data_8CG5
#
_model_server_result.job_id            wwqsJj1SeskMB5YviVzEQQ 
_model_server_result.datetime_utc      '2024-10-11 05:23:52' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cg5 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":2000}' 
#
_entry.id    8CG5 
#
_exptl.entry_id    8CG5 
_exptl.method      'ELECTRON MICROSCOPY' 
#
_entity.details                     ? 
_entity.formula_weight              397.361 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-[2-(propanoylamino)ethyl]-beta-alaninamide 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CG5 
_cell.length_a            1 
_cell.length_b            1 
_cell.length_c            1 
_cell.Z_PDB               ? 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CG5 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        1 
_symmetry.space_group_name_Hall    ? 
_symmetry.space_group_name_H-M     'P 1' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    trimeric 
_pdbx_struct_assembly.oligomeric_count      3 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    ? 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             D 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
covale ? covale1 A SG CYS 553 A CYS 553 1_555 D C46 42X . C 42X 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.795 ? 
covale ? covale2 C OG SER 46 C SER 46 1_555 D P02 42X . C 42X 2000 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.651 ? 
#
_chem_comp.formula           'C14 H28 N3 O8 P' 
_chem_comp.formula_weight    397.361 
_chem_comp.id                42X 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              N~3~-[(2R)-2-hydroxy-3,3-dimethyl-4-(phosphonooxy)butanoyl]-N-[2-(propanoylamino)ethyl]-beta-alaninamide 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
O45 C44 42X doub 1 n n 
C39 C36 42X sing 2 n n 
C39 N42 42X sing 3 n n 
C36 N34 42X sing 4 n n 
O33 C32 42X doub 5 n n 
C44 N42 42X sing 6 n n 
C44 C46 42X sing 7 n n 
O23 C22 42X doub 8 n n 
N34 C32 42X sing 9 n n 
C18 C22 42X sing 10 n n 
C18 O20 42X sing 11 n n 
C18 C09 42X sing 12 n n 
C32 C29 42X sing 13 n n 
C46 C49 42X sing 14 n n 
C22 N24 42X sing 15 n n 
C10 C09 42X sing 16 n n 
C14 C09 42X sing 17 n n 
C09 C06 42X sing 18 n n 
N24 C26 42X sing 19 n n 
C26 C29 42X sing 20 n n 
C06 O05 42X sing 21 n n 
O05 P02 42X sing 22 n n 
P02 O03 42X doub 23 n n 
P02 O04 42X sing 24 n n 
P02 O01 42X sing 25 n n 
C14 H1 42X sing 26 n n 
C14 H2 42X sing 27 n n 
C14 H3 42X sing 28 n n 
C10 H4 42X sing 29 n n 
C10 H5 42X sing 30 n n 
C10 H6 42X sing 31 n n 
O01 H7 42X sing 32 n n 
O04 H8 42X sing 33 n n 
C06 H9 42X sing 34 n n 
C06 H10 42X sing 35 n n 
C18 H11 42X sing 36 n n 
O20 H12 42X sing 37 n n 
N24 H13 42X sing 38 n n 
C26 H14 42X sing 39 n n 
C26 H15 42X sing 40 n n 
C29 H16 42X sing 41 n n 
C29 H17 42X sing 42 n n 
N34 H18 42X sing 43 n n 
C36 H19 42X sing 44 n n 
C36 H20 42X sing 45 n n 
C39 H21 42X sing 46 n n 
C39 H22 42X sing 47 n n 
N42 H23 42X sing 48 n n 
C46 H24 42X sing 49 n n 
C46 H25 42X sing 50 n n 
C49 H26 42X sing 51 n n 
C49 H27 42X sing 52 n n 
C49 H28 42X sing 53 n n 
#
_atom_sites.entry_id                     8CG5 
_atom_sites.fract_transf_matrix[1][1]    1 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    1 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    1 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
_pdbx_nonpoly_scheme.asym_id          D 
_pdbx_nonpoly_scheme.entity_id        3 
_pdbx_nonpoly_scheme.mon_id           42X 
_pdbx_nonpoly_scheme.pdb_strand_id    C 
_pdbx_nonpoly_scheme.ndb_seq_num      1 
_pdbx_nonpoly_scheme.pdb_seq_num      2000 
_pdbx_nonpoly_scheme.auth_seq_num     2000 
_pdbx_nonpoly_scheme.pdb_mon_id       42X 
_pdbx_nonpoly_scheme.auth_mon_id      MRJ 
_pdbx_nonpoly_scheme.pdb_ins_code     . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C14 42X . . . D 3 167.668 175.266 185.3 1 128.7 ? C14 42X 2000 C 1 
HETATM 2 C C10 42X . . . D 3 167.449 177.153 186.922 1 120.2 ? C10 42X 2000 C 1 
HETATM 3 O O01 42X . . . D 3 171.535 177.859 183.74 1 133.18 ? O01 42X 2000 C 1 
HETATM 4 P P02 42X . . . D 3 171.718 177.939 185.236 1 132.44 ? P02 42X 2000 C 1 
HETATM 5 O O03 42X . . . D 3 172.285 179.289 185.6 1 130.84 ? O03 42X 2000 C 1 
HETATM 6 O O05 42X . . . D 3 170.259 177.774 185.978 1 129.29 ? O05 42X 2000 C 1 
HETATM 7 C C06 42X . . . D 3 169.672 176.509 186.013 1 126.98 ? C06 42X 2000 C 1 
HETATM 8 C C09 42X . . . D 3 168.189 176.648 185.684 1 129.62 ? C09 42X 2000 C 1 
HETATM 9 C C18 42X . . . D 3 168.044 177.655 184.542 1 130.92 ? C18 42X 2000 C 1 
HETATM 10 O O20 42X . . . D 3 169.199 177.601 183.753 1 131.97 ? O20 42X 2000 C 1 
HETATM 11 C C22 42X . . . D 3 166.844 177.355 183.645 1 130.93 ? C22 42X 2000 C 1 
HETATM 12 O O23 42X . . . D 3 166.991 177.362 182.47 1 130.73 ? O23 42X 2000 C 1 
HETATM 13 N N24 42X . . . D 3 165.535 177.065 184.198 1 130.41 ? N24 42X 2000 C 1 
HETATM 14 C C26 42X . . . D 3 164.432 176.782 183.301 1 126.93 ? C26 42X 2000 C 1 
HETATM 15 C C29 42X . . . D 3 164.791 175.547 182.482 1 126.91 ? C29 42X 2000 C 1 
HETATM 16 C C32 42X . . . D 3 163.557 174.685 182.239 1 131.36 ? C32 42X 2000 C 1 
HETATM 17 O O33 42X . . . D 3 163.641 173.507 182.329 1 134.28 ? O33 42X 2000 C 1 
HETATM 18 N N34 42X . . . D 3 162.283 175.29 181.898 1 129.72 ? N34 42X 2000 C 1 
HETATM 19 C C36 42X . . . D 3 161.125 174.445 181.669 1 121.55 ? C36 42X 2000 C 1 
HETATM 20 C C39 42X . . . D 3 160.733 173.723 182.957 1 126.93 ? C39 42X 2000 C 1 
HETATM 21 N N42 42X . . . D 3 160.392 172.349 182.64 1 132.78 ? N42 42X 2000 C 1 
HETATM 22 C C44 42X . . . D 3 160.32 171.357 183.698 1 134.84 ? C44 42X 2000 C 1 
HETATM 23 O O45 42X . . . D 3 160.535 171.673 184.819 1 133.2 ? O45 42X 2000 C 1 
HETATM 24 C C46 42X . . . D 3 159.965 169.907 183.382 1 129.13 ? C46 42X 2000 C 1 
HETATM 25 C C49 42X . . . D 3 160.029 169.022 184.626 1 117.54 ? C49 42X 2000 C 1 
HETATM 26 H H1 42X . . . D 3 166.596 175.218 185.458 1 125.69 ? H1 42X 2000 C 1 
HETATM 27 H H2 42X . . . D 3 168.152 174.521 185.924 1 126.09 ? H2 42X 2000 C 1 
HETATM 28 H H3 42X . . . D 3 167.899 175.064 184.259 1 125.72 ? H3 42X 2000 C 1 
HETATM 29 H H4 42X . . . D 3 167.009 176.313 187.45 1 124.01 ? H4 42X 2000 C 1 
HETATM 30 H H5 42X . . . D 3 168.149 177.663 187.577 1 125.02 ? H5 42X 2000 C 1 
HETATM 31 H H6 42X . . . D 3 166.666 177.844 186.624 1 125.38 ? H6 42X 2000 C 1 
HETATM 32 H H9 42X . . . D 3 170.149 175.865 185.282 1 125.98 ? H9 42X 2000 C 1 
HETATM 33 H H10 42X . . . D 3 169.787 176.082 187.004 1 125.94 ? H10 42X 2000 C 1 
HETATM 34 H H11 42X . . . D 3 167.942 178.652 184.952 1 126.34 ? H11 42X 2000 C 1 
HETATM 35 H H12 42X . . . D 3 169.389 178.461 183.413 1 126.5 ? H12 42X 2000 C 1 
HETATM 36 H H13 42X . . . D 3 165.395 177.053 185.189 1 126.25 ? H13 42X 2000 C 1 
HETATM 37 H H14 42X . . . D 3 163.532 176.591 183.877 1 125.94 ? H14 42X 2000 C 1 
HETATM 38 H H15 42X . . . D 3 164.271 177.627 182.64 1 126.06 ? H15 42X 2000 C 1 
HETATM 39 H H16 42X . . . D 3 165.203 175.858 181.527 1 125.6 ? H16 42X 2000 C 1 
HETATM 40 H H17 42X . . . D 3 165.533 174.964 183.018 1 125.71 ? H17 42X 2000 C 1 
HETATM 41 H H18 42X . . . D 3 162.205 176.285 181.819 1 126.18 ? H18 42X 2000 C 1 
HETATM 42 H H19 42X . . . D 3 161.363 173.713 180.904 1 124.36 ? H19 42X 2000 C 1 
HETATM 43 H H20 42X . . . D 3 160.295 175.058 181.332 1 124.75 ? H20 42X 2000 C 1 
HETATM 44 H H21 42X . . . D 3 161.556 173.738 183.662 1 125.78 ? H21 42X 2000 C 1 
HETATM 45 H H22 42X . . . D 3 159.873 174.215 183.398 1 124.9 ? H22 42X 2000 C 1 
HETATM 46 H H23 42X . . . D 3 160.212 172.086 181.692 1 125.2 ? H23 42X 2000 C 1 
HETATM 47 H H25 42X . . . D 3 160.65 169.525 182.635 1 125.58 ? H25 42X 2000 C 1 
HETATM 48 H H26 42X . . . D 3 159.344 169.402 185.377 1 124.12 ? H26 42X 2000 C 1 
HETATM 49 H H27 42X . . . D 3 161.04 169.03 185.023 1 124.8 ? H27 42X 2000 C 1 
HETATM 50 H H28 42X . . . D 3 159.752 168.006 184.363 1 124.98 ? H28 42X 2000 C 1 
#
_model_server_stats.io_time_ms              118 
_model_server_stats.parse_time_ms           23 
_model_server_stats.create_model_time_ms    27 
_model_server_stats.query_time_ms           299 
_model_server_stats.encode_time_ms          17 
_model_server_stats.element_count           50 
#