data_8CC6 # _model_server_result.job_id 5RZNd4icFauvc8d64m63FQ _model_server_result.datetime_utc '2024-11-28 19:50:09' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cc6 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"X","auth_seq_id":1001}' # _entry.id 8CC6 # _exptl.entry_id 8CC6 _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 376.882 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1-[(3-chlorophenyl)methyl]-4-piperazin-1-yl-pyrrolo[3,2-c]quinoline _entity.pdbx_number_of_molecules 5 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CC6 _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CC6 _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details pentameric _pdbx_struct_assembly.oligomeric_count 5 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 Q N N ? 4 S N N ? 4 U N N ? 4 W N N ? 4 X N N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # _pdbx_entity_branch_link.link_id 1 _pdbx_entity_branch_link.details ? _pdbx_entity_branch_link.entity_id 2 _pdbx_entity_branch_link.entity_branch_list_num_1 2 _pdbx_entity_branch_link.entity_branch_list_num_2 1 _pdbx_entity_branch_link.comp_id_1 NAG _pdbx_entity_branch_link.comp_id_2 NAG _pdbx_entity_branch_link.atom_id_1 C1 _pdbx_entity_branch_link.leaving_atom_id_1 O1 _pdbx_entity_branch_link.atom_stereo_config_1 . _pdbx_entity_branch_link.atom_id_2 O4 _pdbx_entity_branch_link.leaving_atom_id_2 HO4 _pdbx_entity_branch_link.atom_stereo_config_2 . _pdbx_entity_branch_link.value_order sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n F NAG 1 F 1 NAG A 505 NAG 2 n F NAG 2 F 2 NAG A 504 NAG 2 n G NAG 1 G 1 NAG A 506 NAG 2 n G NAG 2 G 2 NAG A 507 NAG 2 n H NAG 1 H 1 NAG B 505 NAG 2 n H NAG 2 H 2 NAG B 504 NAG 2 n I NAG 1 I 1 NAG B 506 NAG 2 n I NAG 2 I 2 NAG B 507 NAG 2 n J NAG 1 J 1 NAG C 505 NAG 2 n J NAG 2 J 2 NAG C 504 NAG 2 n K NAG 1 K 1 NAG C 506 NAG 2 n K NAG 2 K 2 NAG C 507 NAG 2 n L NAG 1 L 1 NAG D 505 NAG 2 n L NAG 2 L 2 NAG D 504 NAG 2 n M NAG 1 M 1 NAG D 506 NAG 2 n M NAG 2 M 2 NAG D 507 NAG 2 n N NAG 1 N 1 NAG E 505 NAG 2 n N NAG 2 N 2 NAG E 504 NAG 2 n O NAG 1 O 1 NAG E 506 NAG 2 n O NAG 2 O 2 NAG E 507 NAG # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A ND2 ASN 186 A ASN 82 1_555 P C1 NAG . A NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale2 A ND2 ASN 252 A ASN 148 1_555 G C1 NAG . G NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale3 A ND2 ASN 268 A ASN 164 1_555 F C1 NAG . F NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale4 B ND2 ASN 186 B ASN 82 1_555 R C1 NAG . B NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale5 B ND2 ASN 252 B ASN 148 1_555 I C1 NAG . I NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale6 B ND2 ASN 268 B ASN 164 1_555 H C1 NAG . H NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale7 C ND2 ASN 186 C ASN 82 1_555 T C1 NAG . C NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale8 C ND2 ASN 252 C ASN 148 1_555 K C1 NAG . K NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale9 C ND2 ASN 268 C ASN 164 1_555 J C1 NAG . J NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.44 ? covale ? covale10 D ND2 ASN 186 D ASN 82 1_555 V C1 NAG . D NAG 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale11 D ND2 ASN 252 D ASN 148 1_555 M C1 NAG . M NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale12 D ND2 ASN 268 D ASN 164 1_555 L C1 NAG . L NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale13 E ND2 ASN 186 E ASN 82 1_555 Y C1 NAG . E NAG 1002 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale14 E ND2 ASN 252 E ASN 148 1_555 O C1 NAG . O NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale15 E ND2 ASN 268 E ASN 164 1_555 N C1 NAG . N NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.439 ? covale ? covale16 F O4 NAG . F NAG 1 1_555 F C1 NAG . F NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale17 G O4 NAG . G NAG 1 1_555 G C1 NAG . G NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale18 H O4 NAG . H NAG 1 1_555 H C1 NAG . H NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale19 I O4 NAG . I NAG 1 1_555 I C1 NAG . I NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale20 J O4 NAG . J NAG 1 1_555 J C1 NAG . J NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale21 K O4 NAG . K NAG 1 1_555 K C1 NAG . K NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.437 ? covale ? covale22 L O4 NAG . L NAG 1 1_555 L C1 NAG . L NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.444 ? covale ? covale23 M O4 NAG . M NAG 1 1_555 M C1 NAG . M NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? covale ? covale24 N O4 NAG . N NAG 1 1_555 N C1 NAG . N NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.443 ? covale ? covale25 O O4 NAG . O NAG 1 1_555 O C1 NAG . O NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.438 ? # _chem_comp.formula 'C22 H21 Cl N4' _chem_comp.formula_weight 376.882 _chem_comp.id U9L _chem_comp.mon_nstd_flag . _chem_comp.name 1-[(3-chlorophenyl)methyl]-4-piperazin-1-yl-pyrrolo[3,2-c]quinoline _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C26 C25 U9L sing 386 n n C26 N21 U9L sing 387 n n C25 N24 U9L sing 388 n n C10 C09 U9L doub 389 n y C10 C11 U9L sing 390 n y C09 N08 U9L sing 391 n y N24 C23 U9L sing 392 n n N21 C20 U9L sing 393 n n N21 C22 U9L sing 394 n n C11 C20 U9L doub 395 n y C11 C12 U9L sing 396 n y C20 N19 U9L sing 397 n y N08 C07 U9L sing 398 n n N08 C12 U9L sing 399 n y C07 C06 U9L sing 400 n n C12 C13 U9L doub 401 n y N19 C18 U9L doub 402 n y C22 C23 U9L sing 403 n n C13 C18 U9L sing 404 n y C13 C14 U9L sing 405 n y C18 C17 U9L sing 406 n y C14 C15 U9L doub 407 n y C17 C16 U9L doub 408 n y C15 C16 U9L sing 409 n y C06 C05 U9L doub 410 n y C06 C27 U9L sing 411 n y C05 C04 U9L sing 412 n y C27 C02 U9L doub 413 n y C04 C03 U9L doub 414 n y C02 C03 U9L sing 415 n y C02 CL01 U9L sing 416 n n C22 H1 U9L sing 417 n n C22 H2 U9L sing 418 n n C23 H3 U9L sing 419 n n C23 H4 U9L sing 420 n n C25 H5 U9L sing 421 n n C25 H6 U9L sing 422 n n C26 H7 U9L sing 423 n n C26 H8 U9L sing 424 n n C27 H9 U9L sing 425 n n C10 H10 U9L sing 426 n n C14 H11 U9L sing 427 n n C15 H12 U9L sing 428 n n C16 H13 U9L sing 429 n n C17 H14 U9L sing 430 n n C03 H15 U9L sing 431 n n C04 H16 U9L sing 432 n n C05 H17 U9L sing 433 n n C07 H18 U9L sing 434 n n C07 H19 U9L sing 435 n n C09 H20 U9L sing 436 n n N24 H21 U9L sing 437 n n # _atom_sites.entry_id 8CC6 _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code P 3 NAG A 1 501 501 NAG NAG . Q 4 U9L A 1 502 1001 U9L PZ1 . R 3 NAG B 1 501 501 NAG NAG . S 4 U9L B 1 502 1001 U9L PZ1 . T 3 NAG C 1 501 501 NAG NAG . U 4 U9L C 1 502 1001 U9L PZ1 . V 3 NAG D 1 501 501 NAG NAG . W 4 U9L D 1 502 1001 U9L PZ1 . X 4 U9L E 1 1001 1001 U9L PZ1 . Y 3 NAG E 1 1002 501 NAG NAG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C20 U9L . . . X 4 130.914 167.244 114.827 1 25.69 ? C20 U9L 1001 E 1 HETATM 2 C C22 U9L . . . X 4 130.523 164.751 115.358 1 30.31 ? C22 U9L 1001 E 1 HETATM 3 C C23 U9L . . . X 4 129.247 163.956 115.701 1 25.85 ? C23 U9L 1001 E 1 HETATM 4 C C25 U9L . . . X 4 128.178 164.853 113.692 1 29.68 ? C25 U9L 1001 E 1 HETATM 5 C C26 U9L . . . X 4 129.469 165.625 113.353 1 16.47 ? C26 U9L 1001 E 1 HETATM 6 C C27 U9L . . . X 4 129.468 171.81 117.527 1 31.45 ? C27 U9L 1001 E 1 HETATM 7 C C10 U9L . . . X 4 128.736 168.664 114.353 1 29.32 ? C10 U9L 1001 E 1 HETATM 8 C C11 U9L . . . X 4 130.094 168.439 114.728 1 26.28 ? C11 U9L 1001 E 1 HETATM 9 C C12 U9L . . . X 4 130.645 169.714 115.042 1 24.44 ? C12 U9L 1001 E 1 HETATM 10 C C13 U9L . . . X 4 132.009 169.801 115.457 1 28.09 ? C13 U9L 1001 E 1 HETATM 11 C C14 U9L . . . X 4 132.676 170.997 115.796 1 26.61 ? C14 U9L 1001 E 1 HETATM 12 C C15 U9L . . . X 4 133.984 170.99 116.183 1 18.88 ? C15 U9L 1001 E 1 HETATM 13 C C16 U9L . . . X 4 134.688 169.781 116.249 1 16.96 ? C16 U9L 1001 E 1 HETATM 14 C C17 U9L . . . X 4 134.072 168.602 115.926 1 23.71 ? C17 U9L 1001 E 1 HETATM 15 C C18 U9L . . . X 4 132.712 168.587 115.522 1 29.88 ? C18 U9L 1001 E 1 HETATM 16 C C02 U9L . . . X 4 129.591 172.312 118.813 1 31.34 ? C02 U9L 1001 E 1 HETATM 17 C C03 U9L . . . X 4 129.994 173.61 119.078 1 29.54 ? C03 U9L 1001 E 1 HETATM 18 C C04 U9L . . . X 4 130.284 174.429 117.997 1 29.96 ? C04 U9L 1001 E 1 HETATM 19 C C05 U9L . . . X 4 130.168 173.952 116.697 1 29.09 ? C05 U9L 1001 E 1 HETATM 20 C C06 U9L . . . X 4 129.762 172.648 116.45 1 32.77 ? C06 U9L 1001 E 1 HETATM 21 C C07 U9L . . . X 4 129.647 172.16 115.032 1 29.45 ? C07 U9L 1001 E 1 HETATM 22 C C09 U9L . . . X 4 128.487 170.02 114.439 1 28.78 ? C09 U9L 1001 E 1 HETATM 23 N N08 U9L . . . X 4 129.644 170.691 114.859 1 25.61 ? N08 U9L 1001 E 1 HETATM 24 N N19 U9L . . . X 4 132.175 167.328 115.214 1 29.5 ? N19 U9L 1001 E 1 HETATM 25 N N21 U9L . . . X 4 130.327 165.938 114.503 1 22.31 ? N21 U9L 1001 E 1 HETATM 26 N N24 U9L . . . X 4 128.509 163.641 114.464 1 30.34 ? N24 U9L 1001 E 1 HETATM 27 CL CL01 U9L . . . X 4 129.232 171.303 120.161 1 64.54 ? CL01 U9L 1001 E 1 # _model_server_stats.io_time_ms 14 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 19 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 27 #