data_8CC4 # _model_server_result.job_id AfUF_BRPvZIvRwzUTTNRXA _model_server_result.datetime_utc '2024-11-07 13:42:36' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cc4 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":402}' # _entry.id 8CC4 # _exptl.entry_id 8CC4 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 339.247 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '[(2~{R})-4-methyl-1-oxidanylidene-1-[[4-(trifluoromethyl)phenyl]amino]pentan-2-yl]phosphonic acid' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CC4 _cell.length_a 44.404 _cell.length_b 77.114 _cell.length_c 152.205 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CC4 _symmetry.cell_setting ? _symmetry.Int_Tables_number 18 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 2 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D,E,I 1 1 B,F,G,H,J 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 G N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 30 A CYS 30 1_555 A SG CYS 58 A CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.034 ? disulf ? disulf2 A SG CYS 270 A CYS 270 1_555 A SG CYS 297 A CYS 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf3 B SG CYS 30 B CYS 30 1_555 B SG CYS 58 B CYS 58 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? disulf ? disulf4 B SG CYS 270 B CYS 270 1_555 B SG CYS 297 B CYS 297 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? metalc ? metalc1 A OD1 ASP 136 A ASP 136 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.109 ? metalc ? metalc2 A NE2 HIS 140 A HIS 140 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.29 ? metalc ? metalc3 A NE2 HIS 144 A HIS 144 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.251 ? metalc ? metalc4 A OE1 GLU 164 A GLU 164 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.591 ? metalc ? metalc5 A OE2 GLU 164 A GLU 164 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.976 ? metalc ? metalc6 A OE2 GLU 172 A GLU 172 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.661 ? metalc ? metalc7 A OE1 GLU 175 A GLU 175 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.329 ? metalc ? metalc8 A OE2 GLU 175 A GLU 175 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.65 ? metalc ? metalc9 A O LEU 185 A LEU 185 1_555 C CA CA . A CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.764 ? metalc ? metalc10 D O22 U7F . A U7F 402 1_555 E ZN ZN . A ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.028 ? metalc ? metalc11 B NE2 HIS 140 B HIS 140 1_555 H ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.277 ? metalc ? metalc12 B NE2 HIS 144 B HIS 144 1_555 H ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.28 ? metalc ? metalc13 B OE2 GLU 164 B GLU 164 1_555 H ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.838 ? metalc ? metalc14 B OE2 GLU 172 B GLU 172 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.76 ? metalc ? metalc15 B OE2 GLU 175 B GLU 175 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.326 ? metalc ? metalc16 B OD1 ASP 183 B ASP 183 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.942 ? metalc ? metalc17 B O LEU 185 B LEU 185 1_555 F CA CA . B CA 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.291 ? metalc ? metalc18 G O20 U7F . B U7F 402 1_555 H ZN ZN . B ZN 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.914 ? # _chem_comp.formula 'C13 H17 F3 N O4 P' _chem_comp.formula_weight 339.247 _chem_comp.id U7F _chem_comp.mon_nstd_flag . _chem_comp.name '[(2~{R})-4-methyl-1-oxidanylidene-1-[[4-(trifluoromethyl)phenyl]amino]pentan-2-yl]phosphonic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F15 C13 U7F sing 358 n n F14 C13 U7F sing 359 n n C13 F16 U7F sing 360 n n C13 C12 U7F sing 361 n n C12 C17 U7F doub 362 n y C12 C11 U7F sing 363 n y C17 C18 U7F sing 364 n y C11 C10 U7F doub 365 n y C18 C09 U7F doub 366 n y C10 C09 U7F sing 367 n y C09 N08 U7F sing 368 n n O07 C06 U7F doub 369 n n N08 C06 U7F sing 370 n n C06 C05 U7F sing 371 n n O22 P19 U7F doub 372 n n C05 C04 U7F sing 373 n n C05 P19 U7F sing 374 n n C03 C02 U7F sing 375 n n O20 P19 U7F sing 376 n n C04 C02 U7F sing 377 n n P19 O21 U7F sing 378 n n C01 C02 U7F sing 379 n n C10 H1 U7F sing 380 n n C17 H2 U7F sing 381 n n C01 H3 U7F sing 382 n n C01 H4 U7F sing 383 n n C01 H5 U7F sing 384 n n C02 H6 U7F sing 385 n n C03 H7 U7F sing 386 n n C03 H8 U7F sing 387 n n C03 H9 U7F sing 388 n n C04 H10 U7F sing 389 n n C04 H11 U7F sing 390 n n C05 H12 U7F sing 391 n n C11 H13 U7F sing 392 n n C18 H14 U7F sing 393 n n N08 H15 U7F sing 394 n n O20 H16 U7F sing 395 n n O21 H17 U7F sing 396 n n # _atom_sites.entry_id 8CC4 _atom_sites.fract_transf_matrix[1][1] 0.02252 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012968 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.00657 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 CA A 1 401 301 CA CA . D 3 U7F A 1 402 4 U7F LIG . E 4 ZN A 1 403 1 ZN ZN . F 2 CA B 1 401 301 CA CA . G 3 U7F B 1 402 5 U7F LIG . H 4 ZN B 1 403 2 ZN ZN . I 5 HOH A 1 501 41 HOH HOH . I 5 HOH A 2 502 60 HOH HOH . I 5 HOH A 3 503 53 HOH HOH . I 5 HOH A 4 504 2 HOH HOH . I 5 HOH A 5 505 27 HOH HOH . I 5 HOH A 6 506 31 HOH HOH . I 5 HOH A 7 507 10 HOH HOH . I 5 HOH A 8 508 9 HOH HOH . I 5 HOH A 9 509 4 HOH HOH . I 5 HOH A 10 510 28 HOH HOH . I 5 HOH A 11 511 13 HOH HOH . I 5 HOH A 12 512 55 HOH HOH . I 5 HOH A 13 513 15 HOH HOH . I 5 HOH A 14 514 20 HOH HOH . I 5 HOH A 15 515 26 HOH HOH . I 5 HOH A 16 516 3 HOH HOH . I 5 HOH A 17 517 35 HOH HOH . I 5 HOH A 18 518 58 HOH HOH . I 5 HOH A 19 519 22 HOH HOH . I 5 HOH A 20 520 11 HOH HOH . I 5 HOH A 21 521 40 HOH HOH . I 5 HOH A 22 522 51 HOH HOH . I 5 HOH A 23 523 12 HOH HOH . I 5 HOH A 24 524 18 HOH HOH . I 5 HOH A 25 525 37 HOH HOH . I 5 HOH A 26 526 7 HOH HOH . I 5 HOH A 27 527 39 HOH HOH . I 5 HOH A 28 528 38 HOH HOH . J 5 HOH B 1 501 57 HOH HOH . J 5 HOH B 2 502 1 HOH HOH . J 5 HOH B 3 503 21 HOH HOH . J 5 HOH B 4 504 6 HOH HOH . J 5 HOH B 5 505 32 HOH HOH . J 5 HOH B 6 506 14 HOH HOH . J 5 HOH B 7 507 47 HOH HOH . J 5 HOH B 8 508 52 HOH HOH . J 5 HOH B 9 509 17 HOH HOH . J 5 HOH B 10 510 48 HOH HOH . J 5 HOH B 11 511 42 HOH HOH . J 5 HOH B 12 512 16 HOH HOH . J 5 HOH B 13 513 5 HOH HOH . J 5 HOH B 14 514 34 HOH HOH . J 5 HOH B 15 515 36 HOH HOH . J 5 HOH B 16 516 19 HOH HOH . J 5 HOH B 17 517 33 HOH HOH . J 5 HOH B 18 518 23 HOH HOH . J 5 HOH B 19 519 54 HOH HOH . J 5 HOH B 20 520 24 HOH HOH . J 5 HOH B 21 521 29 HOH HOH . J 5 HOH B 22 522 50 HOH HOH . J 5 HOH B 23 523 30 HOH HOH . J 5 HOH B 24 524 25 HOH HOH . J 5 HOH B 25 525 45 HOH HOH . J 5 HOH B 26 526 59 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C10 U7F . . . D 3 12.213 3.305 2.966 1 28.85 ? C10 U7F 402 A 1 HETATM 2 C C13 U7F . . . D 3 12.532 2.807 -0.764 1 29.33 ? C13 U7F 402 A 1 HETATM 3 C C17 U7F . . . D 3 10.811 3.971 0.68 1 28.14 ? C17 U7F 402 A 1 HETATM 4 C C01 U7F . . . D 3 11.116 9.169 6.482 1 28.36 ? C01 U7F 402 A 1 HETATM 5 C C02 U7F . . . D 3 10.853 7.698 6.797 1 29.8 ? C02 U7F 402 A 1 HETATM 6 C C03 U7F . . . D 3 11.987 6.864 6.202 1 27.21 ? C03 U7F 402 A 1 HETATM 7 C C04 U7F . . . D 3 9.476 7.351 6.23 1 30.46 ? C04 U7F 402 A 1 HETATM 8 C C05 U7F . . . D 3 9.353 5.843 6.074 1 29.09 ? C05 U7F 402 A 1 HETATM 9 C C06 U7F . . . D 3 9.751 5.542 4.639 1 26.22 ? C06 U7F 402 A 1 HETATM 10 C C09 U7F . . . D 3 11.039 4.027 3.066 1 25.55 ? C09 U7F 402 A 1 HETATM 11 C C11 U7F . . . D 3 12.692 2.918 1.733 1 29.15 ? C11 U7F 402 A 1 HETATM 12 C C12 U7F . . . D 3 11.992 3.251 0.591 1 31.91 ? C12 U7F 402 A 1 HETATM 13 C C18 U7F . . . D 3 10.326 4.359 1.922 1 25.48 ? C18 U7F 402 A 1 HETATM 14 F F14 U7F . . . D 3 13.161 3.855 -1.366 1 34.19 ? F14 U7F 402 A 1 HETATM 15 F F15 U7F . . . D 3 11.506 2.378 -1.551 1 33.71 ? F15 U7F 402 A 1 HETATM 16 F F16 U7F . . . D 3 13.397 1.767 -0.576 1 27.39 ? F16 U7F 402 A 1 HETATM 17 N N08 U7F . . . D 3 10.591 4.394 4.394 1 23.39 ? N08 U7F 402 A 1 HETATM 18 O O07 U7F . . . D 3 9.401 6.259 3.763 1 28.95 ? O07 U7F 402 A 1 HETATM 19 O O20 U7F . . . D 3 7.438 3.838 6.215 1 28.46 ? O20 U7F 402 A 1 HETATM 20 O O21 U7F . . . D 3 7.191 5.525 7.783 1 35.91 -1 O21 U7F 402 A 1 HETATM 21 O O22 U7F . . . D 3 6.642 5.896 5.552 1 29.96 -1 O22 U7F 402 A 1 HETATM 22 P P19 U7F . . . D 3 7.629 5.272 6.412 1 27.02 ? P19 U7F 402 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 225 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 22 #