data_8CCV
#
_model_server_result.job_id            onR5L7zA7Blt0GaZfHd2Tg 
_model_server_result.datetime_utc      '2024-11-06 16:32:55' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ccv 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"E","auth_seq_id":301}' 
#
_entry.id    8CCV 
#
_exptl.entry_id    8CCV 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              456.344 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'FLAVIN MONONUCLEOTIDE' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CCV 
_cell.length_a            56.862 
_cell.length_b            56.862 
_cell.length_c            263.866 
_cell.Z_PDB               16 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CCV 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        92 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 41 21 2' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 E N N 
#
_chem_comp.formula           'C17 H21 N4 O9 P' 
_chem_comp.formula_weight    456.344 
_chem_comp.id                FMN 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'FLAVIN MONONUCLEOTIDE' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     'RIBOFLAVIN MONOPHOSPHATE' 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N1 C2 FMN sing 83 n n 
N1 C10 FMN doub 84 n n 
C2 O2 FMN doub 85 n n 
C2 N3 FMN sing 86 n n 
N3 C4 FMN sing 87 n n 
N3 HN3 FMN sing 88 n n 
C4 O4 FMN doub 89 n n 
C4 C4A FMN sing 90 n n 
C4A N5 FMN doub 91 n n 
C4A C10 FMN sing 92 n n 
N5 C5A FMN sing 93 n n 
C5A C6 FMN doub 94 n y 
C5A C9A FMN sing 95 n y 
C6 C7 FMN sing 96 n y 
C6 H6 FMN sing 97 n n 
C7 C7M FMN sing 98 n n 
C7 C8 FMN doub 99 n y 
C7M HM71 FMN sing 100 n n 
C7M HM72 FMN sing 101 n n 
C7M HM73 FMN sing 102 n n 
C8 C8M FMN sing 103 n n 
C8 C9 FMN sing 104 n y 
C8M HM81 FMN sing 105 n n 
C8M HM82 FMN sing 106 n n 
C8M HM83 FMN sing 107 n n 
C9 C9A FMN doub 108 n y 
C9 H9 FMN sing 109 n n 
C9A N10 FMN sing 110 n n 
N10 C10 FMN sing 111 n n 
N10 C1' FMN sing 112 n n 
C1' C2' FMN sing 113 n n 
C1' "H1'1" FMN sing 114 n n 
C1' "H1'2" FMN sing 115 n n 
C2' O2' FMN sing 116 n n 
C2' C3' FMN sing 117 n n 
C2' H2' FMN sing 118 n n 
O2' HO2' FMN sing 119 n n 
C3' O3' FMN sing 120 n n 
C3' C4' FMN sing 121 n n 
C3' H3' FMN sing 122 n n 
O3' HO3' FMN sing 123 n n 
C4' O4' FMN sing 124 n n 
C4' C5' FMN sing 125 n n 
C4' H4' FMN sing 126 n n 
O4' HO4' FMN sing 127 n n 
C5' O5' FMN sing 128 n n 
C5' "H5'1" FMN sing 129 n n 
C5' "H5'2" FMN sing 130 n n 
O5' P FMN sing 131 n n 
P O1P FMN doub 132 n n 
P O2P FMN sing 133 n n 
P O3P FMN sing 134 n n 
O2P HOP2 FMN sing 135 n n 
O3P HOP3 FMN sing 136 n n 
#
_atom_sites.entry_id                     8CCV 
_atom_sites.fract_transf_matrix[1][1]    0.017586 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017586 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.00379 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 FMN A 1 301 1 FMN FMN . 
D 3 NIO A 1 302 3 NIO NIO . 
E 2 FMN B 1 301 2 FMN FMN . 
F 3 NIO B 1 302 4 NIO NIO . 
G 4 HOH A 1 401 6 HOH HOH . 
G 4 HOH A 2 402 206 HOH HOH . 
G 4 HOH A 3 403 51 HOH HOH . 
G 4 HOH A 4 404 82 HOH HOH . 
G 4 HOH A 5 405 43 HOH HOH . 
G 4 HOH A 6 406 16 HOH HOH . 
G 4 HOH A 7 407 62 HOH HOH . 
G 4 HOH A 8 408 2 HOH HOH . 
G 4 HOH A 9 409 195 HOH HOH . 
G 4 HOH A 10 410 2 HOH HOH . 
G 4 HOH A 11 411 10 HOH HOH . 
G 4 HOH A 12 412 185 HOH HOH . 
G 4 HOH A 13 413 39 HOH HOH . 
G 4 HOH A 14 414 10 HOH HOH . 
G 4 HOH A 15 415 41 HOH HOH . 
G 4 HOH A 16 416 170 HOH HOH . 
G 4 HOH A 17 417 202 HOH HOH . 
G 4 HOH A 18 418 9 HOH HOH . 
G 4 HOH A 19 419 159 HOH HOH . 
G 4 HOH A 20 420 171 HOH HOH . 
G 4 HOH A 21 421 27 HOH HOH . 
G 4 HOH A 22 422 144 HOH HOH . 
G 4 HOH A 23 423 61 HOH HOH . 
G 4 HOH A 24 424 169 HOH HOH . 
G 4 HOH A 25 425 1 HOH HOH . 
G 4 HOH A 26 426 12 HOH HOH . 
G 4 HOH A 27 427 146 HOH HOH . 
G 4 HOH A 28 428 205 HOH HOH . 
G 4 HOH A 29 429 193 HOH HOH . 
G 4 HOH A 30 430 96 HOH HOH . 
G 4 HOH A 31 431 224 HOH HOH . 
G 4 HOH A 32 432 209 HOH HOH . 
G 4 HOH A 33 433 30 HOH HOH . 
G 4 HOH A 34 434 217 HOH HOH . 
G 4 HOH A 35 435 6 HOH HOH . 
G 4 HOH A 36 436 46 HOH HOH . 
G 4 HOH A 37 437 31 HOH HOH . 
G 4 HOH A 38 438 28 HOH HOH . 
G 4 HOH A 39 439 9 HOH HOH . 
G 4 HOH A 40 440 213 HOH HOH . 
G 4 HOH A 41 441 20 HOH HOH . 
G 4 HOH A 42 442 4 HOH HOH . 
G 4 HOH A 43 443 243 HOH HOH . 
G 4 HOH A 44 444 17 HOH HOH . 
G 4 HOH A 45 445 111 HOH HOH . 
G 4 HOH A 46 446 20 HOH HOH . 
G 4 HOH A 47 447 30 HOH HOH . 
G 4 HOH A 48 448 17 HOH HOH . 
G 4 HOH A 49 449 211 HOH HOH . 
G 4 HOH A 50 450 158 HOH HOH . 
G 4 HOH A 51 451 15 HOH HOH . 
G 4 HOH A 52 452 179 HOH HOH . 
G 4 HOH A 53 453 49 HOH HOH . 
G 4 HOH A 54 454 56 HOH HOH . 
G 4 HOH A 55 455 178 HOH HOH . 
G 4 HOH A 56 456 97 HOH HOH . 
G 4 HOH A 57 457 194 HOH HOH . 
G 4 HOH A 58 458 8 HOH HOH . 
G 4 HOH A 59 459 24 HOH HOH . 
G 4 HOH A 60 460 221 HOH HOH . 
G 4 HOH A 61 461 175 HOH HOH . 
G 4 HOH A 62 462 160 HOH HOH . 
G 4 HOH A 63 463 23 HOH HOH . 
G 4 HOH A 64 464 100 HOH HOH . 
G 4 HOH A 65 465 264 HOH HOH . 
G 4 HOH A 66 466 75 HOH HOH . 
G 4 HOH A 67 467 13 HOH HOH . 
G 4 HOH A 68 468 66 HOH HOH . 
G 4 HOH A 69 469 225 HOH HOH . 
G 4 HOH A 70 470 72 HOH HOH . 
G 4 HOH A 71 471 89 HOH HOH . 
G 4 HOH A 72 472 80 HOH HOH . 
G 4 HOH A 73 473 216 HOH HOH . 
G 4 HOH A 74 474 162 HOH HOH . 
G 4 HOH A 75 475 121 HOH HOH . 
G 4 HOH A 76 476 36 HOH HOH . 
G 4 HOH A 77 477 11 HOH HOH . 
G 4 HOH A 78 478 25 HOH HOH . 
G 4 HOH A 79 479 40 HOH HOH . 
G 4 HOH A 80 480 183 HOH HOH . 
G 4 HOH A 81 481 289 HOH HOH . 
G 4 HOH A 82 482 57 HOH HOH . 
G 4 HOH A 83 483 157 HOH HOH . 
G 4 HOH A 84 484 139 HOH HOH . 
G 4 HOH A 85 485 238 HOH HOH . 
G 4 HOH A 86 486 208 HOH HOH . 
G 4 HOH A 87 487 247 HOH HOH . 
G 4 HOH A 88 488 293 HOH HOH . 
G 4 HOH A 89 489 244 HOH HOH . 
G 4 HOH A 90 490 155 HOH HOH . 
G 4 HOH A 91 491 37 HOH HOH . 
G 4 HOH A 92 492 77 HOH HOH . 
G 4 HOH A 93 493 291 HOH HOH . 
G 4 HOH A 94 494 53 HOH HOH . 
G 4 HOH A 95 495 42 HOH HOH . 
H 4 HOH B 1 401 148 HOH HOH . 
H 4 HOH B 2 402 234 HOH HOH . 
H 4 HOH B 3 403 203 HOH HOH . 
H 4 HOH B 4 404 51 HOH HOH . 
H 4 HOH B 5 405 22 HOH HOH . 
H 4 HOH B 6 406 85 HOH HOH . 
H 4 HOH B 7 407 35 HOH HOH . 
H 4 HOH B 8 408 165 HOH HOH . 
H 4 HOH B 9 409 28 HOH HOH . 
H 4 HOH B 10 410 33 HOH HOH . 
H 4 HOH B 11 411 32 HOH HOH . 
H 4 HOH B 12 412 112 HOH HOH . 
H 4 HOH B 13 413 69 HOH HOH . 
H 4 HOH B 14 414 108 HOH HOH . 
H 4 HOH B 15 415 7 HOH HOH . 
H 4 HOH B 16 416 22 HOH HOH . 
H 4 HOH B 17 417 266 HOH HOH . 
H 4 HOH B 18 418 142 HOH HOH . 
H 4 HOH B 19 419 5 HOH HOH . 
H 4 HOH B 20 420 174 HOH HOH . 
H 4 HOH B 21 421 27 HOH HOH . 
H 4 HOH B 22 422 52 HOH HOH . 
H 4 HOH B 23 423 18 HOH HOH . 
H 4 HOH B 24 424 36 HOH HOH . 
H 4 HOH B 25 425 223 HOH HOH . 
H 4 HOH B 26 426 201 HOH HOH . 
H 4 HOH B 27 427 11 HOH HOH . 
H 4 HOH B 28 428 230 HOH HOH . 
H 4 HOH B 29 429 32 HOH HOH . 
H 4 HOH B 30 430 71 HOH HOH . 
H 4 HOH B 31 431 173 HOH HOH . 
H 4 HOH B 32 432 180 HOH HOH . 
H 4 HOH B 33 433 8 HOH HOH . 
H 4 HOH B 34 434 3 HOH HOH . 
H 4 HOH B 35 435 35 HOH HOH . 
H 4 HOH B 36 436 192 HOH HOH . 
H 4 HOH B 37 437 19 HOH HOH . 
H 4 HOH B 38 438 60 HOH HOH . 
H 4 HOH B 39 439 14 HOH HOH . 
H 4 HOH B 40 440 93 HOH HOH . 
H 4 HOH B 41 441 172 HOH HOH . 
H 4 HOH B 42 442 83 HOH HOH . 
H 4 HOH B 43 443 116 HOH HOH . 
H 4 HOH B 44 444 16 HOH HOH . 
H 4 HOH B 45 445 54 HOH HOH . 
H 4 HOH B 46 446 166 HOH HOH . 
H 4 HOH B 47 447 109 HOH HOH . 
H 4 HOH B 48 448 181 HOH HOH . 
H 4 HOH B 49 449 44 HOH HOH . 
H 4 HOH B 50 450 21 HOH HOH . 
H 4 HOH B 51 451 38 HOH HOH . 
H 4 HOH B 52 452 187 HOH HOH . 
H 4 HOH B 53 453 26 HOH HOH . 
H 4 HOH B 54 454 29 HOH HOH . 
H 4 HOH B 55 455 250 HOH HOH . 
H 4 HOH B 56 456 23 HOH HOH . 
H 4 HOH B 57 457 90 HOH HOH . 
H 4 HOH B 58 458 52 HOH HOH . 
H 4 HOH B 59 459 56 HOH HOH . 
H 4 HOH B 60 460 18 HOH HOH . 
H 4 HOH B 61 461 196 HOH HOH . 
H 4 HOH B 62 462 13 HOH HOH . 
H 4 HOH B 63 463 34 HOH HOH . 
H 4 HOH B 64 464 45 HOH HOH . 
H 4 HOH B 65 465 86 HOH HOH . 
H 4 HOH B 66 466 5 HOH HOH . 
H 4 HOH B 67 467 25 HOH HOH . 
H 4 HOH B 68 468 39 HOH HOH . 
H 4 HOH B 69 469 49 HOH HOH . 
H 4 HOH B 70 470 154 HOH HOH . 
H 4 HOH B 71 471 134 HOH HOH . 
H 4 HOH B 72 472 70 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N1 FMN . . . E 2 35.137 10.376 19.218 1 63.94 ? N1 FMN 301 B 1 
HETATM 2 C C2 FMN . . . E 2 36.442 10.403 18.884 1 72.74 ? C2 FMN 301 B 1 
HETATM 3 O O2 FMN . . . E 2 37.275 10.97 19.623 1 81.81 ? O2 FMN 301 B 1 
HETATM 4 N N3 FMN . . . E 2 36.875 9.82 17.693 1 57.47 ? N3 FMN 301 B 1 
HETATM 5 C C4 FMN . . . E 2 36 9.193 16.82 1 61.04 ? C4 FMN 301 B 1 
HETATM 6 O O4 FMN . . . E 2 36.415 8.699 15.784 1 59.15 ? O4 FMN 301 B 1 
HETATM 7 C C4A FMN . . . E 2 34.621 9.205 17.128 1 54.16 ? C4A FMN 301 B 1 
HETATM 8 N N5 FMN . . . E 2 33.77 8.652 16.288 1 50.87 ? N5 FMN 301 B 1 
HETATM 9 C C5A FMN . . . E 2 32.463 8.57 16.694 1 57.14 ? C5A FMN 301 B 1 
HETATM 10 C C6 FMN . . . E 2 31.541 7.849 15.905 1 51.02 ? C6 FMN 301 B 1 
HETATM 11 C C7 FMN . . . E 2 30.251 7.601 16.34 1 39.69 ? C7 FMN 301 B 1 
HETATM 12 C C7M FMN . . . E 2 29.317 6.753 15.525 1 38.42 ? C7M FMN 301 B 1 
HETATM 13 C C8 FMN . . . E 2 29.789 8.226 17.498 1 49.2 ? C8 FMN 301 B 1 
HETATM 14 C C8M FMN . . . E 2 28.373 8.032 17.983 1 53.95 ? C8M FMN 301 B 1 
HETATM 15 C C9 FMN . . . E 2 30.64 9.039 18.224 1 48.53 ? C9 FMN 301 B 1 
HETATM 16 C C9A FMN . . . E 2 32.007 9.171 17.895 1 54.07 ? C9A FMN 301 B 1 
HETATM 17 N N10 FMN . . . E 2 32.935 9.864 18.687 1 50.57 ? N10 FMN 301 B 1 
HETATM 18 C C10 FMN . . . E 2 34.273 9.813 18.39 1 51.88 ? C10 FMN 301 B 1 
HETATM 19 C C1' FMN . . . E 2 32.53 10.449 19.99 1 42.12 ? C1' FMN 301 B 1 
HETATM 20 C C2' FMN . . . E 2 31.651 11.657 19.754 1 37.9 ? C2' FMN 301 B 1 
HETATM 21 O O2' FMN . . . E 2 32.341 12.822 19.369 1 40.55 ? O2' FMN 301 B 1 
HETATM 22 C C3' FMN . . . E 2 30.747 11.879 20.962 1 42.16 ? C3' FMN 301 B 1 
HETATM 23 O O3' FMN . . . E 2 29.818 10.763 21.036 1 34.24 ? O3' FMN 301 B 1 
HETATM 24 C C4' FMN . . . E 2 29.992 13.216 20.95 1 41.23 ? C4' FMN 301 B 1 
HETATM 25 O O4' FMN . . . E 2 30.906 14.336 20.869 1 39.79 ? O4' FMN 301 B 1 
HETATM 26 C C5' FMN . . . E 2 29.099 13.307 22.165 1 43.67 ? C5' FMN 301 B 1 
HETATM 27 O O5' FMN . . . E 2 29.946 13.292 23.351 1 36.68 ? O5' FMN 301 B 1 
HETATM 28 P P FMN . . . E 2 29.838 12.13 24.448 1 41.07 ? P FMN 301 B 1 
HETATM 29 O O1P FMN . . . E 2 31.05 12.431 25.423 1 42.47 ? O1P FMN 301 B 1 
HETATM 30 O O2P FMN . . . E 2 29.956 10.762 23.69 1 34.95 ? O2P FMN 301 B 1 
HETATM 31 O O3P FMN . . . E 2 28.482 12.355 25.102 1 34.69 ? O3P FMN 301 B 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           20 
_model_server_stats.create_model_time_ms    18 
_model_server_stats.query_time_ms           278 
_model_server_stats.encode_time_ms          10 
_model_server_stats.element_count           31 
#