data_8CEY # _model_server_result.job_id MluoKW4mzEqDUn_ExIoNBw _model_server_result.datetime_utc '2025-07-07 06:37:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cey # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":402}' # _entry.id 8CEY # _exptl.entry_id 8CEY _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 58.693 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'NICKEL (II) ION' _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CEY _cell.length_a 81.632 _cell.length_b 81.763 _cell.length_c 170.486 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CEY _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 ? monomeric 1 author_defined_assembly 3 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,D,E,H 1 1 B,F,I 2 1 C,G,J 3 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 269 A HIS 276 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.197 ? metalc ? metalc2 A NE2 HIS 275 A HIS 282 1_555 E NI NI . A NI 402 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.149 ? metalc ? metalc3 E NI NI . A NI 402 1_555 B NE2 HIS 269 B HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.154 ? metalc ? metalc4 E NI NI . A NI 402 1_555 B NE2 HIS 275 B HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.015 ? metalc ? metalc5 E NI NI . A NI 402 1_555 C NE2 HIS 269 C HIS 276 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.262 ? metalc ? metalc6 E NI NI . A NI 402 1_555 C NE2 HIS 275 C HIS 282 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.063 ? # _chem_comp.formula 'Ni 2' _chem_comp.formula_weight 58.693 _chem_comp.id NI _chem_comp.mon_nstd_flag . _chem_comp.name 'NICKEL (II) ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8CEY _atom_sites.fract_transf_matrix[1][1] 0.01225 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01223 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.005866 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 UEF A 1 401 401 UEF LIG . E 3 NI A 1 402 1 NI NI . F 2 UEF B 1 401 401 UEF LIG . G 2 UEF C 1 401 401 UEF LIG . H 4 HOH A 1 501 156 HOH HOH . H 4 HOH A 2 502 219 HOH HOH . H 4 HOH A 3 503 59 HOH HOH . H 4 HOH A 4 504 124 HOH HOH . H 4 HOH A 5 505 47 HOH HOH . H 4 HOH A 6 506 29 HOH HOH . H 4 HOH A 7 507 107 HOH HOH . H 4 HOH A 8 508 72 HOH HOH . H 4 HOH A 9 509 112 HOH HOH . H 4 HOH A 10 510 87 HOH HOH . H 4 HOH A 11 511 123 HOH HOH . H 4 HOH A 12 512 74 HOH HOH . H 4 HOH A 13 513 55 HOH HOH . H 4 HOH A 14 514 106 HOH HOH . H 4 HOH A 15 515 52 HOH HOH . H 4 HOH A 16 516 62 HOH HOH . H 4 HOH A 17 517 70 HOH HOH . H 4 HOH A 18 518 77 HOH HOH . H 4 HOH A 19 519 220 HOH HOH . H 4 HOH A 20 520 45 HOH HOH . H 4 HOH A 21 521 50 HOH HOH . H 4 HOH A 22 522 131 HOH HOH . H 4 HOH A 23 523 125 HOH HOH . H 4 HOH A 24 524 86 HOH HOH . H 4 HOH A 25 525 90 HOH HOH . H 4 HOH A 26 526 182 HOH HOH . H 4 HOH A 27 527 178 HOH HOH . H 4 HOH A 28 528 39 HOH HOH . H 4 HOH A 29 529 15 HOH HOH . H 4 HOH A 30 530 100 HOH HOH . H 4 HOH A 31 531 65 HOH HOH . H 4 HOH A 32 532 41 HOH HOH . H 4 HOH A 33 533 9 HOH HOH . H 4 HOH A 34 534 102 HOH HOH . H 4 HOH A 35 535 21 HOH HOH . H 4 HOH A 36 536 14 HOH HOH . H 4 HOH A 37 537 168 HOH HOH . H 4 HOH A 38 538 117 HOH HOH . H 4 HOH A 39 539 151 HOH HOH . H 4 HOH A 40 540 16 HOH HOH . H 4 HOH A 41 541 73 HOH HOH . H 4 HOH A 42 542 116 HOH HOH . H 4 HOH A 43 543 42 HOH HOH . H 4 HOH A 44 544 215 HOH HOH . H 4 HOH A 45 545 69 HOH HOH . H 4 HOH A 46 546 115 HOH HOH . H 4 HOH A 47 547 138 HOH HOH . H 4 HOH A 48 548 132 HOH HOH . H 4 HOH A 49 549 44 HOH HOH . H 4 HOH A 50 550 40 HOH HOH . H 4 HOH A 51 551 36 HOH HOH . H 4 HOH A 52 552 3 HOH HOH . H 4 HOH A 53 553 176 HOH HOH . H 4 HOH A 54 554 172 HOH HOH . H 4 HOH A 55 555 33 HOH HOH . H 4 HOH A 56 556 10 HOH HOH . H 4 HOH A 57 557 27 HOH HOH . H 4 HOH A 58 558 126 HOH HOH . H 4 HOH A 59 559 63 HOH HOH . H 4 HOH A 60 560 205 HOH HOH . H 4 HOH A 61 561 122 HOH HOH . H 4 HOH A 62 562 175 HOH HOH . H 4 HOH A 63 563 135 HOH HOH . H 4 HOH A 64 564 153 HOH HOH . H 4 HOH A 65 565 119 HOH HOH . H 4 HOH A 66 566 91 HOH HOH . H 4 HOH A 67 567 196 HOH HOH . H 4 HOH A 68 568 60 HOH HOH . H 4 HOH A 69 569 96 HOH HOH . H 4 HOH A 70 570 183 HOH HOH . H 4 HOH A 71 571 118 HOH HOH . H 4 HOH A 72 572 82 HOH HOH . H 4 HOH A 73 573 17 HOH HOH . H 4 HOH A 74 574 83 HOH HOH . H 4 HOH A 75 575 46 HOH HOH . H 4 HOH A 76 576 204 HOH HOH . H 4 HOH A 77 577 51 HOH HOH . H 4 HOH A 78 578 152 HOH HOH . H 4 HOH A 79 579 48 HOH HOH . H 4 HOH A 80 580 30 HOH HOH . H 4 HOH A 81 581 141 HOH HOH . H 4 HOH A 82 582 8 HOH HOH . H 4 HOH A 83 583 188 HOH HOH . H 4 HOH A 84 584 199 HOH HOH . H 4 HOH A 85 585 130 HOH HOH . H 4 HOH A 86 586 31 HOH HOH . H 4 HOH A 87 587 162 HOH HOH . H 4 HOH A 88 588 158 HOH HOH . H 4 HOH A 89 589 75 HOH HOH . H 4 HOH A 90 590 81 HOH HOH . H 4 HOH A 91 591 5 HOH HOH . H 4 HOH A 92 592 181 HOH HOH . H 4 HOH A 93 593 23 HOH HOH . H 4 HOH A 94 594 143 HOH HOH . H 4 HOH A 95 595 146 HOH HOH . H 4 HOH A 96 596 104 HOH HOH . H 4 HOH A 97 597 108 HOH HOH . H 4 HOH A 98 598 11 HOH HOH . H 4 HOH A 99 599 105 HOH HOH . H 4 HOH A 100 600 12 HOH HOH . H 4 HOH A 101 601 177 HOH HOH . H 4 HOH A 102 602 6 HOH HOH . H 4 HOH A 103 603 150 HOH HOH . H 4 HOH A 104 604 1 HOH HOH . H 4 HOH A 105 605 54 HOH HOH . H 4 HOH A 106 606 13 HOH HOH . H 4 HOH A 107 607 25 HOH HOH . H 4 HOH A 108 608 139 HOH HOH . H 4 HOH A 109 609 99 HOH HOH . H 4 HOH A 110 610 211 HOH HOH . H 4 HOH A 111 611 137 HOH HOH . H 4 HOH A 112 612 166 HOH HOH . H 4 HOH A 113 613 197 HOH HOH . H 4 HOH A 114 614 209 HOH HOH . H 4 HOH A 115 615 133 HOH HOH . H 4 HOH A 116 616 210 HOH HOH . I 4 HOH B 1 501 148 HOH HOH . I 4 HOH B 2 502 28 HOH HOH . I 4 HOH B 3 503 202 HOH HOH . I 4 HOH B 4 504 216 HOH HOH . I 4 HOH B 5 505 92 HOH HOH . I 4 HOH B 6 506 61 HOH HOH . I 4 HOH B 7 507 194 HOH HOH . I 4 HOH B 8 508 218 HOH HOH . I 4 HOH B 9 509 127 HOH HOH . I 4 HOH B 10 510 184 HOH HOH . I 4 HOH B 11 511 64 HOH HOH . I 4 HOH B 12 512 217 HOH HOH . I 4 HOH B 13 513 85 HOH HOH . I 4 HOH B 14 514 110 HOH HOH . I 4 HOH B 15 515 111 HOH HOH . I 4 HOH B 16 516 53 HOH HOH . I 4 HOH B 17 517 129 HOH HOH . I 4 HOH B 18 518 58 HOH HOH . I 4 HOH B 19 519 35 HOH HOH . I 4 HOH B 20 520 113 HOH HOH . I 4 HOH B 21 521 101 HOH HOH . I 4 HOH B 22 522 161 HOH HOH . I 4 HOH B 23 523 103 HOH HOH . I 4 HOH B 24 524 22 HOH HOH . I 4 HOH B 25 525 190 HOH HOH . I 4 HOH B 26 526 114 HOH HOH . I 4 HOH B 27 527 171 HOH HOH . I 4 HOH B 28 528 56 HOH HOH . I 4 HOH B 29 529 167 HOH HOH . I 4 HOH B 30 530 203 HOH HOH . I 4 HOH B 31 531 68 HOH HOH . I 4 HOH B 32 532 198 HOH HOH . I 4 HOH B 33 533 80 HOH HOH . I 4 HOH B 34 534 4 HOH HOH . I 4 HOH B 35 535 95 HOH HOH . I 4 HOH B 36 536 179 HOH HOH . I 4 HOH B 37 537 208 HOH HOH . J 4 HOH C 1 501 180 HOH HOH . J 4 HOH C 2 502 67 HOH HOH . J 4 HOH C 3 503 32 HOH HOH . J 4 HOH C 4 504 98 HOH HOH . J 4 HOH C 5 505 142 HOH HOH . J 4 HOH C 6 506 66 HOH HOH . J 4 HOH C 7 507 193 HOH HOH . J 4 HOH C 8 508 97 HOH HOH . J 4 HOH C 9 509 93 HOH HOH . J 4 HOH C 10 510 174 HOH HOH . J 4 HOH C 11 511 200 HOH HOH . J 4 HOH C 12 512 207 HOH HOH . J 4 HOH C 13 513 24 HOH HOH . J 4 HOH C 14 514 76 HOH HOH . J 4 HOH C 15 515 155 HOH HOH . J 4 HOH C 16 516 89 HOH HOH . J 4 HOH C 17 517 94 HOH HOH . J 4 HOH C 18 518 37 HOH HOH . J 4 HOH C 19 519 165 HOH HOH . J 4 HOH C 20 520 154 HOH HOH . J 4 HOH C 21 521 78 HOH HOH . J 4 HOH C 22 522 38 HOH HOH . J 4 HOH C 23 523 134 HOH HOH . J 4 HOH C 24 524 43 HOH HOH . J 4 HOH C 25 525 79 HOH HOH . J 4 HOH C 26 526 145 HOH HOH . J 4 HOH C 27 527 140 HOH HOH . J 4 HOH C 28 528 164 HOH HOH . J 4 HOH C 29 529 149 HOH HOH . J 4 HOH C 30 530 49 HOH HOH . J 4 HOH C 31 531 185 HOH HOH . J 4 HOH C 32 532 121 HOH HOH . J 4 HOH C 33 533 7 HOH HOH . J 4 HOH C 34 534 189 HOH HOH . J 4 HOH C 35 535 163 HOH HOH . J 4 HOH C 36 536 212 HOH HOH . J 4 HOH C 37 537 84 HOH HOH . J 4 HOH C 38 538 120 HOH HOH . J 4 HOH C 39 539 88 HOH HOH . J 4 HOH C 40 540 57 HOH HOH . J 4 HOH C 41 541 187 HOH HOH . J 4 HOH C 42 542 191 HOH HOH . J 4 HOH C 43 543 26 HOH HOH . J 4 HOH C 44 544 19 HOH HOH . J 4 HOH C 45 545 136 HOH HOH . J 4 HOH C 46 546 71 HOH HOH . J 4 HOH C 47 547 34 HOH HOH . J 4 HOH C 48 548 169 HOH HOH . J 4 HOH C 49 549 173 HOH HOH . J 4 HOH C 50 550 157 HOH HOH . J 4 HOH C 51 551 159 HOH HOH . J 4 HOH C 52 552 144 HOH HOH . J 4 HOH C 53 553 147 HOH HOH . J 4 HOH C 54 554 109 HOH HOH . J 4 HOH C 55 555 18 HOH HOH . J 4 HOH C 56 556 201 HOH HOH . J 4 HOH C 57 557 170 HOH HOH . J 4 HOH C 58 558 192 HOH HOH . J 4 HOH C 59 559 186 HOH HOH . J 4 HOH C 60 560 160 HOH HOH . J 4 HOH C 61 561 213 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NI _atom_site.label_atom_id NI _atom_site.label_comp_id NI _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 3 _atom_site.Cartn_x -1.241 _atom_site.Cartn_y -4.391 _atom_site.Cartn_z 13.274 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 39.84 _atom_site.pdbx_formal_charge 0 _atom_site.auth_atom_id NI _atom_site.auth_comp_id NI _atom_site.auth_seq_id 402 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 51 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 8 _model_server_stats.query_time_ms 324 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 1 #