669 205 HOH HOH . 
V 7 HOH B 70 670 60 HOH HOH . 
V 7 HOH B 71 671 159 HOH HOH . 
V 7 HOH B 72 672 161 HOH HOH . 
V 7 HOH B 73 673 241 HOH HOH . 
V 7 HOH B 74 674 38 HOH HOH . 
V 7 HOH B 75 675 17 HOH HOH . 
V 7 HOH B 76 676 178 HOH HOH . 
V 7 HOH B 77 677 158 HOH HOH . 
V 7 HOH B 78 678 31 HOH HOH . 
V 7 HOH B 79 679 162 HOH HOH . 
V 7 HOH B 80 680 9 HOH HOH . 
V 7 HOH B 81 681 18 HOH HOH . 
V 7 HOH B 82 682 22 HOH HOH . 
V 7 HOH B 83 683 219 HOH HOH . 
V 7 HOH B 84 684 1 HOH HOH . 
V 7 HOH B 85 685 57 HOH HOH . 
V 7 HOH B 86 686 213 HOH HOH . 
V 7 HOH B 87 687 8 HOH HOH . 
W 7 HOH C 1 601 207 HOH HOH . 
W 7 HOH C 2 602 36 HOH HOH . 
W 7 HOH C 3 603 152 HOH HOH . 
W 7 HOH C 4 604 151 HOH HOH . 
W 7 HOH C 5 605 237 HOH HOH . 
W 7 HOH C 6 606 153 HOH HOH . 
W 7 HOH C 7 607 104 HOH HOH . 
W 7 HOH C 8 608 209 HOH HOH . 
W 7 HOH C 9 609 236 HOH HOH . 
W 7 HOH C 10 610 210 HOH HOH . 
W 7 HOH C 11 611 238 HOH HOH . 
W 7 HOH C 12 612 96 HOH HOH . 
W 7 HOH C 13 613 103 HOH HOH . 
W 7 HOH C 14 614 106 HOH HOH . 
W 7 HOH C 15 615 208 HOH HOH . 
X 7 HOH D 1 601 228 HOH HOH . 
X 7 HOH D 2 602 27 HOH HOH . 
X 7 HOH D 3 603 185 HOH HOH . 
X 7 HOH D 4 604 125 HOH HOH . 
X 7 HOH D 5 605 64 HOH HOH . 
X 7 HOH D 6 606 191 HOH HOH . 
X 7 HOH D 7 607 11 HOH HOH . 
X 7 HOH D 8 608 128 HOH HOH . 
X 7 HOH D 9 609 108 HOH HOH . 
X 7 HOH D 10 610 86 HOH HOH . 
X 7 HOH D 11 611 140 HOH HOH . 
X 7 HOH D 12 612 229 HOH HOH . 
X 7 HOH D 13 613 68 HOH HOH . 
X 7 HOH D 14 614 226 HOH HOH . 
X 7 HOH D 15 615 134 HOH HOH . 
X 7 HOH D 16 616 184 HOH HOH . 
X 7 HOH D 17 617 120 HOH HOH . 
X 7 HOH D 18 618 138 HOH HOH . 
X 7 HOH D 19 619 130 HOH HOH . 
X 7 HOH D 20 620 190 HOH HOH . 
X 7 HOH D 21 621 132 HOH HOH . 
X 7 HOH D 22 622 142 HOH HOH . 
X 7 HOH D 23 623 131 HOH HOH . 
X 7 HOH D 24 624 160 HOH HOH . 
X 7 HOH D 25 625 89 HOH HOH . 
X 7 HOH D 26 626 230 HOH HOH . 
X 7 HOH D 27 627 126 HOH HOH . 
X 7 HOH D 28 628 80 HOH HOH . 
X 7 HOH D 29 629 192 HOH HOH . 
X 7 HOH D 30 630 107 HOH HOH . 
X 7 HOH D 31 631 119 HOH HOH . 
X 7 HOH D 32 632 32 HOH HOH . 
X 7 HOH D 33 633 141 HOH HOH . 
X 7 HOH D 34 634 78 HOH HOH . 
X 7 HOH D 35 635 188 HOH HOH . 
X 7 HOH D 36 636 40 HOH HOH . 
X 7 HOH D 37 637 116 HOH HOH . 
X 7 HOH D 38 638 28 HOH HOH . 
X 7 HOH D 39 639 74 HOH HOH . 
X 7 HOH D 40 640 129 HOH HOH . 
X 7 HOH D 41 641 46 HOH HOH . 
X 7 HOH D 42 642 25 HOH HOH . 
X 7 HOH D 43 643 82 HOH HOH . 
X 7 HOH D 44 644 101 HOH HOH . 
X 7 HOH D 45 645 20 HOH HOH . 
X 7 HOH D 46 646 146 HOH HOH . 
X 7 HOH D 47 647 75 HOH HOH . 
X 7 HOH D 48 648 102 HOH HOH . 
X 7 HOH D 49 649 26 HOH HOH . 
X 7 HOH D 50 650 172 HOH HOH . 
X 7 HOH D 51 651 10 HOH HOH . 
X 7 HOH D 52 652 186 HOH HOH . 
X 7 HOH D 53 653 239 HOH HOH . 
X 7 HOH D 54 654 33 HOH HOH . 
X 7 HOH D 55 655 195 HOH HOH . 
X 7 HOH D 56 656 65 HOH HOH . 
X 7 HOH D 57 657 171 HOH HOH . 
X 7 HOH D 58 658 124 HOH HOH . 
X 7 HOH D 59 659 163 HOH HOH . 
X 7 HOH D 60 660 157 HOH HOH . 
X 7 HOH D 61 661 225 HOH HOH . 
X 7 HOH D 62 662 15 HOH HOH . 
X 7 HOH D 63 663 6 HOH HOH . 
X 7 HOH D 64 664 127 HOH HOH . 
X 7 HOH D 65 665 165 HOH HOH . 
X 7 HOH D 66 666 35 HOH HOH . 
X 7 HOH D 67 667 34 HOH HOH . 
X 7 HOH D 68 668 71 HOH HOH . 
X 7 HOH D 69 669 39 HOH HOH . 
X 7 HOH D 70 670 189 HOH HOH . 
X 7 HOH D 71 671 70 HOH HOH . 
X 7 HOH D 72 672 69 HOH HOH . 
X 7 HOH D 73 673 41 HOH HOH . 
X 7 HOH D 74 674 133 HOH HOH . 
X 7 HOH D 75 675 193 HOH HOH . 
X 7 HOH D 76 676 187 HOH HOH . 
X 7 HOH D 77 677 2 HOH HOH . 
X 7 HOH D 78 678 19 HOH HOH . 
X 7 HOH D 79 679 196 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 EDO . . . S 2 7.791 -25.936 -3.23 1 38.17 ? C1 EDO 505 D 1 
HETATM 2 O O1 EDO . . . S 2 8.112 -24.98 -4.218 1 39.74 ? O1 EDO 505 D 1 
HETATM 3 C C2 EDO . . . S 2 6.751 -26.91 -3.731 1 44.99 ? C2 EDO 505 D 1 
HETATM 4 O O2 EDO . . . S 2 7.182 -27.504 -4.939 1 48.99 ? O2 EDO 505 D 1 
#
_model_server_stats.io_time_ms              18 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           253 
_model_server_stats.encode_time_ms          5 
_model_server_stats.element_count           4 
#