data_8CCK
#
_model_server_result.job_id            w2euOSAAJ0qvQ0uTjBq25g 
_model_server_result.datetime_utc      '2025-06-24 08:23:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cck 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":402}' 
#
_entry.id    8CCK 
#
_exptl.entry_id    8CCK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              92.094 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            GLYCEROL 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         120 
_cell.entry_id            8CCK 
_cell.length_a            68.02 
_cell.length_b            68.02 
_cell.length_c            155.22 
_cell.Z_PDB               6 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CCK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        152 
_symmetry.space_group_name_Hall    'P 31 2"' 
_symmetry.space_group_name_H-M     'P 31 2 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1,2 
#
loop_
_pdbx_struct_oper_list.id
_pdbx_struct_oper_list.type
_pdbx_struct_oper_list.name
_pdbx_struct_oper_list.symmetry_operation
_pdbx_struct_oper_list.matrix[1][1]
_pdbx_struct_oper_list.matrix[1][2]
_pdbx_struct_oper_list.matrix[1][3]
_pdbx_struct_oper_list.matrix[2][1]
_pdbx_struct_oper_list.matrix[2][2]
_pdbx_struct_oper_list.matrix[2][3]
_pdbx_struct_oper_list.matrix[3][1]
_pdbx_struct_oper_list.matrix[3][2]
_pdbx_struct_oper_list.matrix[3][3]
_pdbx_struct_oper_list.vector[1]
_pdbx_struct_oper_list.vector[2]
_pdbx_struct_oper_list.vector[3]
1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 
2 'crystal symmetry operation' 5_554 x-y,-y,-z-1/3 1 0 0 0 -1 0 0 0 -1 0 0 -51.74 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 145 A CYS 137 1_555 A SG CYS 148 A CYS 140 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
metalc ? metalc1 E MG MG . A MG 404 1_555 F O HOH . A HOH 576 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.124 ? 
#
_chem_comp.formula           'C3 H8 O3' 
_chem_comp.formula_weight    92.094 
_chem_comp.id                GOL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              GLYCEROL 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     GLYCERIN;PROPANE-1,2,3-TRIOL 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
C1 O1 GOL sing 220 n n 
C1 C2 GOL sing 221 n n 
C1 H11 GOL sing 222 n n 
C1 H12 GOL sing 223 n n 
O1 HO1 GOL sing 224 n n 
C2 O2 GOL sing 225 n n 
C2 C3 GOL sing 226 n n 
C2 H2 GOL sing 227 n n 
O2 HO2 GOL sing 228 n n 
C3 O3 GOL sing 229 n n 
C3 H31 GOL sing 230 n n 
C3 H32 GOL sing 231 n n 
O3 HO3 GOL sing 232 n n 
#
_atom_sites.entry_id                     8CCK 
_atom_sites.fract_transf_matrix[1][1]    0.014702 
_atom_sites.fract_transf_matrix[1][2]    0.008488 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.016976 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006442 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FAD A 1 401 400 FAD FAD . 
C 3 GOL A 1 402 801 GOL GOL . 
D 4 U8X A 1 403 901 U8X LIG . 
E 5 MG A 1 404 1 MG MG . 
F 6 HOH A 1 501 147 HOH HOH . 
F 6 HOH A 2 502 67 HOH HOH . 
F 6 HOH A 3 503 111 HOH HOH . 
F 6 HOH A 4 504 6 HOH HOH . 
F 6 HOH A 5 505 12 HOH HOH . 
F 6 HOH A 6 506 105 HOH HOH . 
F 6 HOH A 7 507 36 HOH HOH . 
F 6 HOH A 8 508 5 HOH HOH . 
F 6 HOH A 9 509 110 HOH HOH . 
F 6 HOH A 10 510 115 HOH HOH . 
F 6 HOH A 11 511 8 HOH HOH . 
F 6 HOH A 12 512 23 HOH HOH . 
F 6 HOH A 13 513 146 HOH HOH . 
F 6 HOH A 14 514 195 HOH HOH . 
F 6 HOH A 15 515 3 HOH HOH . 
F 6 HOH A 16 516 169 HOH HOH . 
F 6 HOH A 17 517 92 HOH HOH . 
F 6 HOH A 18 518 22 HOH HOH . 
F 6 HOH A 19 519 158 HOH HOH . 
F 6 HOH A 20 520 66 HOH HOH . 
F 6 HOH A 21 521 21 HOH HOH . 
F 6 HOH A 22 522 11 HOH HOH . 
F 6 HOH A 23 523 1 HOH HOH . 
F 6 HOH A 24 524 28 HOH HOH . 
F 6 HOH A 25 525 44 HOH HOH . 
F 6 HOH A 26 526 14 HOH HOH . 
F 6 HOH A 27 527 142 HOH HOH . 
F 6 HOH A 28 528 62 HOH HOH . 
F 6 HOH A 29 529 152 HOH HOH . 
F 6 HOH A 30 530 31 HOH HOH . 
F 6 HOH A 31 531 114 HOH HOH . 
F 6 HOH A 32 532 64 HOH HOH . 
F 6 HOH A 33 533 128 HOH HOH . 
F 6 HOH A 34 534 76 HOH HOH . 
F 6 HOH A 35 535 26 HOH HOH . 
F 6 HOH A 36 536 104 HOH HOH . 
F 6 HOH A 37 537 34 HOH HOH . 
F 6 HOH A 38 538 9 HOH HOH . 
F 6 HOH A 39 539 100 HOH HOH . 
F 6 HOH A 40 540 172 HOH HOH . 
F 6 HOH A 41 541 150 HOH HOH . 
F 6 HOH A 42 542 32 HOH HOH . 
F 6 HOH A 43 543 33 HOH HOH . 
F 6 HOH A 44 544 19 HOH HOH . 
F 6 HOH A 45 545 38 HOH HOH . 
F 6 HOH A 46 546 30 HOH HOH . 
F 6 HOH A 47 547 109 HOH HOH . 
F 6 HOH A 48 548 125 HOH HOH . 
F 6 HOH A 49 549 15 HOH HOH . 
F 6 HOH A 50 550 41 HOH HOH . 
F 6 HOH A 51 551 43 HOH HOH . 
F 6 HOH A 52 552 45 HOH HOH . 
F 6 HOH A 53 553 52 HOH HOH . 
F 6 HOH A 54 554 13 HOH HOH . 
F 6 HOH A 55 555 20 HOH HOH . 
F 6 HOH A 56 556 56 HOH HOH . 
F 6 HOH A 57 557 27 HOH HOH . 
F 6 HOH A 58 558 37 HOH HOH . 
F 6 HOH A 59 559 59 HOH HOH . 
F 6 HOH A 60 560 25 HOH HOH . 
F 6 HOH A 61 561 88 HOH HOH . 
F 6 HOH A 62 562 17 HOH HOH . 
F 6 HOH A 63 563 4 HOH HOH . 
F 6 HOH A 64 564 55 HOH HOH . 
F 6 HOH A 65 565 42 HOH HOH . 
F 6 HOH A 66 566 163 HOH HOH . 
F 6 HOH A 67 567 16 HOH HOH . 
F 6 HOH A 68 568 46 HOH HOH . 
F 6 HOH A 69 569 60 HOH HOH . 
F 6 HOH A 70 570 53 HOH HOH . 
F 6 HOH A 71 571 117 HOH HOH . 
F 6 HOH A 72 572 50 HOH HOH . 
F 6 HOH A 73 573 7 HOH HOH . 
F 6 HOH A 74 574 49 HOH HOH . 
F 6 HOH A 75 575 18 HOH HOH . 
F 6 HOH A 76 576 95 HOH HOH . 
F 6 HOH A 77 577 69 HOH HOH . 
F 6 HOH A 78 578 39 HOH HOH . 
F 6 HOH A 79 579 58 HOH HOH . 
F 6 HOH A 80 580 2 HOH HOH . 
F 6 HOH A 81 581 29 HOH HOH . 
F 6 HOH A 82 582 112 HOH HOH . 
F 6 HOH A 83 583 74 HOH HOH . 
F 6 HOH A 84 584 68 HOH HOH . 
F 6 HOH A 85 585 70 HOH HOH . 
F 6 HOH A 86 586 35 HOH HOH . 
F 6 HOH A 87 587 102 HOH HOH . 
F 6 HOH A 88 588 51 HOH HOH . 
F 6 HOH A 89 589 87 HOH HOH . 
F 6 HOH A 90 590 48 HOH HOH . 
F 6 HOH A 91 591 86 HOH HOH . 
F 6 HOH A 92 592 57 HOH HOH . 
F 6 HOH A 93 593 75 HOH HOH . 
F 6 HOH A 94 594 10 HOH HOH . 
F 6 HOH A 95 595 54 HOH HOH . 
F 6 HOH A 96 596 155 HOH HOH . 
F 6 HOH A 97 597 139 HOH HOH . 
F 6 HOH A 98 598 65 HOH HOH . 
F 6 HOH A 99 599 116 HOH HOH . 
F 6 HOH A 100 600 61 HOH HOH . 
F 6 HOH A 101 601 141 HOH HOH . 
F 6 HOH A 102 602 94 HOH HOH . 
F 6 HOH A 103 603 126 HOH HOH . 
F 6 HOH A 104 604 159 HOH HOH . 
F 6 HOH A 105 605 73 HOH HOH . 
F 6 HOH A 106 606 24 HOH HOH . 
F 6 HOH A 107 607 78 HOH HOH . 
F 6 HOH A 108 608 138 HOH HOH . 
F 6 HOH A 109 609 97 HOH HOH . 
F 6 HOH A 110 610 81 HOH HOH . 
F 6 HOH A 111 611 79 HOH HOH . 
F 6 HOH A 112 612 80 HOH HOH . 
F 6 HOH A 113 613 122 HOH HOH . 
F 6 HOH A 114 614 47 HOH HOH . 
F 6 HOH A 115 615 121 HOH HOH . 
F 6 HOH A 116 616 63 HOH HOH . 
F 6 HOH A 117 617 136 HOH HOH . 
F 6 HOH A 118 618 135 HOH HOH . 
F 6 HOH A 119 619 89 HOH HOH . 
F 6 HOH A 120 620 134 HOH HOH . 
F 6 HOH A 121 621 113 HOH HOH . 
F 6 HOH A 122 622 40 HOH HOH . 
F 6 HOH A 123 623 72 HOH HOH . 
F 6 HOH A 124 624 96 HOH HOH . 
F 6 HOH A 125 625 123 HOH HOH . 
F 6 HOH A 126 626 177 HOH HOH . 
F 6 HOH A 127 627 77 HOH HOH . 
F 6 HOH A 128 628 175 HOH HOH . 
F 6 HOH A 129 629 162 HOH HOH . 
F 6 HOH A 130 630 71 HOH HOH . 
F 6 HOH A 131 631 188 HOH HOH . 
F 6 HOH A 132 632 91 HOH HOH . 
F 6 HOH A 133 633 165 HOH HOH . 
F 6 HOH A 134 634 129 HOH HOH . 
F 6 HOH A 135 635 184 HOH HOH . 
F 6 HOH A 136 636 156 HOH HOH . 
F 6 HOH A 137 637 193 HOH HOH . 
F 6 HOH A 138 638 127 HOH HOH . 
F 6 HOH A 139 639 120 HOH HOH . 
F 6 HOH A 140 640 192 HOH HOH . 
F 6 HOH A 141 641 145 HOH HOH . 
F 6 HOH A 142 642 186 HOH HOH . 
F 6 HOH A 143 643 99 HOH HOH . 
F 6 HOH A 144 644 101 HOH HOH . 
F 6 HOH A 145 645 132 HOH HOH . 
F 6 HOH A 146 646 164 HOH HOH . 
F 6 HOH A 147 647 171 HOH HOH . 
F 6 HOH A 148 648 194 HOH HOH . 
F 6 HOH A 149 649 148 HOH HOH . 
F 6 HOH A 150 650 118 HOH HOH . 
F 6 HOH A 151 651 185 HOH HOH . 
F 6 HOH A 152 652 149 HOH HOH . 
F 6 HOH A 153 653 180 HOH HOH . 
F 6 HOH A 154 654 83 HOH HOH . 
F 6 HOH A 155 655 119 HOH HOH . 
F 6 HOH A 156 656 84 HOH HOH . 
F 6 HOH A 157 657 154 HOH HOH . 
F 6 HOH A 158 658 93 HOH HOH . 
F 6 HOH A 159 659 181 HOH HOH . 
F 6 HOH A 160 660 130 HOH HOH . 
F 6 HOH A 161 661 106 HOH HOH . 
F 6 HOH A 162 662 161 HOH HOH . 
F 6 HOH A 163 663 176 HOH HOH . 
F 6 HOH A 164 664 144 HOH HOH . 
F 6 HOH A 165 665 170 HOH HOH . 
F 6 HOH A 166 666 183 HOH HOH . 
F 6 HOH A 167 667 190 HOH HOH . 
F 6 HOH A 168 668 187 HOH HOH . 
F 6 HOH A 169 669 137 HOH HOH . 
F 6 HOH A 170 670 140 HOH HOH . 
F 6 HOH A 171 671 189 HOH HOH . 
F 6 HOH A 172 672 85 HOH HOH . 
F 6 HOH A 173 673 82 HOH HOH . 
F 6 HOH A 174 674 157 HOH HOH . 
F 6 HOH A 175 675 151 HOH HOH . 
F 6 HOH A 176 676 160 HOH HOH . 
F 6 HOH A 177 677 124 HOH HOH . 
F 6 HOH A 178 678 179 HOH HOH . 
F 6 HOH A 179 679 191 HOH HOH . 
F 6 HOH A 180 680 133 HOH HOH . 
F 6 HOH A 181 681 174 HOH HOH . 
F 6 HOH A 182 682 182 HOH HOH . 
F 6 HOH A 183 683 166 HOH HOH . 
F 6 HOH A 184 684 108 HOH HOH . 
F 6 HOH A 185 685 168 HOH HOH . 
F 6 HOH A 186 686 178 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C1 GOL . . . C 3 30.788 -9.383 -9.457 1 56.06 ? C1 GOL 402 A 1 
HETATM 2 O O1 GOL . . . C 3 29.844 -10.292 -9.997 1 60.7 ? O1 GOL 402 A 1 
HETATM 3 C C2 GOL . . . C 3 30.277 -8.927 -8.121 1 56.63 ? C2 GOL 402 A 1 
HETATM 4 O O2 GOL . . . C 3 31.147 -9.359 -7.119 1 58.2 ? O2 GOL 402 A 1 
HETATM 5 C C3 GOL . . . C 3 30.205 -7.345 -8.205 1 56.17 ? C3 GOL 402 A 1 
HETATM 6 O O3 GOL . . . C 3 30.052 -6.915 -9.53 1 48.49 ? O3 GOL 402 A 1 
#
_model_server_stats.io_time_ms              119 
_model_server_stats.parse_time_ms           9 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           230 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           6 
#