data_8CHA # _model_server_result.job_id ynOhDmTVDjMnjAtK9hcSjQ _model_server_result.datetime_utc '2025-01-10 08:06:33' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cha # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"I","auth_seq_id":207}' # _entry.id 8CHA # _exptl.entry_id 8CHA _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 90.121 _entity.id 7 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 1,2-DIMETHOXYETHANE _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CHA _cell.length_a 49.931 _cell.length_b 76.526 _cell.length_c 108.279 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CHA _symmetry.cell_setting ? _symmetry.Int_Tables_number 20 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 2 2 21' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 7 _struct_asym.id I _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _pdbx_entity_branch.entity_id 2 _pdbx_entity_branch.type oligosaccharide # loop_ _pdbx_entity_branch_link.link_id _pdbx_entity_branch_link.details _pdbx_entity_branch_link.entity_id _pdbx_entity_branch_link.entity_branch_list_num_1 _pdbx_entity_branch_link.entity_branch_list_num_2 _pdbx_entity_branch_link.comp_id_1 _pdbx_entity_branch_link.comp_id_2 _pdbx_entity_branch_link.atom_id_1 _pdbx_entity_branch_link.leaving_atom_id_1 _pdbx_entity_branch_link.atom_stereo_config_1 _pdbx_entity_branch_link.atom_id_2 _pdbx_entity_branch_link.leaving_atom_id_2 _pdbx_entity_branch_link.atom_stereo_config_2 _pdbx_entity_branch_link.value_order 1 ? 2 2 1 NAG NAG C1 O1 . O4 HO4 . sing 2 ? 2 3 2 BMA NAG C1 O1 . O4 HO4 . sing 3 ? 2 4 3 MAN BMA C1 O1 . O3 HO3 . sing # loop_ _pdbx_branch_scheme.entity_id _pdbx_branch_scheme.hetero _pdbx_branch_scheme.asym_id _pdbx_branch_scheme.mon_id _pdbx_branch_scheme.num _pdbx_branch_scheme.pdb_asym_id _pdbx_branch_scheme.pdb_seq_num _pdbx_branch_scheme.pdb_mon_id _pdbx_branch_scheme.auth_asym_id _pdbx_branch_scheme.auth_seq_num _pdbx_branch_scheme.auth_mon_id 2 n B NAG 1 B 1 NAG B 1 NAG 2 n B NAG 2 B 2 NAG B 2 NAG 2 n B BMA 3 B 3 BMA B 3 BMA 2 n B MAN 4 B 4 MAN B 4 MAN # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 62 A CYS 29 1_555 A SG CYS 104 A CYS 71 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.026 ? disulf ? disulf2 A SG CYS 143 A CYS 110 1_555 A SG CYS 187 A CYS 154 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.031 ? covale ? covale1 A ND2 ASN 178 A ASN 145 1_555 B C1 NAG . B NAG 1 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.433 ? covale ? covale2 B O4 NAG . B NAG 1 1_555 B C1 NAG . B NAG 2 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.457 ? covale ? covale3 B O4 NAG . B NAG 2 1_555 B C1 BMA . B BMA 3 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.436 ? covale ? covale4 B O3 BMA . B BMA 3 1_555 B C1 MAN . B MAN 4 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.435 ? metalc ? metalc1 A OD2 ASP 169 A ASP 136 1_555 K NA NA . A NA 209 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.294 ? metalc ? metalc2 A OD1 ASP 169 A ASP 136 1_555 K NA NA . A NA 209 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.656 ? metalc ? metalc3 A OG1 THR 171 A THR 138 1_555 K NA NA . A NA 209 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.27 ? metalc ? metalc4 K NA NA . A NA 209 1_555 L O HOH . A HOH 301 4_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.441 ? metalc ? metalc5 K NA NA . A NA 209 1_555 L O HOH . A HOH 331 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.846 ? # _chem_comp.formula 'C4 H10 O2' _chem_comp.formula_weight 90.121 _chem_comp.id DXE _chem_comp.mon_nstd_flag . _chem_comp.name 1,2-DIMETHOXYETHANE _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C4 O2 DXE sing 156 n n C4 H41 DXE sing 157 n n C4 H42 DXE sing 158 n n C4 H43 DXE sing 159 n n O2 C3 DXE sing 160 n n C3 C2 DXE sing 161 n n C3 H31 DXE sing 162 n n C3 H32 DXE sing 163 n n C2 O1 DXE sing 164 n n C2 H21 DXE sing 165 n n C2 H22 DXE sing 166 n n O1 C1 DXE sing 167 n n C1 H11 DXE sing 168 n n C1 H12 DXE sing 169 n n C1 H13 DXE sing 170 n n # _atom_sites.entry_id 8CHA _atom_sites.fract_transf_matrix[1][1] 0.020028 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.013067 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.009235 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 FLC A 1 201 1 FLC FLC . D 4 PO4 A 1 202 1 PO4 PO4 . E 4 PO4 A 1 203 2 PO4 PO4 . F 4 PO4 A 1 204 3 PO4 PO4 . G 5 16P A 1 205 2 16P 2PE . H 6 PGE A 1 206 3 PGE PGE . I 7 DXE A 1 207 4 DXE PGE . J 8 FWN A 1 208 1 FWN PG4 . K 9 NA A 1 209 1 NA NA . L 10 HOH A 1 301 27 HOH HOH . L 10 HOH A 2 302 21 HOH HOH . L 10 HOH A 3 303 124 HOH HOH . L 10 HOH A 4 304 18 HOH HOH . L 10 HOH A 5 305 95 HOH HOH . L 10 HOH A 6 306 110 HOH HOH . L 10 HOH A 7 307 23 HOH HOH . L 10 HOH A 8 308 2 HOH HOH . L 10 HOH A 9 309 87 HOH HOH . L 10 HOH A 10 310 25 HOH HOH . L 10 HOH A 11 311 75 HOH HOH . L 10 HOH A 12 312 125 HOH HOH . L 10 HOH A 13 313 51 HOH HOH . L 10 HOH A 14 314 20 HOH HOH . L 10 HOH A 15 315 22 HOH HOH . L 10 HOH A 16 316 104 HOH HOH . L 10 HOH A 17 317 31 HOH HOH . L 10 HOH A 18 318 57 HOH HOH . L 10 HOH A 19 319 40 HOH HOH . L 10 HOH A 20 320 29 HOH HOH . L 10 HOH A 21 321 66 HOH HOH . L 10 HOH A 22 322 16 HOH HOH . L 10 HOH A 23 323 46 HOH HOH . L 10 HOH A 24 324 26 HOH HOH . L 10 HOH A 25 325 72 HOH HOH . L 10 HOH A 26 326 43 HOH HOH . L 10 HOH A 27 327 12 HOH HOH . L 10 HOH A 28 328 39 HOH HOH . L 10 HOH A 29 329 49 HOH HOH . L 10 HOH A 30 330 13 HOH HOH . L 10 HOH A 31 331 92 HOH HOH . L 10 HOH A 32 332 11 HOH HOH . L 10 HOH A 33 333 109 HOH HOH . L 10 HOH A 34 334 7 HOH HOH . L 10 HOH A 35 335 24 HOH HOH . L 10 HOH A 36 336 42 HOH HOH . L 10 HOH A 37 337 5 HOH HOH . L 10 HOH A 38 338 120 HOH HOH . L 10 HOH A 39 339 33 HOH HOH . L 10 HOH A 40 340 15 HOH HOH . L 10 HOH A 41 341 8 HOH HOH . L 10 HOH A 42 342 50 HOH HOH . L 10 HOH A 43 343 28 HOH HOH . L 10 HOH A 44 344 91 HOH HOH . L 10 HOH A 45 345 59 HOH HOH . L 10 HOH A 46 346 129 HOH HOH . L 10 HOH A 47 347 48 HOH HOH . L 10 HOH A 48 348 47 HOH HOH . L 10 HOH A 49 349 71 HOH HOH . L 10 HOH A 50 350 10 HOH HOH . L 10 HOH A 51 351 55 HOH HOH . L 10 HOH A 52 352 74 HOH HOH . L 10 HOH A 53 353 86 HOH HOH . L 10 HOH A 54 354 32 HOH HOH . L 10 HOH A 55 355 85 HOH HOH . L 10 HOH A 56 356 17 HOH HOH . L 10 HOH A 57 357 53 HOH HOH . L 10 HOH A 58 358 45 HOH HOH . L 10 HOH A 59 359 97 HOH HOH . L 10 HOH A 60 360 3 HOH HOH . L 10 HOH A 61 361 9 HOH HOH . L 10 HOH A 62 362 111 HOH HOH . L 10 HOH A 63 363 4 HOH HOH . L 10 HOH A 64 364 78 HOH HOH . L 10 HOH A 65 365 79 HOH HOH . L 10 HOH A 66 366 69 HOH HOH . L 10 HOH A 67 367 6 HOH HOH . L 10 HOH A 68 368 118 HOH HOH . L 10 HOH A 69 369 82 HOH HOH . L 10 HOH A 70 370 44 HOH HOH . L 10 HOH A 71 371 14 HOH HOH . L 10 HOH A 72 372 38 HOH HOH . L 10 HOH A 73 373 76 HOH HOH . L 10 HOH A 74 374 80 HOH HOH . L 10 HOH A 75 375 99 HOH HOH . L 10 HOH A 76 376 132 HOH HOH . L 10 HOH A 77 377 70 HOH HOH . L 10 HOH A 78 378 94 HOH HOH . L 10 HOH A 79 379 41 HOH HOH . L 10 HOH A 80 380 106 HOH HOH . L 10 HOH A 81 381 114 HOH HOH . L 10 HOH A 82 382 113 HOH HOH . L 10 HOH A 83 383 107 HOH HOH . L 10 HOH A 84 384 112 HOH HOH . L 10 HOH A 85 385 36 HOH HOH . L 10 HOH A 86 386 56 HOH HOH . L 10 HOH A 87 387 119 HOH HOH . L 10 HOH A 88 388 65 HOH HOH . L 10 HOH A 89 389 88 HOH HOH . L 10 HOH A 90 390 96 HOH HOH . L 10 HOH A 91 391 101 HOH HOH . L 10 HOH A 92 392 121 HOH HOH . L 10 HOH A 93 393 90 HOH HOH . L 10 HOH A 94 394 128 HOH HOH . L 10 HOH A 95 395 89 HOH HOH . L 10 HOH A 96 396 130 HOH HOH . L 10 HOH A 97 397 116 HOH HOH . L 10 HOH A 98 398 103 HOH HOH . L 10 HOH A 99 399 105 HOH HOH . L 10 HOH A 100 400 30 HOH HOH . L 10 HOH A 101 401 81 HOH HOH . L 10 HOH A 102 402 122 HOH HOH . L 10 HOH A 103 403 100 HOH HOH . L 10 HOH A 104 404 123 HOH HOH . L 10 HOH A 105 405 98 HOH HOH . L 10 HOH A 106 406 37 HOH HOH . L 10 HOH A 107 407 19 HOH HOH . L 10 HOH A 108 408 126 HOH HOH . L 10 HOH A 109 409 77 HOH HOH . L 10 HOH A 110 410 127 HOH HOH . L 10 HOH A 111 411 102 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 DXE . . . I 7 -14.628 -25.223 -7.179 1 44.61 ? C4 DXE 207 A 1 HETATM 2 O O2 DXE . . . I 7 -15.336 -23.989 -7.075 1 44.25 ? O2 DXE 207 A 1 HETATM 3 C C3 DXE . . . I 7 -15.174 -23.192 -8.245 1 39.36 ? C3 DXE 207 A 1 HETATM 4 C C2 DXE . . . I 7 -16.497 -22.533 -8.605 1 40.86 ? C2 DXE 207 A 1 HETATM 5 O O1 DXE . . . I 7 -16.572 -22.379 -10.02 1 51.11 ? O1 DXE 207 A 1 HETATM 6 C C1 DXE . . . I 7 -17.88 -22.654 -10.521 1 51.92 ? C1 DXE 207 A 1 HETATM 7 H H41 DXE . . . I 7 -13.554 -25.026 -7.192 1 53.68 ? H41 DXE 207 A 1 HETATM 8 H H42 DXE . . . I 7 -14.845 -25.842 -6.307 1 53.68 ? H42 DXE 207 A 1 HETATM 9 H H31 DXE . . . I 7 -14.416 -22.426 -8.068 1 47.39 ? H31 DXE 207 A 1 HETATM 10 H H32 DXE . . . I 7 -14.836 -23.819 -9.074 1 47.39 ? H32 DXE 207 A 1 HETATM 11 H H21 DXE . . . I 7 -17.326 -23.151 -8.255 1 49.18 ? H21 DXE 207 A 1 HETATM 12 H H22 DXE . . . I 7 -16.569 -21.557 -8.121 1 49.18 ? H22 DXE 207 A 1 HETATM 13 H H11 DXE . . . I 7 -18.585 -21.925 -10.118 1 62.46 ? H11 DXE 207 A 1 HETATM 14 H H12 DXE . . . I 7 -17.881 -22.557 -11.609 1 62.46 ? H12 DXE 207 A 1 # _model_server_stats.io_time_ms 15 _model_server_stats.parse_time_ms 70 _model_server_stats.create_model_time_ms 7 _model_server_stats.query_time_ms 298 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 14 #