data_8CCO
#
_model_server_result.job_id            ZYCCklzA5czdjofbLD98kw 
_model_server_result.datetime_utc      '2024-10-10 02:33:11' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cco 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"S","auth_seq_id":401}' 
#
_entry.id    8CCO 
#
_exptl.entry_id    8CCO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              709.67 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            Jasplakinolide 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CCO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CCO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 G N N 
? 2 J N N 
? 2 M N N 
? 2 P N N 
? 2 S N N 
? 2 V N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 74 A GLU 72 1_555 A N HIC 75 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C HIC 75 A HIC 73 1_555 A N GLY 76 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 B C GLU 74 B GLU 72 1_555 B N HIC 75 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 B C HIC 75 B HIC 73 1_555 B N GLY 76 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 C C GLU 74 C GLU 72 1_555 C N HIC 75 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 C C HIC 75 C HIC 73 1_555 C N GLY 76 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 D C GLU 74 D GLU 72 1_555 D N HIC 75 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale8 D C HIC 75 D HIC 73 1_555 D N GLY 76 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 E C GLU 74 E GLU 72 1_555 E N HIC 75 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 E C HIC 75 E HIC 73 1_555 E N GLY 76 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 F C GLU 74 F GLU 72 1_555 F N HIC 75 F HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale12 F C HIC 75 F HIC 73 1_555 F N GLY 76 F GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 H O2B ADP . A ADP 402 1_555 I MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc2 K O2B ADP . B ADP 402 1_555 L MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc3 N O2B ADP . C ADP 402 1_555 O MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc4 Q O2B ADP . D ADP 402 1_555 R MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc5 T O2B ADP . E ADP 402 1_555 U MG MG . E MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc6 W O2B ADP . F ADP 402 1_555 X MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C36 H45 Br N4 O6' 
_chem_comp.formula_weight    709.67 
_chem_comp.id                9UE 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              Jasplakinolide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O2 C7 9UE doub 1 n n 
C5 C6 9UE sing 2 n n 
C5 C4 9UE sing 3 n n 
C C1 9UE sing 4 n n 
C19 N1 9UE sing 5 n n 
C6 C29 9UE sing 6 n n 
C6 N 9UE sing 7 n n 
O1 C4 9UE doub 8 n n 
C4 O 9UE sing 9 n n 
C34 C29 9UE doub 10 n y 
C34 C33 9UE sing 11 n y 
C7 N 9UE sing 12 n n 
C7 C8 9UE sing 13 n n 
BR C28 9UE sing 14 n n 
C1 C2 9UE sing 15 n n 
C1 C15 9UE sing 16 n n 
C29 C30 9UE sing 17 n y 
C20 C8 9UE sing 18 n n 
C20 C21 9UE sing 19 n n 
O C3 9UE sing 20 n n 
C33 C32 9UE doub 21 n y 
C3 C2 9UE sing 22 n n 
C3 C35 9UE sing 23 n n 
N1 C8 9UE sing 24 n n 
N1 C9 9UE sing 25 n n 
C10 C18 9UE sing 26 n n 
C10 C9 9UE sing 27 n n 
C10 N2 9UE sing 28 n n 
C17 C12 9UE sing 29 n n 
C15 C14 9UE doub 30 e n 
C9 O3 9UE doub 31 n n 
C30 C31 9UE doub 32 n y 
C32 C31 9UE sing 33 n y 
C32 O5 9UE sing 34 n n 
C28 C21 9UE doub 35 n y 
C28 N3 9UE sing 36 n y 
C21 C22 9UE sing 37 n y 
N2 C11 9UE sing 38 n n 
C11 O4 9UE doub 39 n n 
C11 C12 9UE sing 40 n n 
C14 C16 9UE sing 41 n n 
C14 C13 9UE sing 42 n n 
C12 C13 9UE sing 43 n n 
N3 C27 9UE sing 44 n y 
C22 C23 9UE doub 45 n y 
C22 C27 9UE sing 46 n y 
C23 C24 9UE sing 47 n y 
C27 C26 9UE doub 48 n y 
C24 C25 9UE doub 49 n y 
C26 C25 9UE sing 50 n y 
C35 H1 9UE sing 51 n n 
C35 H2 9UE sing 52 n n 
C35 H3 9UE sing 53 n n 
C34 H4 9UE sing 54 n n 
C33 H5 9UE sing 55 n n 
C31 H6 9UE sing 56 n n 
C30 H7 9UE sing 57 n n 
C26 H8 9UE sing 58 n n 
C25 H9 9UE sing 59 n n 
C24 H10 9UE sing 60 n n 
C1 H11 9UE sing 61 n n 
C2 H12 9UE sing 62 n n 
C2 H13 9UE sing 63 n n 
C3 H14 9UE sing 64 n n 
C5 H15 9UE sing 65 n n 
C5 H16 9UE sing 66 n n 
C6 H17 9UE sing 67 n n 
C23 H18 9UE sing 68 n n 
C20 H19 9UE sing 69 n n 
C20 H20 9UE sing 70 n n 
C19 H21 9UE sing 71 n n 
C19 H22 9UE sing 72 n n 
C19 H23 9UE sing 73 n n 
C18 H24 9UE sing 74 n n 
C18 H25 9UE sing 75 n n 
C18 H26 9UE sing 76 n n 
C17 H27 9UE sing 77 n n 
C17 H28 9UE sing 78 n n 
C17 H29 9UE sing 79 n n 
N3 H30 9UE sing 80 n n 
C16 H31 9UE sing 81 n n 
C16 H32 9UE sing 82 n n 
C16 H33 9UE sing 83 n n 
C15 H34 9UE sing 84 n n 
N2 H35 9UE sing 85 n n 
C13 H36 9UE sing 86 n n 
C13 H37 9UE sing 87 n n 
C12 H38 9UE sing 88 n n 
C10 H39 9UE sing 89 n n 
C8 H40 9UE sing 90 n n 
O5 H41 9UE sing 91 n n 
N H42 9UE sing 92 n n 
C H43 9UE sing 93 n n 
C H44 9UE sing 94 n n 
C H45 9UE sing 95 n n 
#
_atom_sites.entry_id                     8CCO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 9UE A 1 401 380 9UE 9UE . 
H 3 ADP A 1 402 401 ADP ADP . 
I 4 MG A 1 403 402 MG MG . 
J 2 9UE B 1 401 380 9UE 9UE . 
K 3 ADP B 1 402 401 ADP ADP . 
L 4 MG B 1 403 402 MG MG . 
M 2 9UE C 1 401 380 9UE 9UE . 
N 3 ADP C 1 402 401 ADP ADP . 
O 4 MG C 1 403 402 MG MG . 
P 2 9UE D 1 401 380 9UE 9UE . 
Q 3 ADP D 1 402 401 ADP ADP . 
R 4 MG D 1 403 402 MG MG . 
S 2 9UE E 1 401 380 9UE 9UE . 
T 3 ADP E 1 402 401 ADP ADP . 
U 4 MG E 1 403 402 MG MG . 
V 2 9UE F 1 401 380 9UE 9UE . 
W 3 ADP F 1 402 401 ADP ADP . 
X 4 MG F 1 403 402 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C35 9UE . . . S 2 183.043 195.66 234.711 1 57.62 ? C35 9UE 401 E 1 
HETATM 2 C C34 9UE . . . S 2 176.237 195.077 235.716 1 57.62 ? C34 9UE 401 E 1 
HETATM 3 C C33 9UE . . . S 2 174.987 195.652 235.903 1 57.62 ? C33 9UE 401 E 1 
HETATM 4 C C32 9UE . . . S 2 173.854 194.956 235.484 1 57.62 ? C32 9UE 401 E 1 
HETATM 5 C C31 9UE . . . S 2 173.946 193.703 234.884 1 57.62 ? C31 9UE 401 E 1 
HETATM 6 C C30 9UE . . . S 2 175.204 193.149 234.707 1 57.62 ? C30 9UE 401 E 1 
HETATM 7 C C29 9UE . . . S 2 176.351 193.827 235.119 1 57.62 ? C29 9UE 401 E 1 
HETATM 8 C C28 9UE . . . S 2 175.556 186.426 235.63 1 57.62 ? C28 9UE 401 E 1 
HETATM 9 C C27 9UE . . . S 2 174.78 187.048 237.637 1 57.62 ? C27 9UE 401 E 1 
HETATM 10 C C26 9UE . . . S 2 174.232 187.104 238.927 1 57.62 ? C26 9UE 401 E 1 
HETATM 11 C C25 9UE . . . S 2 174.154 188.343 239.52 1 57.62 ? C25 9UE 401 E 1 
HETATM 12 C C24 9UE . . . S 2 174.601 189.507 238.862 1 57.62 ? C24 9UE 401 E 1 
HETATM 13 O O2 9UE . . . S 2 177.243 190.991 233.345 1 57.62 ? O2 9UE 401 E 1 
HETATM 14 C C1 9UE . . . S 2 182.716 191.807 234.95 1 57.62 ? C1 9UE 401 E 1 
HETATM 15 O O1 9UE . . . S 2 180.015 194.285 233.474 1 57.62 ? O1 9UE 401 E 1 
HETATM 16 C C2 9UE . . . S 2 183.416 193.152 234.823 1 57.62 ? C2 9UE 401 E 1 
HETATM 17 C C3 9UE . . . S 2 182.405 194.28 234.531 1 57.62 ? C3 9UE 401 E 1 
HETATM 18 O O3 9UE . . . S 2 179.123 188.228 236.942 1 57.62 ? O3 9UE 401 E 1 
HETATM 19 C C4 9UE . . . S 2 180.037 194.174 234.685 1 57.62 ? C4 9UE 401 E 1 
HETATM 20 C C5 9UE . . . S 2 178.847 194.055 235.587 1 57.62 ? C5 9UE 401 E 1 
HETATM 21 O O4 9UE . . . S 2 183.554 186.931 235.108 1 57.62 ? O4 9UE 401 E 1 
HETATM 22 C C6 9UE . . . S 2 177.717 193.224 234.927 1 57.62 ? C6 9UE 401 E 1 
HETATM 23 C C23 9UE . . . S 2 175.139 189.454 237.595 1 57.62 ? C23 9UE 401 E 1 
HETATM 24 C C22 9UE . . . S 2 175.237 188.212 236.96 1 57.62 ? C22 9UE 401 E 1 
HETATM 25 C C21 9UE . . . S 2 175.731 187.788 235.681 1 57.62 ? C21 9UE 401 E 1 
HETATM 26 C C20 9UE . . . S 2 176.305 188.587 234.589 1 57.62 ? C20 9UE 401 E 1 
HETATM 27 C C19 9UE . . . S 2 179.166 188.602 233.352 1 57.62 ? C19 9UE 401 E 1 
HETATM 28 C C18 9UE . . . S 2 180.569 185.878 235.42 1 57.62 ? C18 9UE 401 E 1 
HETATM 29 C C17 9UE . . . S 2 185.197 186.76 237.362 1 57.62 ? C17 9UE 401 E 1 
HETATM 30 N N3 9UE . . . S 2 174.984 185.945 236.803 1 57.62 ? N3 9UE 401 E 1 
HETATM 31 C C16 9UE . . . S 2 182.889 190.713 237.668 1 57.62 ? C16 9UE 401 E 1 
HETATM 32 C C15 9UE . . . S 2 183.705 190.76 235.341 1 57.62 ? C15 9UE 401 E 1 
HETATM 33 N N2 9UE . . . S 2 181.848 187.729 236.4 1 57.62 ? N2 9UE 401 E 1 
HETATM 34 C C14 9UE . . . S 2 183.786 190.26 236.573 1 57.62 ? C14 9UE 401 E 1 
HETATM 35 C C13 9UE . . . S 2 184.801 189.21 236.88 1 57.62 ? C13 9UE 401 E 1 
HETATM 36 C C12 9UE . . . S 2 184.162 187.864 237.241 1 57.62 ? C12 9UE 401 E 1 
HETATM 37 N N1 9UE . . . S 2 178.775 188.686 234.751 1 57.62 ? N1 9UE 401 E 1 
HETATM 38 C C11 9UE . . . S 2 183.195 187.458 236.148 1 57.62 ? C11 9UE 401 E 1 
HETATM 39 C C10 9UE . . . S 2 180.818 187.389 235.428 1 57.62 ? C10 9UE 401 E 1 
HETATM 40 C C9 9UE . . . S 2 179.523 188.12 235.792 1 57.62 ? C9 9UE 401 E 1 
HETATM 41 C C8 9UE . . . S 2 177.528 189.373 235.113 1 57.62 ? C8 9UE 401 E 1 
HETATM 42 C C7 9UE . . . S 2 177.5 190.788 234.522 1 57.62 ? C7 9UE 401 E 1 
HETATM 43 O O5 9UE . . . S 2 172.62 195.513 235.664 1 57.62 ? O5 9UE 401 E 1 
HETATM 44 BR BR 9UE . . . S 2 176.018 185.286 234.184 1 57.62 ? BR 9UE 401 E 1 
HETATM 45 N N 9UE . . . S 2 177.742 191.836 235.405 1 57.62 ? N 9UE 401 E 1 
HETATM 46 O O 9UE . . . S 2 181.24 194.15 235.327 1 57.62 ? O 9UE 401 E 1 
HETATM 47 C C 9UE . . . S 2 182.111 191.42 233.61 1 57.62 ? C 9UE 401 E 1 
#
_model_server_stats.io_time_ms              22 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    19 
_model_server_stats.query_time_ms           272 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           47 
#