data_8CER
#
_model_server_result.job_id            EY83xzf9AzSXDY71T6SgYw 
_model_server_result.datetime_utc      '2024-11-01 04:31:01' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cer 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":401}' 
#
_entry.id    8CER 
#
_exptl.entry_id    8CER 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              533.599 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-naphthalen-1-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CER 
_cell.length_a            51.857 
_cell.length_b            83.586 
_cell.length_c            154.403 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CER 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C27 H27 N5 O5 S' 
_chem_comp.formula_weight    533.599 
_chem_comp.id                UEM 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-naphthalen-1-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C UEM doub 358 n n 
OXT C UEM sing 359 n n 
C CA UEM sing 360 n n 
CA N UEM sing 361 n n 
CA CB UEM sing 362 n n 
CB C38 UEM sing 363 n n 
O33 C32 UEM sing 364 n n 
C38 S37 UEM sing 365 n n 
O31 C30 UEM sing 366 n n 
C10 N11 UEM doub 367 n y 
C10 N9 UEM sing 368 n y 
N11 C12 UEM sing 369 n y 
C32 C34 UEM sing 370 n n 
C32 C30 UEM sing 371 n n 
C34 O35 UEM sing 372 n n 
C34 C36 UEM sing 373 n n 
C30 C29 UEM sing 374 n n 
S37 C36 UEM sing 375 n n 
C29 O35 UEM sing 376 n n 
C29 N28 UEM sing 377 n n 
N9 C8 UEM doub 378 n y 
C12 N28 UEM sing 379 n y 
C12 C13 UEM doub 380 n y 
N28 C27 UEM sing 381 n y 
C8 C13 UEM sing 382 n y 
C8 N7 UEM sing 383 n n 
C13 C14 UEM sing 384 n y 
C27 C14 UEM doub 385 n y 
C14 C15 UEM sing 386 n n 
C15 C16 UEM trip 387 n n 
C16 C17 UEM sing 388 n n 
C23 C24 UEM doub 389 n y 
C23 C22 UEM sing 390 n y 
C24 C25 UEM sing 391 n y 
C17 C22 UEM doub 392 n y 
C17 C18 UEM sing 393 n y 
C22 C21 UEM sing 394 n y 
C18 C19 UEM doub 395 n y 
C25 C26 UEM doub 396 n y 
C21 C26 UEM sing 397 n y 
C21 C20 UEM doub 398 n y 
C19 C20 UEM sing 399 n y 
N H1 UEM sing 400 n n 
N H2 UEM sing 401 n n 
CA H4 UEM sing 402 n n 
CB H5 UEM sing 403 n n 
CB H6 UEM sing 404 n n 
OXT H7 UEM sing 405 n n 
C10 H8 UEM sing 406 n n 
C18 H9 UEM sing 407 n n 
C19 H10 UEM sing 408 n n 
C20 H11 UEM sing 409 n n 
C23 H12 UEM sing 410 n n 
C24 H13 UEM sing 411 n n 
C25 H14 UEM sing 412 n n 
C26 H15 UEM sing 413 n n 
C27 H16 UEM sing 414 n n 
C29 H17 UEM sing 415 n n 
C30 H18 UEM sing 416 n n 
C32 H19 UEM sing 417 n n 
C34 H20 UEM sing 418 n n 
C36 H21 UEM sing 419 n n 
C36 H22 UEM sing 420 n n 
C38 H23 UEM sing 421 n n 
C38 H24 UEM sing 422 n n 
N7 H25 UEM sing 423 n n 
N7 H26 UEM sing 424 n n 
O31 H27 UEM sing 425 n n 
O33 H28 UEM sing 426 n n 
#
_atom_sites.entry_id                     8CER 
_atom_sites.fract_transf_matrix[1][1]    0.019284 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011964 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006477 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UEM A 1 401 401 UEM 494 . 
D 2 UEM B 1 401 401 UEM 494 . 
E 3 HOH A 1 501 4 HOH HOH . 
E 3 HOH A 2 502 2 HOH HOH . 
E 3 HOH A 3 503 9 HOH HOH . 
E 3 HOH A 4 504 5 HOH HOH . 
E 3 HOH A 5 505 14 HOH HOH . 
E 3 HOH A 6 506 32 HOH HOH . 
E 3 HOH A 7 507 19 HOH HOH . 
E 3 HOH A 8 508 31 HOH HOH . 
E 3 HOH A 9 509 18 HOH HOH . 
E 3 HOH A 10 510 24 HOH HOH . 
E 3 HOH A 11 511 3 HOH HOH . 
E 3 HOH A 12 512 7 HOH HOH . 
E 3 HOH A 13 513 11 HOH HOH . 
E 3 HOH A 14 514 8 HOH HOH . 
E 3 HOH A 15 515 1 HOH HOH . 
E 3 HOH A 16 516 30 HOH HOH . 
E 3 HOH A 17 517 20 HOH HOH . 
E 3 HOH A 18 518 27 HOH HOH . 
E 3 HOH A 19 519 12 HOH HOH . 
E 3 HOH A 20 520 16 HOH HOH . 
E 3 HOH A 21 521 26 HOH HOH . 
E 3 HOH A 22 522 23 HOH HOH . 
E 3 HOH A 23 523 25 HOH HOH . 
E 3 HOH A 24 524 33 HOH HOH . 
E 3 HOH A 25 525 15 HOH HOH . 
E 3 HOH A 26 526 17 HOH HOH . 
E 3 HOH A 27 527 21 HOH HOH . 
F 3 HOH B 1 501 28 HOH HOH . 
F 3 HOH B 2 502 6 HOH HOH . 
F 3 HOH B 3 503 13 HOH HOH . 
F 3 HOH B 4 504 22 HOH HOH . 
F 3 HOH B 5 505 10 HOH HOH . 
F 3 HOH B 6 506 29 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C15 UEM . . . D 2 18.976 27.011 66.599 1 50.9 ? C15 UEM 401 B 1 
HETATM 2 C C17 UEM . . . D 2 19.581 25.041 68.23 1 54.77 ? C17 UEM 401 B 1 
HETATM 3 N N UEM . . . D 2 16.638 38.255 64.361 1 41.23 ? N UEM 401 B 1 
HETATM 4 C CA UEM . . . D 2 15.538 37.806 63.465 1 36.47 ? CA UEM 401 B 1 
HETATM 5 C C UEM . . . D 2 14.869 39.029 62.825 1 48.1 ? C UEM 401 B 1 
HETATM 6 O O UEM . . . D 2 15.547 40.074 62.731 1 48.72 ? O UEM 401 B 1 
HETATM 7 C CB UEM . . . D 2 14.528 36.958 64.242 1 41.06 ? CB UEM 401 B 1 
HETATM 8 O OXT UEM . . . D 2 13.686 38.886 62.43 1 45.05 -1 OXT UEM 401 B 1 
HETATM 9 C C10 UEM . . . D 2 20.541 29.174 62.142 1 39.79 ? C10 UEM 401 B 1 
HETATM 10 C C12 UEM . . . D 2 18.948 29.231 63.683 1 44.58 ? C12 UEM 401 B 1 
HETATM 11 C C13 UEM . . . D 2 19.57 28.218 64.438 1 46.13 ? C13 UEM 401 B 1 
HETATM 12 C C14 UEM . . . D 2 18.728 27.991 65.582 1 48.08 ? C14 UEM 401 B 1 
HETATM 13 C C16 UEM . . . D 2 19.232 26.146 67.383 1 55.49 ? C16 UEM 401 B 1 
HETATM 14 C C18 UEM . . . D 2 20.835 24.479 68.15 1 53.62 ? C18 UEM 401 B 1 
HETATM 15 C C19 UEM . . . D 2 21.184 23.402 68.95 1 51.01 ? C19 UEM 401 B 1 
HETATM 16 C C20 UEM . . . D 2 20.292 22.868 69.837 1 51.71 ? C20 UEM 401 B 1 
HETATM 17 C C21 UEM . . . D 2 18.986 23.405 69.962 1 57.49 ? C21 UEM 401 B 1 
HETATM 18 C C22 UEM . . . D 2 18.616 24.511 69.147 1 58.47 ? C22 UEM 401 B 1 
HETATM 19 C C23 UEM . . . D 2 17.309 25.04 69.282 1 49.97 ? C23 UEM 401 B 1 
HETATM 20 C C24 UEM . . . D 2 16.422 24.501 70.171 1 48.34 ? C24 UEM 401 B 1 
HETATM 21 C C25 UEM . . . D 2 16.785 23.423 70.963 1 54.94 ? C25 UEM 401 B 1 
HETATM 22 C C26 UEM . . . D 2 18.035 22.879 70.868 1 58.52 ? C26 UEM 401 B 1 
HETATM 23 C C27 UEM . . . D 2 17.669 28.854 65.472 1 47.31 ? C27 UEM 401 B 1 
HETATM 24 C C29 UEM . . . D 2 16.87 30.639 63.858 1 42.74 ? C29 UEM 401 B 1 
HETATM 25 C C30 UEM . . . D 2 15.458 30.153 63.562 1 43.55 ? C30 UEM 401 B 1 
HETATM 26 C C32 UEM . . . D 2 14.667 31.469 63.625 1 48.23 ? C32 UEM 401 B 1 
HETATM 27 C C34 UEM . . . D 2 15.53 32.374 64.516 1 50.87 ? C34 UEM 401 B 1 
HETATM 28 C C36 UEM . . . D 2 14.902 33.008 65.742 1 51.83 ? C36 UEM 401 B 1 
HETATM 29 C C38 UEM . . . D 2 15.005 35.536 64.501 1 44.19 ? C38 UEM 401 B 1 
HETATM 30 C C8 UEM . . . D 2 20.784 27.708 63.91 1 44.21 ? C8 UEM 401 B 1 
HETATM 31 N N11 UEM . . . D 2 19.396 29.739 62.53 1 41.17 ? N11 UEM 401 B 1 
HETATM 32 N N28 UEM . . . D 2 17.791 29.61 64.328 1 49.38 ? N28 UEM 401 B 1 
HETATM 33 N N7 UEM . . . D 2 21.503 26.753 64.508 1 45.95 ? N7 UEM 401 B 1 
HETATM 34 N N9 UEM . . . D 2 21.244 28.213 62.745 1 42.35 ? N9 UEM 401 B 1 
HETATM 35 O O31 UEM . . . D 2 15.385 29.559 62.27 1 43.58 ? O31 UEM 401 B 1 
HETATM 36 O O33 UEM . . . D 2 14.494 32.049 62.337 1 42.34 ? O33 UEM 401 B 1 
HETATM 37 O O35 UEM . . . D 2 16.71 31.615 64.864 1 49.21 ? O35 UEM 401 B 1 
HETATM 38 S S37 UEM . . . D 2 13.949 34.543 65.59 1 48.82 ? S37 UEM 401 B 1 
#
_model_server_stats.io_time_ms              8 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           245 
_model_server_stats.encode_time_ms          6 
_model_server_stats.element_count           38 
#