data_8CF9 # _model_server_result.job_id QYECFhqiAyy_IsPurXzENQ _model_server_result.datetime_utc '2024-10-10 10:27:30' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cf9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":502}' # _entry.id 8CF9 # _exptl.entry_id 8CF9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CF9 _cell.length_a 91.828 _cell.length_b 91.828 _cell.length_c 85.891 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CF9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall 'P 4nw 2abw' _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 7_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 85.891 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8CF9 _atom_sites.fract_transf_matrix[1][1] 0.01089 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01089 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011643 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UK6 A 1 501 1 UK6 SCL . C 3 GOL A 1 502 1 GOL GOL . D 4 HOH A 1 601 12 HOH HOH . D 4 HOH A 2 602 138 HOH HOH . D 4 HOH A 3 603 42 HOH HOH . D 4 HOH A 4 604 57 HOH HOH . D 4 HOH A 5 605 115 HOH HOH . D 4 HOH A 6 606 24 HOH HOH . D 4 HOH A 7 607 147 HOH HOH . D 4 HOH A 8 608 110 HOH HOH . D 4 HOH A 9 609 70 HOH HOH . D 4 HOH A 10 610 54 HOH HOH . D 4 HOH A 11 611 29 HOH HOH . D 4 HOH A 12 612 11 HOH HOH . D 4 HOH A 13 613 23 HOH HOH . D 4 HOH A 14 614 118 HOH HOH . D 4 HOH A 15 615 10 HOH HOH . D 4 HOH A 16 616 34 HOH HOH . D 4 HOH A 17 617 100 HOH HOH . D 4 HOH A 18 618 2 HOH HOH . D 4 HOH A 19 619 63 HOH HOH . D 4 HOH A 20 620 62 HOH HOH . D 4 HOH A 21 621 6 HOH HOH . D 4 HOH A 22 622 7 HOH HOH . D 4 HOH A 23 623 133 HOH HOH . D 4 HOH A 24 624 14 HOH HOH . D 4 HOH A 25 625 48 HOH HOH . D 4 HOH A 26 626 3 HOH HOH . D 4 HOH A 27 627 76 HOH HOH . D 4 HOH A 28 628 26 HOH HOH . D 4 HOH A 29 629 80 HOH HOH . D 4 HOH A 30 630 25 HOH HOH . D 4 HOH A 31 631 9 HOH HOH . D 4 HOH A 32 632 65 HOH HOH . D 4 HOH A 33 633 84 HOH HOH . D 4 HOH A 34 634 40 HOH HOH . D 4 HOH A 35 635 120 HOH HOH . D 4 HOH A 36 636 50 HOH HOH . D 4 HOH A 37 637 78 HOH HOH . D 4 HOH A 38 638 49 HOH HOH . D 4 HOH A 39 639 1 HOH HOH . D 4 HOH A 40 640 95 HOH HOH . D 4 HOH A 41 641 134 HOH HOH . D 4 HOH A 42 642 21 HOH HOH . D 4 HOH A 43 643 96 HOH HOH . D 4 HOH A 44 644 101 HOH HOH . D 4 HOH A 45 645 55 HOH HOH . D 4 HOH A 46 646 36 HOH HOH . D 4 HOH A 47 647 46 HOH HOH . D 4 HOH A 48 648 43 HOH HOH . D 4 HOH A 49 649 60 HOH HOH . D 4 HOH A 50 650 119 HOH HOH . D 4 HOH A 51 651 87 HOH HOH . D 4 HOH A 52 652 45 HOH HOH . D 4 HOH A 53 653 20 HOH HOH . D 4 HOH A 54 654 130 HOH HOH . D 4 HOH A 55 655 13 HOH HOH . D 4 HOH A 56 656 107 HOH HOH . D 4 HOH A 57 657 47 HOH HOH . D 4 HOH A 58 658 94 HOH HOH . D 4 HOH A 59 659 109 HOH HOH . D 4 HOH A 60 660 111 HOH HOH . D 4 HOH A 61 661 67 HOH HOH . D 4 HOH A 62 662 53 HOH HOH . D 4 HOH A 63 663 104 HOH HOH . D 4 HOH A 64 664 146 HOH HOH . D 4 HOH A 65 665 28 HOH HOH . D 4 HOH A 66 666 81 HOH HOH . D 4 HOH A 67 667 90 HOH HOH . D 4 HOH A 68 668 35 HOH HOH . D 4 HOH A 69 669 56 HOH HOH . D 4 HOH A 70 670 74 HOH HOH . D 4 HOH A 71 671 37 HOH HOH . D 4 HOH A 72 672 88 HOH HOH . D 4 HOH A 73 673 15 HOH HOH . D 4 HOH A 74 674 4 HOH HOH . D 4 HOH A 75 675 8 HOH HOH . D 4 HOH A 76 676 69 HOH HOH . D 4 HOH A 77 677 52 HOH HOH . D 4 HOH A 78 678 89 HOH HOH . D 4 HOH A 79 679 114 HOH HOH . D 4 HOH A 80 680 77 HOH HOH . D 4 HOH A 81 681 18 HOH HOH . D 4 HOH A 82 682 41 HOH HOH . D 4 HOH A 83 683 122 HOH HOH . D 4 HOH A 84 684 16 HOH HOH . D 4 HOH A 85 685 66 HOH HOH . D 4 HOH A 86 686 17 HOH HOH . D 4 HOH A 87 687 131 HOH HOH . D 4 HOH A 88 688 44 HOH HOH . D 4 HOH A 89 689 97 HOH HOH . D 4 HOH A 90 690 33 HOH HOH . D 4 HOH A 91 691 143 HOH HOH . D 4 HOH A 92 692 136 HOH HOH . D 4 HOH A 93 693 73 HOH HOH . D 4 HOH A 94 694 72 HOH HOH . D 4 HOH A 95 695 86 HOH HOH . D 4 HOH A 96 696 32 HOH HOH . D 4 HOH A 97 697 31 HOH HOH . D 4 HOH A 98 698 5 HOH HOH . D 4 HOH A 99 699 144 HOH HOH . D 4 HOH A 100 700 93 HOH HOH . D 4 HOH A 101 701 125 HOH HOH . D 4 HOH A 102 702 19 HOH HOH . D 4 HOH A 103 703 112 HOH HOH . D 4 HOH A 104 704 27 HOH HOH . D 4 HOH A 105 705 140 HOH HOH . D 4 HOH A 106 706 123 HOH HOH . D 4 HOH A 107 707 39 HOH HOH . D 4 HOH A 108 708 79 HOH HOH . D 4 HOH A 109 709 59 HOH HOH . D 4 HOH A 110 710 124 HOH HOH . D 4 HOH A 111 711 126 HOH HOH . D 4 HOH A 112 712 102 HOH HOH . D 4 HOH A 113 713 51 HOH HOH . D 4 HOH A 114 714 58 HOH HOH . D 4 HOH A 115 715 82 HOH HOH . D 4 HOH A 116 716 116 HOH HOH . D 4 HOH A 117 717 75 HOH HOH . D 4 HOH A 118 718 145 HOH HOH . D 4 HOH A 119 719 68 HOH HOH . D 4 HOH A 120 720 108 HOH HOH . D 4 HOH A 121 721 92 HOH HOH . D 4 HOH A 122 722 91 HOH HOH . D 4 HOH A 123 723 127 HOH HOH . D 4 HOH A 124 724 121 HOH HOH . D 4 HOH A 125 725 141 HOH HOH . D 4 HOH A 126 726 61 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 3 3.662 34.829 24.154 1 52.81 ? C1 GOL 502 A 1 HETATM 2 O O1 GOL . . . C 3 3.815 35.993 23.402 1 49.63 ? O1 GOL 502 A 1 HETATM 3 C C2 GOL . . . C 3 4.358 35.073 25.513 1 53.33 ? C2 GOL 502 A 1 HETATM 4 O O2 GOL . . . C 3 3.852 34.258 26.515 1 60.37 ? O2 GOL 502 A 1 HETATM 5 C C3 GOL . . . C 3 5.851 34.797 25.242 1 60.42 ? C3 GOL 502 A 1 HETATM 6 O O3 GOL . . . C 3 6.309 35.837 24.438 1 63.63 ? O3 GOL 502 A 1 # _model_server_stats.io_time_ms 11 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 285 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 6 #