data_8CBY
#
_model_server_result.job_id            R99nW2M5JUtQ54yPVYQVZA 
_model_server_result.datetime_utc      '2024-10-14 00:27:30' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cby 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":301}' 
#
_entry.id    8CBY 
#
_exptl.entry_id    8CBY 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              362.46 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            (11alpha,14beta)-11,17,21-trihydroxypregn-4-ene-3,20-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8CBY 
_cell.length_a            79.937 
_cell.length_b            79.937 
_cell.length_c            253.453 
_cell.Z_PDB               12 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CBY 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        179 
_symmetry.space_group_name_Hall    'P 65 2 (x,y,z+1/12)' 
_symmetry.space_group_name_H-M     'P 65 2 2' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 23 L CYS 23 1_555 A SG CYS 87 L CYS 87 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? 
disulf ? disulf2 A SG CYS 131 L CYS 131 1_555 A SG CYS 191 L CYS 191 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.018 ? 
disulf ? disulf3 A SG CYS 211 L CYS 211 1_555 B SG CYS 221 H CYS 221 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.043 ? 
disulf ? disulf4 B SG CYS 22 H CYS 22 1_555 B SG CYS 96 H CYS 96 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.012 ? 
disulf ? disulf5 B SG CYS 146 H CYS 146 1_555 B SG CYS 201 H CYS 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? 
#
_chem_comp.formula           'C21 H30 O5' 
_chem_comp.formula_weight    362.46 
_chem_comp.id                HCY 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              (11alpha,14beta)-11,17,21-trihydroxypregn-4-ene-3,20-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     CORTISOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O1 C3 HCY doub 129 n n 
C3 C4 HCY sing 130 n n 
C3 C2 HCY sing 131 n n 
C4 C5 HCY doub 132 n n 
C5 C6 HCY sing 133 n n 
C5 C10 HCY sing 134 n n 
C6 C7 HCY sing 135 n n 
C7 C8 HCY sing 136 n n 
C2 C1 HCY sing 137 n n 
C1 C10 HCY sing 138 n n 
C10 C19 HCY sing 139 n n 
C10 C9 HCY sing 140 n n 
C9 C8 HCY sing 141 n n 
C9 C11 HCY sing 142 n n 
C8 C14 HCY sing 143 n n 
C11 O2 HCY sing 144 n n 
C11 C12 HCY sing 145 n n 
C12 C13 HCY sing 146 n n 
C13 C18 HCY sing 147 n n 
C13 C14 HCY sing 148 n n 
C13 C17 HCY sing 149 n n 
C14 C15 HCY sing 150 n n 
C15 C16 HCY sing 151 n n 
C16 C17 HCY sing 152 n n 
C17 O3 HCY sing 153 n n 
C17 C20 HCY sing 154 n n 
C20 O4 HCY doub 155 n n 
C20 C21 HCY sing 156 n n 
C21 O5 HCY sing 157 n n 
C4 H4 HCY sing 158 n n 
C2 H2C1 HCY sing 159 n n 
C2 H2C2 HCY sing 160 n n 
C6 H6C1 HCY sing 161 n n 
C6 H6C2 HCY sing 162 n n 
C7 H7C1 HCY sing 163 n n 
C7 H7C2 HCY sing 164 n n 
C8 H8 HCY sing 165 n n 
C1 H1C1 HCY sing 166 n n 
C1 H1C2 HCY sing 167 n n 
C19 H191 HCY sing 168 n n 
C19 H192 HCY sing 169 n n 
C19 H193 HCY sing 170 n n 
C9 H9 HCY sing 171 n n 
C11 H11 HCY sing 172 n n 
C14 H14 HCY sing 173 n n 
O2 H2 HCY sing 174 n n 
C12 H121 HCY sing 175 n n 
C12 H122 HCY sing 176 n n 
C18 H181 HCY sing 177 n n 
C18 H182 HCY sing 178 n n 
C18 H183 HCY sing 179 n n 
C15 H151 HCY sing 180 n n 
C15 H152 HCY sing 181 n n 
C16 H161 HCY sing 182 n n 
C16 H162 HCY sing 183 n n 
O3 H3 HCY sing 184 n n 
C21 H211 HCY sing 185 n n 
C21 H212 HCY sing 186 n n 
O5 H5 HCY sing 187 n n 
#
_atom_sites.entry_id                     8CBY 
_atom_sites.fract_transf_matrix[1][1]    0.01251 
_atom_sites.fract_transf_matrix[1][2]    0.007223 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014445 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.003946 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 3 HCY H 1 301 1 HCY HCY . 
D 4 HOH L 1 301 81 HOH HOH . 
D 4 HOH L 2 302 49 HOH HOH . 
D 4 HOH L 3 303 13 HOH HOH . 
D 4 HOH L 4 304 60 HOH HOH . 
D 4 HOH L 5 305 10 HOH HOH . 
D 4 HOH L 6 306 125 HOH HOH . 
D 4 HOH L 7 307 141 HOH HOH . 
D 4 HOH L 8 308 91 HOH HOH . 
D 4 HOH L 9 309 19 HOH HOH . 
D 4 HOH L 10 310 127 HOH HOH . 
D 4 HOH L 11 311 70 HOH HOH . 
D 4 HOH L 12 312 20 HOH HOH . 
D 4 HOH L 13 313 98 HOH HOH . 
D 4 HOH L 14 314 80 HOH HOH . 
D 4 HOH L 15 315 90 HOH HOH . 
D 4 HOH L 16 316 31 HOH HOH . 
D 4 HOH L 17 317 129 HOH HOH . 
D 4 HOH L 18 318 30 HOH HOH . 
D 4 HOH L 19 319 18 HOH HOH . 
D 4 HOH L 20 320 116 HOH HOH . 
D 4 HOH L 21 321 44 HOH HOH . 
D 4 HOH L 22 322 111 HOH HOH . 
D 4 HOH L 23 323 104 HOH HOH . 
D 4 HOH L 24 324 2 HOH HOH . 
D 4 HOH L 25 325 52 HOH HOH . 
D 4 HOH L 26 326 4 HOH HOH . 
D 4 HOH L 27 327 6 HOH HOH . 
D 4 HOH L 28 328 15 HOH HOH . 
D 4 HOH L 29 329 50 HOH HOH . 
D 4 HOH L 30 330 9 HOH HOH . 
D 4 HOH L 31 331 3 HOH HOH . 
D 4 HOH L 32 332 8 HOH HOH . 
D 4 HOH L 33 333 47 HOH HOH . 
D 4 HOH L 34 334 87 HOH HOH . 
D 4 HOH L 35 335 7 HOH HOH . 
D 4 HOH L 36 336 88 HOH HOH . 
D 4 HOH L 37 337 56 HOH HOH . 
D 4 HOH L 38 338 113 HOH HOH . 
D 4 HOH L 39 339 23 HOH HOH . 
D 4 HOH L 40 340 38 HOH HOH . 
D 4 HOH L 41 341 51 HOH HOH . 
D 4 HOH L 42 342 92 HOH HOH . 
D 4 HOH L 43 343 136 HOH HOH . 
D 4 HOH L 44 344 16 HOH HOH . 
D 4 HOH L 45 345 26 HOH HOH . 
D 4 HOH L 46 346 79 HOH HOH . 
D 4 HOH L 47 347 29 HOH HOH . 
D 4 HOH L 48 348 73 HOH HOH . 
D 4 HOH L 49 349 12 HOH HOH . 
D 4 HOH L 50 350 76 HOH HOH . 
D 4 HOH L 51 351 64 HOH HOH . 
D 4 HOH L 52 352 11 HOH HOH . 
D 4 HOH L 53 353 103 HOH HOH . 
D 4 HOH L 54 354 117 HOH HOH . 
D 4 HOH L 55 355 75 HOH HOH . 
D 4 HOH L 56 356 37 HOH HOH . 
D 4 HOH L 57 357 145 HOH HOH . 
D 4 HOH L 58 358 39 HOH HOH . 
D 4 HOH L 59 359 142 HOH HOH . 
D 4 HOH L 60 360 122 HOH HOH . 
D 4 HOH L 61 361 83 HOH HOH . 
D 4 HOH L 62 362 105 HOH HOH . 
D 4 HOH L 63 363 140 HOH HOH . 
D 4 HOH L 64 364 66 HOH HOH . 
D 4 HOH L 65 365 5 HOH HOH . 
D 4 HOH L 66 366 22 HOH HOH . 
D 4 HOH L 67 367 77 HOH HOH . 
D 4 HOH L 68 368 95 HOH HOH . 
D 4 HOH L 69 369 128 HOH HOH . 
D 4 HOH L 70 370 114 HOH HOH . 
D 4 HOH L 71 371 120 HOH HOH . 
D 4 HOH L 72 372 119 HOH HOH . 
D 4 HOH L 73 373 94 HOH HOH . 
D 4 HOH L 74 374 118 HOH HOH . 
D 4 HOH L 75 375 106 HOH HOH . 
D 4 HOH L 76 376 72 HOH HOH . 
D 4 HOH L 77 377 27 HOH HOH . 
D 4 HOH L 78 378 143 HOH HOH . 
D 4 HOH L 79 379 54 HOH HOH . 
D 4 HOH L 80 380 124 HOH HOH . 
D 4 HOH L 81 381 132 HOH HOH . 
D 4 HOH L 82 382 121 HOH HOH . 
D 4 HOH L 83 383 71 HOH HOH . 
D 4 HOH L 84 384 82 HOH HOH . 
E 4 HOH H 1 401 33 HOH HOH . 
E 4 HOH H 2 402 34 HOH HOH . 
E 4 HOH H 3 403 107 HOH HOH . 
E 4 HOH H 4 404 93 HOH HOH . 
E 4 HOH H 5 405 126 HOH HOH . 
E 4 HOH H 6 406 133 HOH HOH . 
E 4 HOH H 7 407 53 HOH HOH . 
E 4 HOH H 8 408 24 HOH HOH . 
E 4 HOH H 9 409 84 HOH HOH . 
E 4 HOH H 10 410 130 HOH HOH . 
E 4 HOH H 11 411 62 HOH HOH . 
E 4 HOH H 12 412 109 HOH HOH . 
E 4 HOH H 13 413 110 HOH HOH . 
E 4 HOH H 14 414 59 HOH HOH . 
E 4 HOH H 15 415 139 HOH HOH . 
E 4 HOH H 16 416 55 HOH HOH . 
E 4 HOH H 17 417 32 HOH HOH . 
E 4 HOH H 18 418 97 HOH HOH . 
E 4 HOH H 19 419 21 HOH HOH . 
E 4 HOH H 20 420 89 HOH HOH . 
E 4 HOH H 21 421 99 HOH HOH . 
E 4 HOH H 22 422 102 HOH HOH . 
E 4 HOH H 23 423 46 HOH HOH . 
E 4 HOH H 24 424 134 HOH HOH . 
E 4 HOH H 25 425 28 HOH HOH . 
E 4 HOH H 26 426 57 HOH HOH . 
E 4 HOH H 27 427 36 HOH HOH . 
E 4 HOH H 28 428 100 HOH HOH . 
E 4 HOH H 29 429 146 HOH HOH . 
E 4 HOH H 30 430 14 HOH HOH . 
E 4 HOH H 31 431 42 HOH HOH . 
E 4 HOH H 32 432 123 HOH HOH . 
E 4 HOH H 33 433 115 HOH HOH . 
E 4 HOH H 34 434 48 HOH HOH . 
E 4 HOH H 35 435 65 HOH HOH . 
E 4 HOH H 36 436 40 HOH HOH . 
E 4 HOH H 37 437 138 HOH HOH . 
E 4 HOH H 38 438 63 HOH HOH . 
E 4 HOH H 39 439 41 HOH HOH . 
E 4 HOH H 40 440 96 HOH HOH . 
E 4 HOH H 41 441 108 HOH HOH . 
E 4 HOH H 42 442 85 HOH HOH . 
E 4 HOH H 43 443 67 HOH HOH . 
E 4 HOH H 44 444 135 HOH HOH . 
E 4 HOH H 45 445 112 HOH HOH . 
E 4 HOH H 46 446 45 HOH HOH . 
E 4 HOH H 47 447 144 HOH HOH . 
E 4 HOH H 48 448 25 HOH HOH . 
E 4 HOH H 49 449 58 HOH HOH . 
E 4 HOH H 50 450 68 HOH HOH . 
E 4 HOH H 51 451 101 HOH HOH . 
E 4 HOH H 52 452 61 HOH HOH . 
E 4 HOH H 53 453 17 HOH HOH . 
E 4 HOH H 54 454 43 HOH HOH . 
E 4 HOH H 55 455 78 HOH HOH . 
E 4 HOH H 56 456 137 HOH HOH . 
E 4 HOH H 57 457 1 HOH HOH . 
E 4 HOH H 58 458 35 HOH HOH . 
E 4 HOH H 59 459 131 HOH HOH . 
E 4 HOH H 60 460 69 HOH HOH . 
E 4 HOH H 61 461 74 HOH HOH . 
E 4 HOH H 62 462 86 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 HCY . . . C 3 -8.544 -0.15 -19.02 1 41.15 ? C1 HCY 301 H 1 
HETATM 2 C C2 HCY . . . C 3 -7.774 -0.14 -20.334 1 39.39 ? C2 HCY 301 H 1 
HETATM 3 C C3 HCY . . . C 3 -8.669 -0.465 -21.477 1 41.64 ? C3 HCY 301 H 1 
HETATM 4 C C4 HCY . . . C 3 -10.002 0.1 -21.415 1 36.98 ? C4 HCY 301 H 1 
HETATM 5 C C5 HCY . . . C 3 -10.52 0.674 -20.322 1 36.42 ? C5 HCY 301 H 1 
HETATM 6 C C6 HCY . . . C 3 -11.889 1.274 -20.354 1 35.99 ? C6 HCY 301 H 1 
HETATM 7 C C7 HCY . . . C 3 -12.771 0.704 -19.254 1 32.01 ? C7 HCY 301 H 1 
HETATM 8 C C8 HCY . . . C 3 -12.143 0.883 -17.876 1 34.49 ? C8 HCY 301 H 1 
HETATM 9 C C9 HCY . . . C 3 -10.721 0.282 -17.855 1 36.04 ? C9 HCY 301 H 1 
HETATM 10 C C10 HCY . . . C 3 -9.775 0.77 -18.995 1 37 ? C10 HCY 301 H 1 
HETATM 11 C C12 HCY . . . C 3 -11.02 -0.358 -15.383 1 36.09 ? C12 HCY 301 H 1 
HETATM 12 C C11 HCY . . . C 3 -10.075 0.208 -16.455 1 37.24 ? C11 HCY 301 H 1 
HETATM 13 C C13 HCY . . . C 3 -12.417 0.255 -15.388 1 34.99 ? C13 HCY 301 H 1 
HETATM 14 C C14 HCY . . . C 3 -12.971 0.176 -16.817 1 33.96 ? C14 HCY 301 H 1 
HETATM 15 C C15 HCY . . . C 3 -14.443 0.537 -16.647 1 36.41 ? C15 HCY 301 H 1 
HETATM 16 C C16 HCY . . . C 3 -14.839 -0.164 -15.332 1 32.91 ? C16 HCY 301 H 1 
HETATM 17 C C17 HCY . . . C 3 -13.518 -0.572 -14.645 1 37.11 ? C17 HCY 301 H 1 
HETATM 18 C C18 HCY . . . C 3 -12.411 1.689 -14.84 1 32.52 ? C18 HCY 301 H 1 
HETATM 19 C C19 HCY . . . C 3 -9.32 2.234 -18.822 1 35.4 ? C19 HCY 301 H 1 
HETATM 20 C C20 HCY . . . C 3 -13.538 -0.356 -13.13 1 36.07 ? C20 HCY 301 H 1 
HETATM 21 C C21 HCY . . . C 3 -12.386 -0.923 -12.332 1 37.64 ? C21 HCY 301 H 1 
HETATM 22 O O1 HCY . . . C 3 -8.305 -1.173 -22.406 1 38.1 ? O1 HCY 301 H 1 
HETATM 23 O O2 HCY . . . C 3 -9.586 1.48 -16.02 1 37.63 ? O2 HCY 301 H 1 
HETATM 24 O O3 HCY . . . C 3 -13.221 -1.954 -14.86 1 34.13 ? O3 HCY 301 H 1 
HETATM 25 O O4 HCY . . . C 3 -14.433 0.226 -12.566 1 33.88 ? O4 HCY 301 H 1 
HETATM 26 O O5 HCY . . . C 3 -12.387 -0.422 -11.02 1 40.85 ? O5 HCY 301 H 1 
#
_model_server_stats.io_time_ms              23 
_model_server_stats.parse_time_ms           12 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           296 
_model_server_stats.encode_time_ms          8 
_model_server_stats.element_count           26 
#