data_8CCO
#
_model_server_result.job_id            eHiV2Vsk7aDJWMqMdIFOpg 
_model_server_result.datetime_utc      '2024-10-10 02:27:07' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cco 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"W","auth_seq_id":402}' 
#
_entry.id    8CCO 
#
_exptl.entry_id    8CCO 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              427.201 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            "ADENOSINE-5'-DIPHOSPHATE" 
_entity.pdbx_number_of_molecules    6 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CCO 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CCO 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    hexameric 
_pdbx_struct_assembly.oligomeric_count      6 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 H N N 
? 3 K N N 
? 3 N N N 
? 3 Q N N 
? 3 T N N 
? 3 W N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A C GLU 74 A GLU 72 1_555 A N HIC 75 A HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale2 A C HIC 75 A HIC 73 1_555 A N GLY 76 A GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale3 B C GLU 74 B GLU 72 1_555 B N HIC 75 B HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale4 B C HIC 75 B HIC 73 1_555 B N GLY 76 B GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale5 C C GLU 74 C GLU 72 1_555 C N HIC 75 C HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale6 C C HIC 75 C HIC 73 1_555 C N GLY 76 C GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale7 D C GLU 74 D GLU 72 1_555 D N HIC 75 D HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale8 D C HIC 75 D HIC 73 1_555 D N GLY 76 D GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale9 E C GLU 74 E GLU 72 1_555 E N HIC 75 E HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.331 ? 
covale ? covale10 E C HIC 75 E HIC 73 1_555 E N GLY 76 E GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
covale ? covale11 F C GLU 74 F GLU 72 1_555 F N HIC 75 F HIC 73 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.332 ? 
covale ? covale12 F C HIC 75 F HIC 73 1_555 F N GLY 76 F GLY 74 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.329 ? 
metalc ? metalc1 H O2B ADP . A ADP 402 1_555 I MG MG . A MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc2 K O2B ADP . B ADP 402 1_555 L MG MG . B MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc3 N O2B ADP . C ADP 402 1_555 O MG MG . C MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc4 Q O2B ADP . D ADP 402 1_555 R MG MG . D MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
metalc ? metalc5 T O2B ADP . E ADP 402 1_555 U MG MG . E MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.036 ? 
metalc ? metalc6 W O2B ADP . F ADP 402 1_555 X MG MG . F MG 403 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
#
_chem_comp.formula           'C10 H15 N5 O10 P2' 
_chem_comp.formula_weight    427.201 
_chem_comp.id                ADP 
_chem_comp.mon_nstd_flag     n 
_chem_comp.name              "ADENOSINE-5'-DIPHOSPHATE" 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
PB O1B ADP doub 96 n n 
PB O2B ADP sing 97 n n 
PB O3B ADP sing 98 n n 
PB O3A ADP sing 99 n n 
O2B HOB2 ADP sing 100 n n 
O3B HOB3 ADP sing 101 n n 
PA O1A ADP doub 102 n n 
PA O2A ADP sing 103 n n 
PA O3A ADP sing 104 n n 
PA O5' ADP sing 105 n n 
O2A HOA2 ADP sing 106 n n 
O5' C5' ADP sing 107 n n 
C5' C4' ADP sing 108 n n 
C5' "H5'1" ADP sing 109 n n 
C5' "H5'2" ADP sing 110 n n 
C4' O4' ADP sing 111 n n 
C4' C3' ADP sing 112 n n 
C4' H4' ADP sing 113 n n 
O4' C1' ADP sing 114 n n 
C3' O3' ADP sing 115 n n 
C3' C2' ADP sing 116 n n 
C3' H3' ADP sing 117 n n 
O3' HO3' ADP sing 118 n n 
C2' O2' ADP sing 119 n n 
C2' C1' ADP sing 120 n n 
C2' H2' ADP sing 121 n n 
O2' HO2' ADP sing 122 n n 
C1' N9 ADP sing 123 n n 
C1' H1' ADP sing 124 n n 
N9 C8 ADP sing 125 n y 
N9 C4 ADP sing 126 n y 
C8 N7 ADP doub 127 n y 
C8 H8 ADP sing 128 n n 
N7 C5 ADP sing 129 n y 
C5 C6 ADP sing 130 n y 
C5 C4 ADP doub 131 n y 
C6 N6 ADP sing 132 n n 
C6 N1 ADP doub 133 n y 
N6 HN61 ADP sing 134 n n 
N6 HN62 ADP sing 135 n n 
N1 C2 ADP sing 136 n y 
C2 N3 ADP doub 137 n y 
C2 H2 ADP sing 138 n n 
N3 C4 ADP sing 139 n y 
#
_atom_sites.entry_id                     8CCO 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
G 2 9UE A 1 401 380 9UE 9UE . 
H 3 ADP A 1 402 401 ADP ADP . 
I 4 MG A 1 403 402 MG MG . 
J 2 9UE B 1 401 380 9UE 9UE . 
K 3 ADP B 1 402 401 ADP ADP . 
L 4 MG B 1 403 402 MG MG . 
M 2 9UE C 1 401 380 9UE 9UE . 
N 3 ADP C 1 402 401 ADP ADP . 
O 4 MG C 1 403 402 MG MG . 
P 2 9UE D 1 401 380 9UE 9UE . 
Q 3 ADP D 1 402 401 ADP ADP . 
R 4 MG D 1 403 402 MG MG . 
S 2 9UE E 1 401 380 9UE 9UE . 
T 3 ADP E 1 402 401 ADP ADP . 
U 4 MG E 1 403 402 MG MG . 
V 2 9UE F 1 401 380 9UE 9UE . 
W 3 ADP F 1 402 401 ADP ADP . 
X 4 MG F 1 403 402 MG MG . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 P PB ADP . . . W 3 162.643 172.568 288.534 1 32.94 ? PB ADP 402 F 1 
HETATM 2 O O1B ADP . . . W 3 163.23 173.84 287.977 1 32.94 ? O1B ADP 402 F 1 
HETATM 3 O O2B ADP . . . W 3 162.766 172.418 290.031 1 32.94 ? O2B ADP 402 F 1 
HETATM 4 O O3B ADP . . . W 3 161.281 172.209 287.992 1 32.94 ? O3B ADP 402 F 1 
HETATM 5 P PA ADP . . . W 3 163.111 169.923 287.701 1 32.94 ? PA ADP 402 F 1 
HETATM 6 O O1A ADP . . . W 3 162.074 169.956 286.604 1 32.94 ? O1A ADP 402 F 1 
HETATM 7 O O2A ADP . . . W 3 162.809 169.28 289.032 1 32.94 ? O2A ADP 402 F 1 
HETATM 8 O O3A ADP . . . W 3 163.614 171.431 287.947 1 32.94 ? O3A ADP 402 F 1 
HETATM 9 O O5' ADP . . . W 3 164.462 169.289 287.108 1 32.94 ? O5' ADP 402 F 1 
HETATM 10 C C5' ADP . . . W 3 164.595 169.047 285.712 1 32.94 ? C5' ADP 402 F 1 
HETATM 11 C C4' ADP . . . W 3 166.053 168.728 285.423 1 32.94 ? C4' ADP 402 F 1 
HETATM 12 O O4' ADP . . . W 3 166.346 167.41 285.886 1 32.94 ? O4' ADP 402 F 1 
HETATM 13 C C3' ADP . . . W 3 166.356 168.771 283.937 1 32.94 ? C3' ADP 402 F 1 
HETATM 14 O O3' ADP . . . W 3 167.224 169.872 283.655 1 32.94 ? O3' ADP 402 F 1 
HETATM 15 C C2' ADP . . . W 3 167.052 167.466 283.615 1 32.94 ? C2' ADP 402 F 1 
HETATM 16 O O2' ADP . . . W 3 168.381 167.732 283.159 1 32.94 ? O2' ADP 402 F 1 
HETATM 17 C C1' ADP . . . W 3 167.096 166.68 284.916 1 32.94 ? C1' ADP 402 F 1 
HETATM 18 N N9 ADP . . . W 3 166.476 165.345 284.732 1 32.94 ? N9 ADP 402 F 1 
HETATM 19 C C8 ADP . . . W 3 165.164 165.108 284.544 1 32.94 ? C8 ADP 402 F 1 
HETATM 20 N N7 ADP . . . W 3 164.917 163.781 284.41 1 32.94 ? N7 ADP 402 F 1 
HETATM 21 C C5 ADP . . . W 3 166.095 163.141 284.514 1 32.94 ? C5 ADP 402 F 1 
HETATM 22 C C6 ADP . . . W 3 166.552 161.733 284.465 1 32.94 ? C6 ADP 402 F 1 
HETATM 23 N N6 ADP . . . W 3 165.674 160.719 284.273 1 32.94 ? N6 ADP 402 F 1 
HETATM 24 N N1 ADP . . . W 3 167.874 161.496 284.617 1 32.94 ? N1 ADP 402 F 1 
HETATM 25 C C2 ADP . . . W 3 168.755 162.495 284.808 1 32.94 ? C2 ADP 402 F 1 
HETATM 26 N N3 ADP . . . W 3 168.411 163.794 284.863 1 32.94 ? N3 ADP 402 F 1 
HETATM 27 C C4 ADP . . . W 3 167.119 164.176 284.724 1 32.94 ? C4 ADP 402 F 1 
#
_model_server_stats.io_time_ms              21 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    22 
_model_server_stats.query_time_ms           268 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           27 
#