data_8CEQ
#
_model_server_result.job_id            bJPb158MVMRtkW7wZkcOmQ 
_model_server_result.datetime_utc      '2024-11-12 21:15:46' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ceq 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    8CEQ 
#
_exptl.entry_id    8CEQ 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              483.54 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-phenylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CEQ 
_cell.length_a            51.732 
_cell.length_b            83.904 
_cell.length_c            154.385 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CEQ 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C23 H25 N5 O5 S' 
_chem_comp.formula_weight    483.54 
_chem_comp.id                UF9 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-phenylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
OXT C UF9 doub 358 n n 
C O UF9 sing 359 n n 
C CA UF9 sing 360 n n 
CA N UF9 sing 361 n n 
CA CB UF9 sing 362 n n 
CB C34 UF9 sing 363 n n 
O29 C28 UF9 sing 364 n n 
C34 S33 UF9 sing 365 n n 
O27 C26 UF9 sing 366 n n 
C10 N11 UF9 doub 367 n y 
C10 N9 UF9 sing 368 n y 
N11 C12 UF9 sing 369 n y 
C28 C30 UF9 sing 370 n n 
C28 C26 UF9 sing 371 n n 
C30 O31 UF9 sing 372 n n 
C30 C32 UF9 sing 373 n n 
C26 C25 UF9 sing 374 n n 
N9 C8 UF9 doub 375 n y 
S33 C32 UF9 sing 376 n n 
C25 O31 UF9 sing 377 n n 
C25 N24 UF9 sing 378 n n 
C12 N24 UF9 sing 379 n y 
C12 C13 UF9 doub 380 n y 
N24 C23 UF9 sing 381 n y 
C8 C13 UF9 sing 382 n y 
C8 N7 UF9 sing 383 n n 
C13 C14 UF9 sing 384 n y 
C23 C14 UF9 doub 385 n y 
C14 C15 UF9 sing 386 n n 
C15 C16 UF9 trip 387 n n 
C16 C17 UF9 sing 388 n n 
C17 C22 UF9 doub 389 n y 
C17 C18 UF9 sing 390 n y 
C22 C21 UF9 sing 391 n y 
C18 C19 UF9 doub 392 n y 
C21 C20 UF9 doub 393 n y 
C19 C20 UF9 sing 394 n y 
N H1 UF9 sing 395 n n 
N H2 UF9 sing 396 n n 
CA H4 UF9 sing 397 n n 
O H5 UF9 sing 398 n n 
CB H6 UF9 sing 399 n n 
CB H7 UF9 sing 400 n n 
C10 H8 UF9 sing 401 n n 
C18 H9 UF9 sing 402 n n 
C19 H10 UF9 sing 403 n n 
C20 H11 UF9 sing 404 n n 
C21 H12 UF9 sing 405 n n 
C22 H13 UF9 sing 406 n n 
C23 H14 UF9 sing 407 n n 
C25 H15 UF9 sing 408 n n 
C26 H16 UF9 sing 409 n n 
C28 H17 UF9 sing 410 n n 
C30 H18 UF9 sing 411 n n 
C32 H19 UF9 sing 412 n n 
C32 H20 UF9 sing 413 n n 
C34 H21 UF9 sing 414 n n 
C34 H22 UF9 sing 415 n n 
N7 H23 UF9 sing 416 n n 
N7 H24 UF9 sing 417 n n 
O27 H25 UF9 sing 418 n n 
O29 H26 UF9 sing 419 n n 
#
_atom_sites.entry_id                     8CEQ 
_atom_sites.fract_transf_matrix[1][1]    0.01933 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011918 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006477 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UF9 A 1 401 401 UF9 427 . 
D 2 UF9 B 1 401 401 UF9 427 . 
E 3 HOH A 1 501 17 HOH HOH . 
E 3 HOH A 2 502 29 HOH HOH . 
E 3 HOH A 3 503 33 HOH HOH . 
E 3 HOH A 4 504 35 HOH HOH . 
E 3 HOH A 5 505 36 HOH HOH . 
E 3 HOH A 6 506 2 HOH HOH . 
E 3 HOH A 7 507 19 HOH HOH . 
E 3 HOH A 8 508 4 HOH HOH . 
E 3 HOH A 9 509 8 HOH HOH . 
E 3 HOH A 10 510 27 HOH HOH . 
E 3 HOH A 11 511 18 HOH HOH . 
E 3 HOH A 12 512 3 HOH HOH . 
E 3 HOH A 13 513 1 HOH HOH . 
E 3 HOH A 14 514 7 HOH HOH . 
E 3 HOH A 15 515 5 HOH HOH . 
E 3 HOH A 16 516 28 HOH HOH . 
E 3 HOH A 17 517 13 HOH HOH . 
E 3 HOH A 18 518 22 HOH HOH . 
E 3 HOH A 19 519 21 HOH HOH . 
E 3 HOH A 20 520 11 HOH HOH . 
E 3 HOH A 21 521 23 HOH HOH . 
E 3 HOH A 22 522 26 HOH HOH . 
E 3 HOH A 23 523 12 HOH HOH . 
E 3 HOH A 24 524 30 HOH HOH . 
E 3 HOH A 25 525 16 HOH HOH . 
E 3 HOH A 26 526 20 HOH HOH . 
E 3 HOH A 27 527 24 HOH HOH . 
F 3 HOH B 1 501 31 HOH HOH . 
F 3 HOH B 2 502 6 HOH HOH . 
F 3 HOH B 3 503 34 HOH HOH . 
F 3 HOH B 4 504 25 HOH HOH . 
F 3 HOH B 5 505 10 HOH HOH . 
F 3 HOH B 6 506 14 HOH HOH . 
F 3 HOH B 7 507 9 HOH HOH . 
F 3 HOH B 8 508 15 HOH HOH . 
F 3 HOH B 9 509 37 HOH HOH . 
F 3 HOH B 10 510 32 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C12 UF9 . . . D 2 18.645 29.149 63.912 1 49.06 ? C12 UF9 401 B 1 
HETATM 2 C C14 UF9 . . . D 2 18.457 28.029 65.89 1 62.77 ? C14 UF9 401 B 1 
HETATM 3 N N UF9 . . . D 2 16.112 38.54 64.34 1 41.15 ? N UF9 401 B 1 
HETATM 4 C CA UF9 . . . D 2 15.031 37.955 63.488 1 47.27 ? CA UF9 401 B 1 
HETATM 5 C C UF9 . . . D 2 14.213 39.084 62.845 1 53.67 ? C UF9 401 B 1 
HETATM 6 O O UF9 . . . D 2 12.967 38.979 62.864 1 52.13 ? O UF9 401 B 1 
HETATM 7 C CB UF9 . . . D 2 14.134 37.017 64.302 1 38.82 ? CB UF9 401 B 1 
HETATM 8 O OXT UF9 . . . D 2 14.858 40.042 62.345 1 46.79 -1 OXT UF9 401 B 1 
HETATM 9 C C10 UF9 . . . D 2 20.145 28.905 62.298 1 41.81 ? C10 UF9 401 B 1 
HETATM 10 C C13 UF9 . . . D 2 19.246 28.141 64.692 1 53.7 ? C13 UF9 401 B 1 
HETATM 11 C C15 UF9 . . . D 2 18.721 27.094 66.942 1 62.25 ? C15 UF9 401 B 1 
HETATM 12 C C16 UF9 . . . D 2 18.999 26.257 67.751 1 66.21 ? C16 UF9 401 B 1 
HETATM 13 C C17 UF9 . . . D 2 19.368 25.19 68.638 1 71.34 ? C17 UF9 401 B 1 
HETATM 14 C C18 UF9 . . . D 2 20.705 24.982 68.969 1 61.88 ? C18 UF9 401 B 1 
HETATM 15 C C19 UF9 . . . D 2 21.062 23.913 69.774 1 63.49 ? C19 UF9 401 B 1 
HETATM 16 C C20 UF9 . . . D 2 20.099 23.049 70.255 1 75.46 ? C20 UF9 401 B 1 
HETATM 17 C C21 UF9 . . . D 2 18.772 23.251 69.931 1 76.97 ? C21 UF9 401 B 1 
HETATM 18 C C22 UF9 . . . D 2 18.401 24.315 69.127 1 78.44 ? C22 UF9 401 B 1 
HETATM 19 C C23 UF9 . . . D 2 17.443 28.948 65.784 1 58.54 ? C23 UF9 401 B 1 
HETATM 20 C C25 UF9 . . . D 2 16.657 30.682 64.106 1 51.08 ? C25 UF9 401 B 1 
HETATM 21 C C26 UF9 . . . D 2 15.221 30.258 63.829 1 48.19 ? C26 UF9 401 B 1 
HETATM 22 C C28 UF9 . . . D 2 14.494 31.612 63.867 1 47.81 ? C28 UF9 401 B 1 
HETATM 23 C C30 UF9 . . . D 2 15.429 32.51 64.691 1 49.97 ? C30 UF9 401 B 1 
HETATM 24 C C32 UF9 . . . D 2 14.797 33.133 65.922 1 50.73 ? C32 UF9 401 B 1 
HETATM 25 C C34 UF9 . . . D 2 14.827 35.749 64.784 1 44.07 ? C34 UF9 401 B 1 
HETATM 26 C C8 UF9 . . . D 2 20.392 27.521 64.132 1 48.7 ? C8 UF9 401 B 1 
HETATM 27 N N11 UF9 . . . D 2 19.062 29.565 62.712 1 45.93 ? N11 UF9 401 B 1 
HETATM 28 N N24 UF9 . . . D 2 17.547 29.63 64.591 1 51 ? N24 UF9 401 B 1 
HETATM 29 N N7 UF9 . . . D 2 21.067 26.529 64.734 1 44.36 ? N7 UF9 401 B 1 
HETATM 30 N N9 UF9 . . . D 2 20.82 27.935 62.92 1 43.94 ? N9 UF9 401 B 1 
HETATM 31 O O27 UF9 . . . D 2 15.102 29.64 62.552 1 48.72 ? O27 UF9 401 B 1 
HETATM 32 O O29 UF9 . . . D 2 14.314 32.15 62.56 1 48.12 ? O29 UF9 401 B 1 
HETATM 33 O O31 UF9 . . . D 2 16.551 31.691 65.083 1 51.11 ? O31 UF9 401 B 1 
HETATM 34 S S33 UF9 . . . D 2 13.754 34.604 65.698 1 57.73 ? S33 UF9 401 B 1 
#
_model_server_stats.io_time_ms              11 
_model_server_stats.parse_time_ms           8 
_model_server_stats.create_model_time_ms    5 
_model_server_stats.query_time_ms           213 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           34 
#