data_8CCO # _model_server_result.job_id e_Ny97G2I0S5obvYnDQf7Q _model_server_result.datetime_utc '2024-10-10 02:25:24' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cco # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"M","auth_seq_id":401}' # _entry.id 8CCO # _exptl.entry_id 8CCO _exptl.method 'ELECTRON MICROSCOPY' # _entity.details ? _entity.formula_weight 709.67 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description Jasplakinolide _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CCO _cell.length_a 1 _cell.length_b 1 _cell.length_c 1 _cell.Z_PDB ? _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CCO _symmetry.cell_setting ? _symmetry.Int_Tables_number 1 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation ? _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 G N N ? 2 J N N ? 2 M N N ? 2 P N N ? 2 S N N ? 2 V N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale ? covale1 A C GLU 74 A GLU 72 1_555 A N HIC 75 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale2 A C HIC 75 A HIC 73 1_555 A N GLY 76 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale3 B C GLU 74 B GLU 72 1_555 B N HIC 75 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale4 B C HIC 75 B HIC 73 1_555 B N GLY 76 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale5 C C GLU 74 C GLU 72 1_555 C N HIC 75 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale6 C C HIC 75 C HIC 73 1_555 C N GLY 76 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale7 D C GLU 74 D GLU 72 1_555 D N HIC 75 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale8 D C HIC 75 D HIC 73 1_555 D N GLY 76 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale9 E C GLU 74 E GLU 72 1_555 E N HIC 75 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? covale ? covale10 E C HIC 75 E HIC 73 1_555 E N GLY 76 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? covale ? covale11 F C GLU 74 F GLU 72 1_555 F N HIC 75 F HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? covale ? covale12 F C HIC 75 F HIC 73 1_555 F N GLY 76 F GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? metalc ? metalc1 H O2B ADP . A ADP 402 1_555 I MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc2 K O2B ADP . B ADP 402 1_555 L MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc3 N O2B ADP . C ADP 402 1_555 O MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc4 Q O2B ADP . D ADP 402 1_555 R MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? metalc ? metalc5 T O2B ADP . E ADP 402 1_555 U MG MG . E MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? metalc ? metalc6 W O2B ADP . F ADP 402 1_555 X MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? # _chem_comp.formula 'C36 H45 Br N4 O6' _chem_comp.formula_weight 709.67 _chem_comp.id 9UE _chem_comp.mon_nstd_flag . _chem_comp.name Jasplakinolide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag O2 C7 9UE doub 1 n n C5 C6 9UE sing 2 n n C5 C4 9UE sing 3 n n C C1 9UE sing 4 n n C19 N1 9UE sing 5 n n C6 C29 9UE sing 6 n n C6 N 9UE sing 7 n n O1 C4 9UE doub 8 n n C4 O 9UE sing 9 n n C34 C29 9UE doub 10 n y C34 C33 9UE sing 11 n y C7 N 9UE sing 12 n n C7 C8 9UE sing 13 n n BR C28 9UE sing 14 n n C1 C2 9UE sing 15 n n C1 C15 9UE sing 16 n n C29 C30 9UE sing 17 n y C20 C8 9UE sing 18 n n C20 C21 9UE sing 19 n n O C3 9UE sing 20 n n C33 C32 9UE doub 21 n y C3 C2 9UE sing 22 n n C3 C35 9UE sing 23 n n N1 C8 9UE sing 24 n n N1 C9 9UE sing 25 n n C10 C18 9UE sing 26 n n C10 C9 9UE sing 27 n n C10 N2 9UE sing 28 n n C17 C12 9UE sing 29 n n C15 C14 9UE doub 30 e n C9 O3 9UE doub 31 n n C30 C31 9UE doub 32 n y C32 C31 9UE sing 33 n y C32 O5 9UE sing 34 n n C28 C21 9UE doub 35 n y C28 N3 9UE sing 36 n y C21 C22 9UE sing 37 n y N2 C11 9UE sing 38 n n C11 O4 9UE doub 39 n n C11 C12 9UE sing 40 n n C14 C16 9UE sing 41 n n C14 C13 9UE sing 42 n n C12 C13 9UE sing 43 n n N3 C27 9UE sing 44 n y C22 C23 9UE doub 45 n y C22 C27 9UE sing 46 n y C23 C24 9UE sing 47 n y C27 C26 9UE doub 48 n y C24 C25 9UE doub 49 n y C26 C25 9UE sing 50 n y C35 H1 9UE sing 51 n n C35 H2 9UE sing 52 n n C35 H3 9UE sing 53 n n C34 H4 9UE sing 54 n n C33 H5 9UE sing 55 n n C31 H6 9UE sing 56 n n C30 H7 9UE sing 57 n n C26 H8 9UE sing 58 n n C25 H9 9UE sing 59 n n C24 H10 9UE sing 60 n n C1 H11 9UE sing 61 n n C2 H12 9UE sing 62 n n C2 H13 9UE sing 63 n n C3 H14 9UE sing 64 n n C5 H15 9UE sing 65 n n C5 H16 9UE sing 66 n n C6 H17 9UE sing 67 n n C23 H18 9UE sing 68 n n C20 H19 9UE sing 69 n n C20 H20 9UE sing 70 n n C19 H21 9UE sing 71 n n C19 H22 9UE sing 72 n n C19 H23 9UE sing 73 n n C18 H24 9UE sing 74 n n C18 H25 9UE sing 75 n n C18 H26 9UE sing 76 n n C17 H27 9UE sing 77 n n C17 H28 9UE sing 78 n n C17 H29 9UE sing 79 n n N3 H30 9UE sing 80 n n C16 H31 9UE sing 81 n n C16 H32 9UE sing 82 n n C16 H33 9UE sing 83 n n C15 H34 9UE sing 84 n n N2 H35 9UE sing 85 n n C13 H36 9UE sing 86 n n C13 H37 9UE sing 87 n n C12 H38 9UE sing 88 n n C10 H39 9UE sing 89 n n C8 H40 9UE sing 90 n n O5 H41 9UE sing 91 n n N H42 9UE sing 92 n n C H43 9UE sing 93 n n C H44 9UE sing 94 n n C H45 9UE sing 95 n n # _atom_sites.entry_id 8CCO _atom_sites.fract_transf_matrix[1][1] 1 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 1 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 1 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code G 2 9UE A 1 401 380 9UE 9UE . H 3 ADP A 1 402 401 ADP ADP . I 4 MG A 1 403 402 MG MG . J 2 9UE B 1 401 380 9UE 9UE . K 3 ADP B 1 402 401 ADP ADP . L 4 MG B 1 403 402 MG MG . M 2 9UE C 1 401 380 9UE 9UE . N 3 ADP C 1 402 401 ADP ADP . O 4 MG C 1 403 402 MG MG . P 2 9UE D 1 401 380 9UE 9UE . Q 3 ADP D 1 402 401 ADP ADP . R 4 MG D 1 403 402 MG MG . S 2 9UE E 1 401 380 9UE 9UE . T 3 ADP E 1 402 401 ADP ADP . U 4 MG E 1 403 402 MG MG . V 2 9UE F 1 401 380 9UE 9UE . W 3 ADP F 1 402 401 ADP ADP . X 4 MG F 1 403 402 MG MG . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C35 9UE . . . M 2 190.056 192.045 177.984 1 56.37 ? C35 9UE 401 C 1 HETATM 2 C C34 9UE . . . M 2 183.689 194.522 178.989 1 56.37 ? C34 9UE 401 C 1 HETATM 3 C C33 9UE . . . M 2 182.82 195.588 179.176 1 56.37 ? C33 9UE 401 C 1 HETATM 4 C C32 9UE . . . M 2 181.497 195.463 178.757 1 56.37 ? C32 9UE 401 C 1 HETATM 5 C C31 9UE . . . M 2 181.028 194.298 178.156 1 56.37 ? C31 9UE 401 C 1 HETATM 6 C C30 9UE . . . M 2 181.913 193.247 177.979 1 56.37 ? C30 9UE 401 C 1 HETATM 7 C C29 9UE . . . M 2 183.24 193.35 178.391 1 56.37 ? C29 9UE 401 C 1 HETATM 8 C C28 9UE . . . M 2 179.265 187.056 178.902 1 56.37 ? C28 9UE 401 C 1 HETATM 9 C C27 9UE . . . M 2 178.843 187.956 180.909 1 56.37 ? C27 9UE 401 C 1 HETATM 10 C C26 9UE . . . M 2 178.376 188.248 182.199 1 56.37 ? C26 9UE 401 C 1 HETATM 11 C C25 9UE . . . M 2 178.852 189.395 182.792 1 56.37 ? C25 9UE 401 C 1 HETATM 12 C C24 9UE . . . M 2 179.766 190.242 182.134 1 56.37 ? C24 9UE 401 C 1 HETATM 13 O O2 9UE . . . M 2 182.792 190.411 176.617 1 56.37 ? O2 9UE 401 C 1 HETATM 14 C C1 9UE . . . M 2 188.064 188.731 178.222 1 56.37 ? C1 9UE 401 C 1 HETATM 15 O O1 9UE . . . M 2 186.731 192.146 176.747 1 56.37 ? O1 9UE 401 C 1 HETATM 16 C C2 9UE . . . M 2 189.285 189.63 178.095 1 56.37 ? C2 9UE 401 C 1 HETATM 17 C C3 9UE . . . M 2 188.875 191.087 177.804 1 56.37 ? C3 9UE 401 C 1 HETATM 18 O O3 9UE . . . M 2 183.262 187.102 180.214 1 56.37 ? O3 9UE 401 C 1 HETATM 19 C C4 9UE . . . M 2 186.703 192.036 177.958 1 56.37 ? C4 9UE 401 C 1 HETATM 20 C C5 9UE . . . M 2 185.582 192.454 178.859 1 56.37 ? C5 9UE 401 C 1 HETATM 21 O O4 9UE . . . M 2 186.667 183.985 178.38 1 56.37 ? O4 9UE 401 C 1 HETATM 22 C C6 9UE . . . M 2 184.201 192.206 178.199 1 56.37 ? C6 9UE 401 C 1 HETATM 23 C C23 9UE . . . M 2 180.225 189.957 180.867 1 56.37 ? C23 9UE 401 C 1 HETATM 24 C C22 9UE . . . M 2 179.766 188.8 180.232 1 56.37 ? C22 9UE 401 C 1 HETATM 25 C C21 9UE . . . M 2 180.023 188.202 178.953 1 56.37 ? C21 9UE 401 C 1 HETATM 26 C C20 9UE . . . M 2 180.89 188.666 177.861 1 56.37 ? C20 9UE 401 C 1 HETATM 27 C C19 9UE . . . M 2 183.465 187.418 176.624 1 56.37 ? C19 9UE 401 C 1 HETATM 28 C C18 9UE . . . M 2 183.524 184.355 178.692 1 56.37 ? C18 9UE 401 C 1 HETATM 29 C C17 9UE . . . M 2 188.067 183.107 180.634 1 56.37 ? C17 9UE 401 C 1 HETATM 30 N N3 9UE . . . M 2 178.541 186.876 180.075 1 56.37 ? N3 9UE 401 C 1 HETATM 31 C C16 9UE . . . M 2 187.737 187.673 180.94 1 56.37 ? C16 9UE 401 C 1 HETATM 32 C C15 9UE . . . M 2 188.49 187.356 178.613 1 56.37 ? C15 9UE 401 C 1 HETATM 33 N N2 9UE . . . M 2 185.488 185.453 179.672 1 56.37 ? N2 9UE 401 C 1 HETATM 34 C C14 9UE . . . M 2 188.342 186.871 179.846 1 56.37 ? C14 9UE 401 C 1 HETATM 35 C C13 9UE . . . M 2 188.791 185.48 180.152 1 56.37 ? C13 9UE 401 C 1 HETATM 36 C C12 9UE . . . M 2 187.625 184.554 180.513 1 56.37 ? C12 9UE 401 C 1 HETATM 37 N N1 9UE . . . M 2 183.151 187.667 178.024 1 56.37 ? N1 9UE 401 C 1 HETATM 38 C C11 9UE . . . M 2 186.578 184.616 179.42 1 56.37 ? C11 9UE 401 C 1 HETATM 39 C C10 9UE . . . M 2 184.413 185.601 178.7 1 56.37 ? C10 9UE 401 C 1 HETATM 40 C C9 9UE . . . M 2 183.573 186.828 179.064 1 56.37 ? C9 9UE 401 C 1 HETATM 41 C C8 9UE . . . M 2 182.335 188.833 178.385 1 56.37 ? C8 9UE 401 C 1 HETATM 42 C C7 9UE . . . M 2 182.933 190.115 177.795 1 56.37 ? C7 9UE 401 C 1 HETATM 43 O O5 9UE . . . M 2 180.635 196.507 178.937 1 56.37 ? O5 9UE 401 C 1 HETATM 44 BR BR 9UE . . . M 2 179.178 185.829 177.456 1 56.37 ? BR 9UE 401 C 1 HETATM 45 N N 9UE . . . M 2 183.612 190.949 178.677 1 56.37 ? N 9UE 401 C 1 HETATM 46 O O 9UE . . . M 2 187.772 191.485 178.6 1 56.37 ? O 9UE 401 C 1 HETATM 47 C C 9UE . . . M 2 187.351 188.65 176.882 1 56.37 ? C 9UE 401 C 1 # _model_server_stats.io_time_ms 20 _model_server_stats.parse_time_ms 24 _model_server_stats.create_model_time_ms 21 _model_server_stats.query_time_ms 272 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 47 #