data_8CGA # _model_server_result.job_id vHCp94R1VSUl2kIzRRsuFg _model_server_result.datetime_utc '2024-11-14 13:27:10' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cga # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":203}' # _entry.id 8CGA # _exptl.entry_id 8CGA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 5 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CGA _cell.length_a 55.249 _cell.length_b 55.249 _cell.length_c 83.751 _cell.Z_PDB 6 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CGA _symmetry.cell_setting ? _symmetry.Int_Tables_number 173 _symmetry.space_group_name_Hall 'P 6c' _symmetry.space_group_name_H-M 'P 63' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 2_545 -y,x-y-1,z -0.5 -0.866025 0 0.866025 -0.5 0 0 0 1 27.6245 -47.847038 0 3 'crystal symmetry operation' 3_655 -x+y+1,-x,z -0.5 0.866025 0 -0.866025 -0.5 0 0 0 1 55.249 0 0 # _struct_asym.details ? _struct_asym.entity_id 5 _struct_asym.id E _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 B O1A DUP . A DUP 200 1_555 C MG MG . A MG 201 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? metalc ? metalc2 B O1B DUP . A DUP 200 1_555 C MG MG . A MG 201 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.086 ? metalc ? metalc3 B O2G DUP . A DUP 200 1_555 C MG MG . A MG 201 2_545 ? ? ? ? ? ? ? ? ? ? ? ? 2.02 ? metalc ? metalc4 C MG MG . A MG 201 1_555 G O HOH . A HOH 312 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.088 ? metalc ? metalc5 C MG MG . A MG 201 1_555 G O HOH . A HOH 313 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? metalc ? metalc6 C MG MG . A MG 201 1_555 G O HOH . A HOH 371 3_655 ? ? ? ? ? ? ? ? ? ? ? ? 2.099 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 161 n n C1 C2 GOL sing 162 n n C1 H11 GOL sing 163 n n C1 H12 GOL sing 164 n n O1 HO1 GOL sing 165 n n C2 O2 GOL sing 166 n n C2 C3 GOL sing 167 n n C2 H2 GOL sing 168 n n O2 HO2 GOL sing 169 n n C3 O3 GOL sing 170 n n C3 H31 GOL sing 171 n n C3 H32 GOL sing 172 n n O3 HO3 GOL sing 173 n n # _atom_sites.entry_id 8CGA _atom_sites.fract_transf_matrix[1][1] 0.0181 _atom_sites.fract_transf_matrix[1][2] 0.01045 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.0209 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.01194 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 DUP A 1 200 200 DUP DUP . C 3 MG A 1 201 201 MG MG . D 4 SO4 A 1 202 202 SO4 SO4 . E 5 GOL A 1 203 203 GOL GOL . F 6 TRS A 1 204 204 TRS TRS . G 7 HOH A 1 301 45 HOH HOH . G 7 HOH A 2 302 57 HOH HOH . G 7 HOH A 3 303 26 HOH HOH . G 7 HOH A 4 304 16 HOH HOH . G 7 HOH A 5 305 23 HOH HOH . G 7 HOH A 6 306 53 HOH HOH . G 7 HOH A 7 307 75 HOH HOH . G 7 HOH A 8 308 49 HOH HOH . G 7 HOH A 9 309 36 HOH HOH . G 7 HOH A 10 310 21 HOH HOH . G 7 HOH A 11 311 58 HOH HOH . G 7 HOH A 12 312 6 HOH HOH . G 7 HOH A 13 313 7 HOH HOH . G 7 HOH A 14 314 12 HOH HOH . G 7 HOH A 15 315 66 HOH HOH . G 7 HOH A 16 316 46 HOH HOH . G 7 HOH A 17 317 74 HOH HOH . G 7 HOH A 18 318 14 HOH HOH . G 7 HOH A 19 319 73 HOH HOH . G 7 HOH A 20 320 22 HOH HOH . G 7 HOH A 21 321 55 HOH HOH . G 7 HOH A 22 322 11 HOH HOH . G 7 HOH A 23 323 62 HOH HOH . G 7 HOH A 24 324 80 HOH HOH . G 7 HOH A 25 325 41 HOH HOH . G 7 HOH A 26 326 39 HOH HOH . G 7 HOH A 27 327 33 HOH HOH . G 7 HOH A 28 328 67 HOH HOH . G 7 HOH A 29 329 1 HOH HOH . G 7 HOH A 30 330 10 HOH HOH . G 7 HOH A 31 331 15 HOH HOH . G 7 HOH A 32 332 28 HOH HOH . G 7 HOH A 33 333 97 HOH HOH . G 7 HOH A 34 334 17 HOH HOH . G 7 HOH A 35 335 65 HOH HOH . G 7 HOH A 36 336 13 HOH HOH . G 7 HOH A 37 337 85 HOH HOH . G 7 HOH A 38 338 99 HOH HOH . G 7 HOH A 39 339 31 HOH HOH . G 7 HOH A 40 340 63 HOH HOH . G 7 HOH A 41 341 24 HOH HOH . G 7 HOH A 42 342 18 HOH HOH . G 7 HOH A 43 343 68 HOH HOH . G 7 HOH A 44 344 19 HOH HOH . G 7 HOH A 45 345 5 HOH HOH . G 7 HOH A 46 346 20 HOH HOH . G 7 HOH A 47 347 37 HOH HOH . G 7 HOH A 48 348 2 HOH HOH . G 7 HOH A 49 349 25 HOH HOH . G 7 HOH A 50 350 50 HOH HOH . G 7 HOH A 51 351 8 HOH HOH . G 7 HOH A 52 352 4 HOH HOH . G 7 HOH A 53 353 3 HOH HOH . G 7 HOH A 54 354 48 HOH HOH . G 7 HOH A 55 355 30 HOH HOH . G 7 HOH A 56 356 64 HOH HOH . G 7 HOH A 57 357 51 HOH HOH . G 7 HOH A 58 358 35 HOH HOH . G 7 HOH A 59 359 86 HOH HOH . G 7 HOH A 60 360 54 HOH HOH . G 7 HOH A 61 361 79 HOH HOH . G 7 HOH A 62 362 94 HOH HOH . G 7 HOH A 63 363 71 HOH HOH . G 7 HOH A 64 364 32 HOH HOH . G 7 HOH A 65 365 29 HOH HOH . G 7 HOH A 66 366 91 HOH HOH . G 7 HOH A 67 367 27 HOH HOH . G 7 HOH A 68 368 34 HOH HOH . G 7 HOH A 69 369 38 HOH HOH . G 7 HOH A 70 370 98 HOH HOH . G 7 HOH A 71 371 9 HOH HOH . G 7 HOH A 72 372 52 HOH HOH . G 7 HOH A 73 373 70 HOH HOH . G 7 HOH A 74 374 40 HOH HOH . G 7 HOH A 75 375 56 HOH HOH . G 7 HOH A 76 376 69 HOH HOH . G 7 HOH A 77 377 90 HOH HOH . G 7 HOH A 78 378 78 HOH HOH . G 7 HOH A 79 379 76 HOH HOH . G 7 HOH A 80 380 81 HOH HOH . G 7 HOH A 81 381 60 HOH HOH . G 7 HOH A 82 382 61 HOH HOH . G 7 HOH A 83 383 95 HOH HOH . G 7 HOH A 84 384 43 HOH HOH . G 7 HOH A 85 385 44 HOH HOH . G 7 HOH A 86 386 100 HOH HOH . G 7 HOH A 87 387 42 HOH HOH . G 7 HOH A 88 388 92 HOH HOH . G 7 HOH A 89 389 47 HOH HOH . G 7 HOH A 90 390 84 HOH HOH . G 7 HOH A 91 391 89 HOH HOH . G 7 HOH A 92 392 93 HOH HOH . G 7 HOH A 93 393 96 HOH HOH . G 7 HOH A 94 394 101 HOH HOH . G 7 HOH A 95 395 87 HOH HOH . G 7 HOH A 96 396 88 HOH HOH . G 7 HOH A 97 397 82 HOH HOH . G 7 HOH A 98 398 72 HOH HOH . G 7 HOH A 99 399 83 HOH HOH . G 7 HOH A 100 400 59 HOH HOH . G 7 HOH A 101 401 77 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . E 5 32.179 10.401 -9.391 1 20.61 ? C1 GOL 203 A 1 HETATM 2 O O1 GOL . . . E 5 32.495 9.482 -8.348 1 22.32 ? O1 GOL 203 A 1 HETATM 3 C C2 GOL . . . E 5 32.938 11.702 -9.23 1 21.72 ? C2 GOL 203 A 1 HETATM 4 O O2 GOL . . . E 5 34.345 11.478 -9.285 1 24.73 ? O2 GOL 203 A 1 HETATM 5 C C3 GOL . . . E 5 32.592 12.429 -7.951 1 19.5 ? C3 GOL 203 A 1 HETATM 6 O O3 GOL . . . E 5 31.211 12.771 -7.932 1 17.32 ? O3 GOL 203 A 1 # _model_server_stats.io_time_ms 13 _model_server_stats.parse_time_ms 25 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 334 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #