data_8CET
#
_model_server_result.job_id            gKP21ddHOTjExCNuMBOIuA 
_model_server_result.datetime_utc      '2024-10-10 10:28:17' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cet 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":401}' 
#
_entry.id    8CET 
#
_exptl.entry_id    8CET 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              534.587 
_entity.id                          2 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            '(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-quinolin-3-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' 
_entity.pdbx_number_of_molecules    2 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CET 
_cell.length_a            51.936 
_cell.length_b            84.133 
_cell.length_c            154.25 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CET 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
loop_
_pdbx_struct_assembly.method_details
_pdbx_struct_assembly.oligomeric_details
_pdbx_struct_assembly.oligomeric_count
_pdbx_struct_assembly.details
_pdbx_struct_assembly.id
? monomeric 1 author_defined_assembly 1 
? monomeric 1 author_defined_assembly 2 
#
loop_
_pdbx_struct_assembly_gen.asym_id_list
_pdbx_struct_assembly_gen.assembly_id
_pdbx_struct_assembly_gen.oper_expression
A,C,E 1 1 
B,D,F 2 1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 2 C N N 
? 2 D N N 
#
_chem_comp.formula           'C26 H26 N6 O5 S' 
_chem_comp.formula_weight    534.587 
_chem_comp.id                UGR 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              '(2~{S})-2-azanyl-4-[[(2~{S},3~{S},4~{R},5~{R})-5-[4-azanyl-5-(2-quinolin-3-ylethynyl)pyrrolo[2,3-d]pyrimidin-7-yl]-3,4-bis(oxidanyl)oxolan-2-yl]methylsulfanyl]butanoic acid' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O C UGR doub 358 n n 
OXT C UGR sing 359 n n 
C CA UGR sing 360 n n 
CA N UGR sing 361 n n 
CA CB UGR sing 362 n n 
CB C38 UGR sing 363 n n 
O33 C32 UGR sing 364 n n 
C38 S37 UGR sing 365 n n 
O31 C30 UGR sing 366 n n 
C10 N11 UGR doub 367 n y 
C10 N9 UGR sing 368 n y 
N11 C12 UGR sing 369 n y 
C32 C34 UGR sing 370 n n 
C32 C30 UGR sing 371 n n 
S37 C36 UGR sing 372 n n 
C34 O35 UGR sing 373 n n 
C34 C36 UGR sing 374 n n 
C30 C29 UGR sing 375 n n 
C29 O35 UGR sing 376 n n 
C29 N28 UGR sing 377 n n 
N9 C8 UGR doub 378 n y 
C12 N28 UGR sing 379 n y 
C12 C13 UGR doub 380 n y 
N28 C27 UGR sing 381 n y 
C8 C13 UGR sing 382 n y 
C8 N7 UGR sing 383 n n 
C13 C14 UGR sing 384 n y 
C27 C14 UGR doub 385 n y 
C14 C15 UGR sing 386 n n 
C15 C16 UGR trip 387 n n 
C16 C17 UGR sing 388 n n 
C17 C22 UGR doub 389 n y 
C17 C18 UGR sing 390 n y 
C22 C21 UGR sing 391 n y 
C18 N19 UGR doub 392 n y 
C21 C23 UGR doub 393 n y 
C21 C20 UGR sing 394 n y 
C23 C24 UGR sing 395 n y 
N19 C20 UGR sing 396 n y 
C20 C26 UGR doub 397 n y 
C24 C25 UGR doub 398 n y 
C26 C25 UGR sing 399 n y 
N H1 UGR sing 400 n n 
N H2 UGR sing 401 n n 
CA H4 UGR sing 402 n n 
CB H5 UGR sing 403 n n 
CB H6 UGR sing 404 n n 
OXT H7 UGR sing 405 n n 
C10 H8 UGR sing 406 n n 
C18 H9 UGR sing 407 n n 
C22 H10 UGR sing 408 n n 
C23 H11 UGR sing 409 n n 
C24 H12 UGR sing 410 n n 
C25 H13 UGR sing 411 n n 
C26 H14 UGR sing 412 n n 
C27 H15 UGR sing 413 n n 
C29 H16 UGR sing 414 n n 
C30 H17 UGR sing 415 n n 
C32 H18 UGR sing 416 n n 
C34 H19 UGR sing 417 n n 
C36 H20 UGR sing 418 n n 
C36 H21 UGR sing 419 n n 
C38 H22 UGR sing 420 n n 
C38 H23 UGR sing 421 n n 
N7 H24 UGR sing 422 n n 
N7 H25 UGR sing 423 n n 
O31 H26 UGR sing 424 n n 
O33 H27 UGR sing 425 n n 
#
_atom_sites.entry_id                     8CET 
_atom_sites.fract_transf_matrix[1][1]    0.019254 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.011886 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.006483 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 UGR A 1 401 401 UGR 507 . 
D 2 UGR B 1 401 401 UGR 507 . 
E 3 HOH A 1 501 39 HOH HOH . 
E 3 HOH A 2 502 4 HOH HOH . 
E 3 HOH A 3 503 44 HOH HOH . 
E 3 HOH A 4 504 9 HOH HOH . 
E 3 HOH A 5 505 7 HOH HOH . 
E 3 HOH A 6 506 1 HOH HOH . 
E 3 HOH A 7 507 2 HOH HOH . 
E 3 HOH A 8 508 21 HOH HOH . 
E 3 HOH A 9 509 43 HOH HOH . 
E 3 HOH A 10 510 5 HOH HOH . 
E 3 HOH A 11 511 20 HOH HOH . 
E 3 HOH A 12 512 28 HOH HOH . 
E 3 HOH A 13 513 30 HOH HOH . 
E 3 HOH A 14 514 18 HOH HOH . 
E 3 HOH A 15 515 13 HOH HOH . 
E 3 HOH A 16 516 3 HOH HOH . 
E 3 HOH A 17 517 8 HOH HOH . 
E 3 HOH A 18 518 19 HOH HOH . 
E 3 HOH A 19 519 40 HOH HOH . 
E 3 HOH A 20 520 12 HOH HOH . 
E 3 HOH A 21 521 45 HOH HOH . 
E 3 HOH A 22 522 37 HOH HOH . 
E 3 HOH A 23 523 25 HOH HOH . 
E 3 HOH A 24 524 23 HOH HOH . 
E 3 HOH A 25 525 32 HOH HOH . 
E 3 HOH A 26 526 38 HOH HOH . 
E 3 HOH A 27 527 15 HOH HOH . 
E 3 HOH A 28 528 29 HOH HOH . 
E 3 HOH A 29 529 27 HOH HOH . 
E 3 HOH A 30 530 34 HOH HOH . 
E 3 HOH A 31 531 36 HOH HOH . 
E 3 HOH A 32 532 14 HOH HOH . 
E 3 HOH A 33 533 31 HOH HOH . 
E 3 HOH A 34 534 22 HOH HOH . 
E 3 HOH A 35 535 26 HOH HOH . 
E 3 HOH A 36 536 33 HOH HOH . 
F 3 HOH B 1 501 35 HOH HOH . 
F 3 HOH B 2 502 41 HOH HOH . 
F 3 HOH B 3 503 6 HOH HOH . 
F 3 HOH B 4 504 17 HOH HOH . 
F 3 HOH B 5 505 11 HOH HOH . 
F 3 HOH B 6 506 10 HOH HOH . 
F 3 HOH B 7 507 24 HOH HOH . 
F 3 HOH B 8 508 16 HOH HOH . 
F 3 HOH B 9 509 42 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N UGR . . . C 2 18.62 13.24 41.831 1 31.71 ? N UGR 401 A 1 
HETATM 2 C CA UGR . . . C 2 19.921 13.207 41.079 1 29.43 ? CA UGR 401 A 1 
HETATM 3 C C UGR . . . C 2 19.932 12.171 39.945 1 32.58 ? C UGR 401 A 1 
HETATM 4 O O UGR . . . C 2 18.973 12.157 39.151 1 32.67 ? O UGR 401 A 1 
HETATM 5 C CB UGR . . . C 2 21.085 12.912 42.028 1 30.45 ? CB UGR 401 A 1 
HETATM 6 O OXT UGR . . . C 2 20.996 11.505 39.823 1 29.96 -1 OXT UGR 401 A 1 
HETATM 7 C C10 UGR . . . C 2 21.453 22.554 43.808 1 32.22 ? C10 UGR 401 A 1 
HETATM 8 C C12 UGR . . . C 2 22.588 21.082 45.012 1 30.41 ? C12 UGR 401 A 1 
HETATM 9 C C13 UGR . . . C 2 22.754 21.996 46.071 1 33.56 ? C13 UGR 401 A 1 
HETATM 10 C C14 UGR . . . C 2 23.528 21.318 47.072 1 32.91 ? C14 UGR 401 A 1 
HETATM 11 C C15 UGR . . . C 2 24.021 21.913 48.276 1 36.16 ? C15 UGR 401 A 1 
HETATM 12 C C16 UGR . . . C 2 24.475 22.486 49.217 1 39.9 ? C16 UGR 401 A 1 
HETATM 13 C C17 UGR . . . C 2 25.092 23.217 50.283 1 44.31 ? C17 UGR 401 A 1 
HETATM 14 C C18 UGR . . . C 2 26.07 22.627 51.088 1 41.71 ? C18 UGR 401 A 1 
HETATM 15 C C20 UGR . . . C 2 26.369 24.55 52.319 1 45.27 ? C20 UGR 401 A 1 
HETATM 16 C C21 UGR . . . C 2 25.394 25.234 51.564 1 40.34 ? C21 UGR 401 A 1 
HETATM 17 C C22 UGR . . . C 2 24.758 24.527 50.531 1 44.29 ? C22 UGR 401 A 1 
HETATM 18 C C23 UGR . . . C 2 25.114 26.58 51.878 1 38.03 ? C23 UGR 401 A 1 
HETATM 19 C C24 UGR . . . C 2 25.774 27.209 52.893 1 42.83 ? C24 UGR 401 A 1 
HETATM 20 C C25 UGR . . . C 2 26.732 26.536 53.635 1 47.08 ? C25 UGR 401 A 1 
HETATM 21 C C26 UGR . . . C 2 27.032 25.232 53.362 1 44.48 ? C26 UGR 401 A 1 
HETATM 22 C C27 UGR . . . C 2 23.784 20.06 46.592 1 31.14 ? C27 UGR 401 A 1 
HETATM 23 C C29 UGR . . . C 2 23.327 18.733 44.493 1 32.53 ? C29 UGR 401 A 1 
HETATM 24 C C30 UGR . . . C 2 24.698 18.066 44.451 1 27.92 ? C30 UGR 401 A 1 
HETATM 25 C C32 UGR . . . C 2 24.328 16.671 43.924 1 27.58 ? C32 UGR 401 A 1 
HETATM 26 C C34 UGR . . . C 2 22.851 16.505 44.324 1 30.32 ? C34 UGR 401 A 1 
HETATM 27 C C36 UGR . . . C 2 22.63 15.272 45.183 1 28.87 ? C36 UGR 401 A 1 
HETATM 28 C C38 UGR . . . C 2 21.351 14.038 43.011 1 34.64 ? C38 UGR 401 A 1 
HETATM 29 C C8 UGR . . . C 2 22.174 23.279 45.877 1 31.63 ? C8 UGR 401 A 1 
HETATM 30 N N11 UGR . . . C 2 21.949 21.316 43.864 1 30.65 ? N11 UGR 401 A 1 
HETATM 31 N N19 UGR . . . C 2 26.697 23.242 52.07 1 42.92 ? N19 UGR 401 A 1 
HETATM 32 N N28 UGR . . . C 2 23.225 19.908 45.348 1 32.28 ? N28 UGR 401 A 1 
HETATM 33 N N7 UGR . . . C 2 22.216 24.269 46.787 1 32.07 ? N7 UGR 401 A 1 
HETATM 34 N N9 UGR . . . C 2 21.531 23.525 44.718 1 31.24 ? N9 UGR 401 A 1 
HETATM 35 O O31 UGR . . . C 2 25.6 18.72 43.562 1 28.47 ? O31 UGR 401 A 1 
HETATM 36 O O33 UGR . . . C 2 24.502 16.6 42.511 1 28.99 ? O33 UGR 401 A 1 
HETATM 37 O O35 UGR . . . C 2 22.456 17.732 44.974 1 32.62 ? O35 UGR 401 A 1 
HETATM 38 S S37 UGR . . . C 2 22.714 13.766 44.172 1 36.53 ? S37 UGR 401 A 1 
#
_model_server_stats.io_time_ms              13 
_model_server_stats.parse_time_ms           10 
_model_server_stats.create_model_time_ms    4 
_model_server_stats.query_time_ms           285 
_model_server_stats.encode_time_ms          1 
_model_server_stats.element_count           38 
#