data_8CGB # _model_server_result.job_id 2udaVuPnkj4f-h2Oh7tNbw _model_server_result.datetime_utc '2024-10-10 03:22:01' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cgb # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":401}' # _entry.id 8CGB # _exptl.entry_id 8CGB _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 384.411 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description S-ADENOSYL-L-HOMOCYSTEINE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CGB _cell.length_a 52.32 _cell.length_b 84.1 _cell.length_c 154.87 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CGB _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 21 21 21' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? monomeric 1 author_defined_assembly 1 ? monomeric 1 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,C,D 1 1 B,E 2 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C14 H20 N6 O5 S' _chem_comp.formula_weight 384.411 _chem_comp.id SAH _chem_comp.mon_nstd_flag n _chem_comp.name S-ADENOSYL-L-HOMOCYSTEINE _chem_comp.type 'l-peptide linking' _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N CA SAH sing 277 n n N HN1 SAH sing 278 n n N HN2 SAH sing 279 n n CA CB SAH sing 280 n n CA C SAH sing 281 n n CA HA SAH sing 282 n n CB CG SAH sing 283 n n CB HB1 SAH sing 284 n n CB HB2 SAH sing 285 n n CG SD SAH sing 286 n n CG HG1 SAH sing 287 n n CG HG2 SAH sing 288 n n SD C5' SAH sing 289 n n C O SAH doub 290 n n C OXT SAH sing 291 n n OXT HXT SAH sing 292 n n C5' C4' SAH sing 293 n n C5' "H5'1" SAH sing 294 n n C5' "H5'2" SAH sing 295 n n C4' O4' SAH sing 296 n n C4' C3' SAH sing 297 n n C4' H4' SAH sing 298 n n O4' C1' SAH sing 299 n n C3' O3' SAH sing 300 n n C3' C2' SAH sing 301 n n C3' H3' SAH sing 302 n n O3' HO3' SAH sing 303 n n C2' O2' SAH sing 304 n n C2' C1' SAH sing 305 n n C2' H2' SAH sing 306 n n O2' HO2' SAH sing 307 n n C1' N9 SAH sing 308 n n C1' H1' SAH sing 309 n n N9 C8 SAH sing 310 n y N9 C4 SAH sing 311 n y C8 N7 SAH doub 312 n y C8 H8 SAH sing 313 n n N7 C5 SAH sing 314 n y C5 C6 SAH sing 315 n y C5 C4 SAH doub 316 n y C6 N6 SAH sing 317 n n C6 N1 SAH doub 318 n y N6 HN61 SAH sing 319 n n N6 HN62 SAH sing 320 n n N1 C2 SAH sing 321 n y C2 N3 SAH doub 322 n y C2 H2 SAH sing 323 n n N3 C4 SAH sing 324 n y # _atom_sites.entry_id 8CGB _atom_sites.fract_transf_matrix[1][1] 0.019113 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.011891 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.006457 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SAH A 1 401 301 SAH SAH . D 3 HOH A 1 501 151 HOH HOH . D 3 HOH A 2 502 61 HOH HOH . D 3 HOH A 3 503 128 HOH HOH . D 3 HOH A 4 504 69 HOH HOH . D 3 HOH A 5 505 104 HOH HOH . D 3 HOH A 6 506 110 HOH HOH . D 3 HOH A 7 507 5 HOH HOH . D 3 HOH A 8 508 172 HOH HOH . D 3 HOH A 9 509 16 HOH HOH . D 3 HOH A 10 510 115 HOH HOH . D 3 HOH A 11 511 136 HOH HOH . D 3 HOH A 12 512 63 HOH HOH . D 3 HOH A 13 513 11 HOH HOH . D 3 HOH A 14 514 76 HOH HOH . D 3 HOH A 15 515 105 HOH HOH . D 3 HOH A 16 516 101 HOH HOH . D 3 HOH A 17 517 30 HOH HOH . D 3 HOH A 18 518 68 HOH HOH . D 3 HOH A 19 519 98 HOH HOH . D 3 HOH A 20 520 9 HOH HOH . D 3 HOH A 21 521 62 HOH HOH . D 3 HOH A 22 522 70 HOH HOH . D 3 HOH A 23 523 33 HOH HOH . D 3 HOH A 24 524 31 HOH HOH . D 3 HOH A 25 525 74 HOH HOH . D 3 HOH A 26 526 94 HOH HOH . D 3 HOH A 27 527 2 HOH HOH . D 3 HOH A 28 528 19 HOH HOH . D 3 HOH A 29 529 60 HOH HOH . D 3 HOH A 30 530 92 HOH HOH . D 3 HOH A 31 531 119 HOH HOH . D 3 HOH A 32 532 131 HOH HOH . D 3 HOH A 33 533 25 HOH HOH . D 3 HOH A 34 534 49 HOH HOH . D 3 HOH A 35 535 72 HOH HOH . D 3 HOH A 36 536 6 HOH HOH . D 3 HOH A 37 537 17 HOH HOH . D 3 HOH A 38 538 12 HOH HOH . D 3 HOH A 39 539 43 HOH HOH . D 3 HOH A 40 540 168 HOH HOH . D 3 HOH A 41 541 159 HOH HOH . D 3 HOH A 42 542 163 HOH HOH . D 3 HOH A 43 543 177 HOH HOH . D 3 HOH A 44 544 34 HOH HOH . D 3 HOH A 45 545 7 HOH HOH . D 3 HOH A 46 546 176 HOH HOH . D 3 HOH A 47 547 87 HOH HOH . D 3 HOH A 48 548 35 HOH HOH . D 3 HOH A 49 549 111 HOH HOH . D 3 HOH A 50 550 106 HOH HOH . D 3 HOH A 51 551 22 HOH HOH . D 3 HOH A 52 552 162 HOH HOH . D 3 HOH A 53 553 112 HOH HOH . D 3 HOH A 54 554 52 HOH HOH . D 3 HOH A 55 555 167 HOH HOH . D 3 HOH A 56 556 4 HOH HOH . D 3 HOH A 57 557 23 HOH HOH . D 3 HOH A 58 558 42 HOH HOH . D 3 HOH A 59 559 13 HOH HOH . D 3 HOH A 60 560 20 HOH HOH . D 3 HOH A 61 561 41 HOH HOH . D 3 HOH A 62 562 134 HOH HOH . D 3 HOH A 63 563 121 HOH HOH . D 3 HOH A 64 564 157 HOH HOH . D 3 HOH A 65 565 127 HOH HOH . D 3 HOH A 66 566 85 HOH HOH . D 3 HOH A 67 567 71 HOH HOH . D 3 HOH A 68 568 40 HOH HOH . D 3 HOH A 69 569 64 HOH HOH . D 3 HOH A 70 570 97 HOH HOH . D 3 HOH A 71 571 191 HOH HOH . D 3 HOH A 72 572 29 HOH HOH . D 3 HOH A 73 573 126 HOH HOH . D 3 HOH A 74 574 75 HOH HOH . D 3 HOH A 75 575 174 HOH HOH . D 3 HOH A 76 576 95 HOH HOH . D 3 HOH A 77 577 79 HOH HOH . D 3 HOH A 78 578 164 HOH HOH . D 3 HOH A 79 579 55 HOH HOH . D 3 HOH A 80 580 194 HOH HOH . D 3 HOH A 81 581 193 HOH HOH . D 3 HOH A 82 582 82 HOH HOH . D 3 HOH A 83 583 150 HOH HOH . D 3 HOH A 84 584 113 HOH HOH . D 3 HOH A 85 585 28 HOH HOH . D 3 HOH A 86 586 14 HOH HOH . D 3 HOH A 87 587 117 HOH HOH . D 3 HOH A 88 588 86 HOH HOH . D 3 HOH A 89 589 166 HOH HOH . D 3 HOH A 90 590 37 HOH HOH . D 3 HOH A 91 591 188 HOH HOH . D 3 HOH A 92 592 139 HOH HOH . D 3 HOH A 93 593 129 HOH HOH . D 3 HOH A 94 594 77 HOH HOH . D 3 HOH A 95 595 91 HOH HOH . D 3 HOH A 96 596 171 HOH HOH . D 3 HOH A 97 597 183 HOH HOH . D 3 HOH A 98 598 170 HOH HOH . D 3 HOH A 99 599 125 HOH HOH . D 3 HOH A 100 600 169 HOH HOH . D 3 HOH A 101 601 180 HOH HOH . D 3 HOH A 102 602 195 HOH HOH . D 3 HOH A 103 603 181 HOH HOH . D 3 HOH A 104 604 90 HOH HOH . D 3 HOH A 105 605 152 HOH HOH . D 3 HOH A 106 606 109 HOH HOH . D 3 HOH A 107 607 184 HOH HOH . D 3 HOH A 108 608 192 HOH HOH . D 3 HOH A 109 609 96 HOH HOH . D 3 HOH A 110 610 187 HOH HOH . D 3 HOH A 111 611 66 HOH HOH . D 3 HOH A 112 612 146 HOH HOH . D 3 HOH A 113 613 73 HOH HOH . D 3 HOH A 114 614 130 HOH HOH . D 3 HOH A 115 615 165 HOH HOH . D 3 HOH A 116 616 118 HOH HOH . D 3 HOH A 117 617 56 HOH HOH . E 3 HOH B 1 401 145 HOH HOH . E 3 HOH B 2 402 155 HOH HOH . E 3 HOH B 3 403 143 HOH HOH . E 3 HOH B 4 404 153 HOH HOH . E 3 HOH B 5 405 148 HOH HOH . E 3 HOH B 6 406 32 HOH HOH . E 3 HOH B 7 407 116 HOH HOH . E 3 HOH B 8 408 158 HOH HOH . E 3 HOH B 9 409 186 HOH HOH . E 3 HOH B 10 410 48 HOH HOH . E 3 HOH B 11 411 84 HOH HOH . E 3 HOH B 12 412 27 HOH HOH . E 3 HOH B 13 413 88 HOH HOH . E 3 HOH B 14 414 108 HOH HOH . E 3 HOH B 15 415 1 HOH HOH . E 3 HOH B 16 416 103 HOH HOH . E 3 HOH B 17 417 36 HOH HOH . E 3 HOH B 18 418 10 HOH HOH . E 3 HOH B 19 419 3 HOH HOH . E 3 HOH B 20 420 44 HOH HOH . E 3 HOH B 21 421 178 HOH HOH . E 3 HOH B 22 422 18 HOH HOH . E 3 HOH B 23 423 24 HOH HOH . E 3 HOH B 24 424 185 HOH HOH . E 3 HOH B 25 425 26 HOH HOH . E 3 HOH B 26 426 8 HOH HOH . E 3 HOH B 27 427 21 HOH HOH . E 3 HOH B 28 428 107 HOH HOH . E 3 HOH B 29 429 65 HOH HOH . E 3 HOH B 30 430 57 HOH HOH . E 3 HOH B 31 431 147 HOH HOH . E 3 HOH B 32 432 160 HOH HOH . E 3 HOH B 33 433 100 HOH HOH . E 3 HOH B 34 434 51 HOH HOH . E 3 HOH B 35 435 59 HOH HOH . E 3 HOH B 36 436 81 HOH HOH . E 3 HOH B 37 437 53 HOH HOH . E 3 HOH B 38 438 54 HOH HOH . E 3 HOH B 39 439 135 HOH HOH . E 3 HOH B 40 440 80 HOH HOH . E 3 HOH B 41 441 58 HOH HOH . E 3 HOH B 42 442 123 HOH HOH . E 3 HOH B 43 443 45 HOH HOH . E 3 HOH B 44 444 15 HOH HOH . E 3 HOH B 45 445 137 HOH HOH . E 3 HOH B 46 446 154 HOH HOH . E 3 HOH B 47 447 67 HOH HOH . E 3 HOH B 48 448 156 HOH HOH . E 3 HOH B 49 449 89 HOH HOH . E 3 HOH B 50 450 47 HOH HOH . E 3 HOH B 51 451 46 HOH HOH . E 3 HOH B 52 452 138 HOH HOH . E 3 HOH B 53 453 182 HOH HOH . E 3 HOH B 54 454 114 HOH HOH . E 3 HOH B 55 455 190 HOH HOH . E 3 HOH B 56 456 179 HOH HOH . E 3 HOH B 57 457 38 HOH HOH . E 3 HOH B 58 458 99 HOH HOH . E 3 HOH B 59 459 132 HOH HOH . E 3 HOH B 60 460 144 HOH HOH . E 3 HOH B 61 461 142 HOH HOH . E 3 HOH B 62 462 102 HOH HOH . E 3 HOH B 63 463 141 HOH HOH . E 3 HOH B 64 464 93 HOH HOH . E 3 HOH B 65 465 83 HOH HOH . E 3 HOH B 66 466 78 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 N N SAH . . . C 2 -7.255 13.64 -35.921 1 34.49 ? N SAH 401 A 1 HETATM 2 C CA SAH . . . C 2 -5.844 13.393 -36.303 1 37.49 ? CA SAH 401 A 1 HETATM 3 C CB SAH . . . C 2 -5.019 12.931 -35.095 1 45.07 ? CB SAH 401 A 1 HETATM 4 C CG SAH . . . C 2 -4.727 14.051 -34.137 1 44.04 ? CG SAH 401 A 1 HETATM 5 S SD SAH . . . C 2 -3.557 13.633 -32.828 1 47.71 ? SD SAH 401 A 1 HETATM 6 C C SAH . . . C 2 -5.824 12.346 -37.414 1 36.24 ? C SAH 401 A 1 HETATM 7 O O SAH . . . C 2 -4.833 11.633 -37.53 1 34.8 ? O SAH 401 A 1 HETATM 8 O OXT SAH . . . C 2 -6.802 12.31 -38.117 1 37.6 ? OXT SAH 401 A 1 HETATM 9 C C5' SAH . . . C 2 -3.403 15.181 -31.898 1 47.37 ? C5' SAH 401 A 1 HETATM 10 C C4' SAH . . . C 2 -3.177 16.402 -32.753 1 46.44 ? C4' SAH 401 A 1 HETATM 11 O O4' SAH . . . C 2 -3.536 17.589 -32.021 1 46.18 ? O4' SAH 401 A 1 HETATM 12 C C3' SAH . . . C 2 -1.722 16.606 -33.186 1 47.63 ? C3' SAH 401 A 1 HETATM 13 O O3' SAH . . . C 2 -1.612 16.431 -34.592 1 46.22 ? O3' SAH 401 A 1 HETATM 14 C C2' SAH . . . C 2 -1.402 18.041 -32.747 1 53.08 ? C2' SAH 401 A 1 HETATM 15 O O2' SAH . . . C 2 -0.618 18.728 -33.697 1 47.83 ? O2' SAH 401 A 1 HETATM 16 C C1' SAH . . . C 2 -2.804 18.623 -32.618 1 50.21 ? C1' SAH 401 A 1 HETATM 17 N N9 SAH . . . C 2 -2.911 19.82 -31.798 1 52.39 ? N9 SAH 401 A 1 HETATM 18 C C8 SAH . . . C 2 -2.637 19.941 -30.461 1 53.53 ? C8 SAH 401 A 1 HETATM 19 N N7 SAH . . . C 2 -2.84 21.147 -29.997 1 44.59 ? N7 SAH 401 A 1 HETATM 20 C C5 SAH . . . C 2 -3.285 21.866 -31.096 1 44.67 ? C5 SAH 401 A 1 HETATM 21 C C6 SAH . . . C 2 -3.669 23.209 -31.256 1 43.99 ? C6 SAH 401 A 1 HETATM 22 N N6 SAH . . . C 2 -3.665 24.099 -30.27 1 42.6 ? N6 SAH 401 A 1 HETATM 23 N N1 SAH . . . C 2 -4.056 23.604 -32.489 1 40.53 ? N1 SAH 401 A 1 HETATM 24 C C2 SAH . . . C 2 -4.056 22.705 -33.478 1 43.64 ? C2 SAH 401 A 1 HETATM 25 N N3 SAH . . . C 2 -3.718 21.421 -33.447 1 41.8 ? N3 SAH 401 A 1 HETATM 26 C C4 SAH . . . C 2 -3.336 21.057 -32.213 1 48.09 ? C4 SAH 401 A 1 HETATM 27 H H2 SAH . . . C 2 -4.336 23.029 -34.321 1 52.37 ? H2 SAH 401 A 1 HETATM 28 H HN1 SAH . . . C 2 -7.512 13.047 -35.281 1 41.39 ? HN1 SAH 401 A 1 HETATM 29 H HN2 SAH . . . C 2 -7.795 13.546 -36.648 1 41.39 ? HN2 SAH 401 A 1 HETATM 30 H HA SAH . . . C 2 -5.476 14.227 -36.649 1 44.99 ? HA SAH 401 A 1 HETATM 31 H HB1 SAH . . . C 2 -4.172 12.56 -35.403 1 54.08 ? HB1 SAH 401 A 1 HETATM 32 H HB2 SAH . . . C 2 -5.507 12.225 -34.63 1 54.08 ? HB2 SAH 401 A 1 HETATM 33 H HG1 SAH . . . C 2 -5.565 14.347 -33.723 1 52.85 ? HG1 SAH 401 A 1 HETATM 34 H HG2 SAH . . . C 2 -4.367 14.804 -34.648 1 52.85 ? HG2 SAH 401 A 1 HETATM 35 H "H5'1" SAH . . . C 2 -2.67 15.101 -31.293 1 56.85 ? "H5'1" SAH 401 A 1 HETATM 36 H "H5'2" SAH . . . C 2 -4.191 15.313 -31.387 1 56.85 ? "H5'2" SAH 401 A 1 HETATM 37 H H4' SAH . . . C 2 -3.743 16.355 -33.551 1 55.73 ? H4' SAH 401 A 1 HETATM 38 H H3' SAH . . . C 2 -1.132 15.965 -32.717 1 57.16 ? H3' SAH 401 A 1 HETATM 39 H HO3' SAH . . . C 2 -2.27 16.805 -34.973 1 55.47 ? HO3' SAH 401 A 1 HETATM 40 H H2' SAH . . . C 2 -0.948 18.039 -31.865 1 63.69 ? H2' SAH 401 A 1 HETATM 41 H HO2' SAH . . . C 2 -0.807 18.441 -34.472 1 57.39 ? HO2' SAH 401 A 1 HETATM 42 H H1' SAH . . . C 2 -3.157 18.804 -33.513 1 60.26 ? H1' SAH 401 A 1 HETATM 43 H H8 SAH . . . C 2 -2.329 19.228 -29.932 1 64.23 ? H8 SAH 401 A 1 HETATM 44 H HN61 SAH . . . C 2 -3.499 23.839 -29.45 1 51.11 ? HN61 SAH 401 A 1 HETATM 45 H HN62 SAH . . . C 2 -3.83 24.944 -30.446 1 51.11 ? HN62 SAH 401 A 1 HETATM 46 H HN3 SAH . . . C 2 -7.346 14.486 -35.594 1 41.39 ? HN3 SAH 401 A 1 # _model_server_stats.io_time_ms 32 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 284 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 46 #