data_8CI9 # _model_server_result.job_id MvU_42nXw5IlSqE4Xcd56w _model_server_result.datetime_utc '2024-11-27 04:57:48' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ci9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":404}' # _entry.id 8CI9 # _exptl.entry_id 8CI9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 122.143 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _entity.pdbx_number_of_molecules 3 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 105.85 _cell.angle_gamma 90 _cell.entry_id 8CI9 _cell.length_a 41.713 _cell.length_b 66.828 _cell.length_c 55.209 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CI9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 C N N ? 3 D N N ? 3 E N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 A NE2 HIS 184 C HIS 184 1_555 B FE FE . C FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.083 ? metalc ? metalc2 A OD1 ASP 186 C ASP 186 1_555 B FE FE . C FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.039 ? metalc ? metalc3 A NE2 HIS 239 C HIS 239 1_555 B FE FE . C FE 401 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.122 ? metalc ? metalc4 B FE FE . C FE 401 1_555 E O2 TRS . C TRS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.141 ? metalc ? metalc5 B FE FE . C FE 401 1_555 E N TRS . C TRS 404 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? metalc ? metalc6 B FE FE . C FE 401 1_555 F O HOH . C HOH 595 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.245 ? # _chem_comp.formula 'C4 H12 N O3 1' _chem_comp.formula_weight 122.143 _chem_comp.id TRS _chem_comp.mon_nstd_flag . _chem_comp.name 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 'TRIS BUFFER' # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C C1 TRS sing 334 n n C C2 TRS sing 335 n n C C3 TRS sing 336 n n C N TRS sing 337 n n C1 O1 TRS sing 338 n n C1 H11 TRS sing 339 n n C1 H12 TRS sing 340 n n C2 O2 TRS sing 341 n n C2 H21 TRS sing 342 n n C2 H22 TRS sing 343 n n C3 O3 TRS sing 344 n n C3 H31 TRS sing 345 n n C3 H32 TRS sing 346 n n N HN1 TRS sing 347 n n N HN2 TRS sing 348 n n N HN3 TRS sing 349 n n O1 HO1 TRS sing 350 n n O2 HO2 TRS sing 351 n n O3 HO3 TRS sing 352 n n # _atom_sites.entry_id 8CI9 _atom_sites.fract_transf_matrix[1][1] 0.023973 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.006807 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.014964 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018829 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FE C 1 401 401 FE FE . C 3 TRS C 1 402 402 TRS UNL . D 3 TRS C 1 403 403 TRS UNL . E 3 TRS C 1 404 404 TRS UNL . F 4 HOH C 1 501 281 HOH HOH . F 4 HOH C 2 502 94 HOH HOH . F 4 HOH C 3 503 279 HOH HOH . F 4 HOH C 4 504 197 HOH HOH . F 4 HOH C 5 505 277 HOH HOH . F 4 HOH C 6 506 65 HOH HOH . F 4 HOH C 7 507 188 HOH HOH . F 4 HOH C 8 508 61 HOH HOH . F 4 HOH C 9 509 2 HOH HOH . F 4 HOH C 10 510 165 HOH HOH . F 4 HOH C 11 511 68 HOH HOH . F 4 HOH C 12 512 115 HOH HOH . F 4 HOH C 13 513 90 HOH HOH . F 4 HOH C 14 514 15 HOH HOH . F 4 HOH C 15 515 1 HOH HOH . F 4 HOH C 16 516 218 HOH HOH . F 4 HOH C 17 517 6 HOH HOH . F 4 HOH C 18 518 134 HOH HOH . F 4 HOH C 19 519 122 HOH HOH . F 4 HOH C 20 520 39 HOH HOH . F 4 HOH C 21 521 56 HOH HOH . F 4 HOH C 22 522 145 HOH HOH . F 4 HOH C 23 523 207 HOH HOH . F 4 HOH C 24 524 85 HOH HOH . F 4 HOH C 25 525 59 HOH HOH . F 4 HOH C 26 526 16 HOH HOH . F 4 HOH C 27 527 146 HOH HOH . F 4 HOH C 28 528 57 HOH HOH . F 4 HOH C 29 529 121 HOH HOH . F 4 HOH C 30 530 102 HOH HOH . F 4 HOH C 31 531 117 HOH HOH . F 4 HOH C 32 532 62 HOH HOH . F 4 HOH C 33 533 72 HOH HOH . F 4 HOH C 34 534 116 HOH HOH . F 4 HOH C 35 535 40 HOH HOH . F 4 HOH C 36 536 53 HOH HOH . F 4 HOH C 37 537 108 HOH HOH . F 4 HOH C 38 538 91 HOH HOH . F 4 HOH C 39 539 95 HOH HOH . F 4 HOH C 40 540 24 HOH HOH . F 4 HOH C 41 541 179 HOH HOH . F 4 HOH C 42 542 166 HOH HOH . F 4 HOH C 43 543 171 HOH HOH . F 4 HOH C 44 544 69 HOH HOH . F 4 HOH C 45 545 88 HOH HOH . F 4 HOH C 46 546 87 HOH HOH . F 4 HOH C 47 547 27 HOH HOH . F 4 HOH C 48 548 14 HOH HOH . F 4 HOH C 49 549 17 HOH HOH . F 4 HOH C 50 550 89 HOH HOH . F 4 HOH C 51 551 212 HOH HOH . F 4 HOH C 52 552 29 HOH HOH . F 4 HOH C 53 553 12 HOH HOH . F 4 HOH C 54 554 131 HOH HOH . F 4 HOH C 55 555 205 HOH HOH . F 4 HOH C 56 556 13 HOH HOH . F 4 HOH C 57 557 141 HOH HOH . F 4 HOH C 58 558 83 HOH HOH . F 4 HOH C 59 559 106 HOH HOH . F 4 HOH C 60 560 107 HOH HOH . F 4 HOH C 61 561 152 HOH HOH . F 4 HOH C 62 562 75 HOH HOH . F 4 HOH C 63 563 123 HOH HOH . F 4 HOH C 64 564 64 HOH HOH . F 4 HOH C 65 565 283 HOH HOH . F 4 HOH C 66 566 10 HOH HOH . F 4 HOH C 67 567 50 HOH HOH . F 4 HOH C 68 568 128 HOH HOH . F 4 HOH C 69 569 272 HOH HOH . F 4 HOH C 70 570 78 HOH HOH . F 4 HOH C 71 571 46 HOH HOH . F 4 HOH C 72 572 60 HOH HOH . F 4 HOH C 73 573 8 HOH HOH . F 4 HOH C 74 574 172 HOH HOH . F 4 HOH C 75 575 151 HOH HOH . F 4 HOH C 76 576 47 HOH HOH . F 4 HOH C 77 577 4 HOH HOH . F 4 HOH C 78 578 76 HOH HOH . F 4 HOH C 79 579 96 HOH HOH . F 4 HOH C 80 580 81 HOH HOH . F 4 HOH C 81 581 73 HOH HOH . F 4 HOH C 82 582 3 HOH HOH . F 4 HOH C 83 583 18 HOH HOH . F 4 HOH C 84 584 84 HOH HOH . F 4 HOH C 85 585 79 HOH HOH . F 4 HOH C 86 586 140 HOH HOH . F 4 HOH C 87 587 118 HOH HOH . F 4 HOH C 88 588 51 HOH HOH . F 4 HOH C 89 589 169 HOH HOH . F 4 HOH C 90 590 270 HOH HOH . F 4 HOH C 91 591 54 HOH HOH . F 4 HOH C 92 592 124 HOH HOH . F 4 HOH C 93 593 125 HOH HOH . F 4 HOH C 94 594 271 HOH HOH . F 4 HOH C 95 595 286 HOH HOH . F 4 HOH C 96 596 44 HOH HOH . F 4 HOH C 97 597 99 HOH HOH . F 4 HOH C 98 598 67 HOH HOH . F 4 HOH C 99 599 52 HOH HOH . F 4 HOH C 100 600 36 HOH HOH . F 4 HOH C 101 601 49 HOH HOH . F 4 HOH C 102 602 37 HOH HOH . F 4 HOH C 103 603 19 HOH HOH . F 4 HOH C 104 604 162 HOH HOH . F 4 HOH C 105 605 82 HOH HOH . F 4 HOH C 106 606 9 HOH HOH . F 4 HOH C 107 607 252 HOH HOH . F 4 HOH C 108 608 223 HOH HOH . F 4 HOH C 109 609 71 HOH HOH . F 4 HOH C 110 610 204 HOH HOH . F 4 HOH C 111 611 32 HOH HOH . F 4 HOH C 112 612 154 HOH HOH . F 4 HOH C 113 613 35 HOH HOH . F 4 HOH C 114 614 268 HOH HOH . F 4 HOH C 115 615 168 HOH HOH . F 4 HOH C 116 616 5 HOH HOH . F 4 HOH C 117 617 235 HOH HOH . F 4 HOH C 118 618 45 HOH HOH . F 4 HOH C 119 619 144 HOH HOH . F 4 HOH C 120 620 269 HOH HOH . F 4 HOH C 121 621 41 HOH HOH . F 4 HOH C 122 622 155 HOH HOH . F 4 HOH C 123 623 138 HOH HOH . F 4 HOH C 124 624 48 HOH HOH . F 4 HOH C 125 625 153 HOH HOH . F 4 HOH C 126 626 77 HOH HOH . F 4 HOH C 127 627 120 HOH HOH . F 4 HOH C 128 628 11 HOH HOH . F 4 HOH C 129 629 284 HOH HOH . F 4 HOH C 130 630 139 HOH HOH . F 4 HOH C 131 631 156 HOH HOH . F 4 HOH C 132 632 43 HOH HOH . F 4 HOH C 133 633 285 HOH HOH . F 4 HOH C 134 634 58 HOH HOH . F 4 HOH C 135 635 142 HOH HOH . F 4 HOH C 136 636 42 HOH HOH . F 4 HOH C 137 637 127 HOH HOH . F 4 HOH C 138 638 63 HOH HOH . F 4 HOH C 139 639 247 HOH HOH . F 4 HOH C 140 640 180 HOH HOH . F 4 HOH C 141 641 34 HOH HOH . F 4 HOH C 142 642 74 HOH HOH . F 4 HOH C 143 643 129 HOH HOH . F 4 HOH C 144 644 192 HOH HOH . F 4 HOH C 145 645 30 HOH HOH . F 4 HOH C 146 646 31 HOH HOH . F 4 HOH C 147 647 276 HOH HOH . F 4 HOH C 148 648 187 HOH HOH . F 4 HOH C 149 649 20 HOH HOH . F 4 HOH C 150 650 181 HOH HOH . F 4 HOH C 151 651 177 HOH HOH . F 4 HOH C 152 652 7 HOH HOH . F 4 HOH C 153 653 28 HOH HOH . F 4 HOH C 154 654 202 HOH HOH . F 4 HOH C 155 655 55 HOH HOH . F 4 HOH C 156 656 258 HOH HOH . F 4 HOH C 157 657 257 HOH HOH . F 4 HOH C 158 658 130 HOH HOH . F 4 HOH C 159 659 97 HOH HOH . F 4 HOH C 160 660 98 HOH HOH . F 4 HOH C 161 661 23 HOH HOH . F 4 HOH C 162 662 25 HOH HOH . F 4 HOH C 163 663 164 HOH HOH . F 4 HOH C 164 664 86 HOH HOH . F 4 HOH C 165 665 273 HOH HOH . F 4 HOH C 166 666 274 HOH HOH . F 4 HOH C 167 667 219 HOH HOH . F 4 HOH C 168 668 38 HOH HOH . F 4 HOH C 169 669 278 HOH HOH . F 4 HOH C 170 670 149 HOH HOH . F 4 HOH C 171 671 282 HOH HOH . F 4 HOH C 172 672 80 HOH HOH . F 4 HOH C 173 673 254 HOH HOH . F 4 HOH C 174 674 280 HOH HOH . F 4 HOH C 175 675 266 HOH HOH . F 4 HOH C 176 676 275 HOH HOH . F 4 HOH C 177 677 22 HOH HOH . F 4 HOH C 178 678 248 HOH HOH . F 4 HOH C 179 679 148 HOH HOH . F 4 HOH C 180 680 245 HOH HOH . F 4 HOH C 181 681 119 HOH HOH . F 4 HOH C 182 682 250 HOH HOH . F 4 HOH C 183 683 265 HOH HOH . F 4 HOH C 184 684 100 HOH HOH . F 4 HOH C 185 685 267 HOH HOH . F 4 HOH C 186 686 193 HOH HOH . F 4 HOH C 187 687 198 HOH HOH . F 4 HOH C 188 688 253 HOH HOH . F 4 HOH C 189 689 137 HOH HOH . F 4 HOH C 190 690 101 HOH HOH . F 4 HOH C 191 691 249 HOH HOH . F 4 HOH C 192 692 132 HOH HOH . F 4 HOH C 193 693 260 HOH HOH . F 4 HOH C 194 694 238 HOH HOH . F 4 HOH C 195 695 113 HOH HOH . F 4 HOH C 196 696 92 HOH HOH . F 4 HOH C 197 697 229 HOH HOH . F 4 HOH C 198 698 126 HOH HOH . F 4 HOH C 199 699 136 HOH HOH . F 4 HOH C 200 700 195 HOH HOH . F 4 HOH C 201 701 206 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C TRS . . . E 3 3.278 -0.849 21.324 1 27.91 ? C TRS 404 C 1 HETATM 2 C C1 TRS . . . E 3 4.281 -1.965 21.615 1 30.24 ? C1 TRS 404 C 1 HETATM 3 C C2 TRS . . . E 3 3.192 -0.604 19.819 1 26.94 ? C2 TRS 404 C 1 HETATM 4 C C3 TRS . . . E 3 1.875 -1.16 21.83 1 29.3 ? C3 TRS 404 C 1 HETATM 5 N N TRS . . . E 3 3.669 0.371 22.087 1 27.04 ? N TRS 404 C 1 HETATM 6 O O1 TRS . . . E 3 5.605 -1.458 21.595 1 29.98 ? O1 TRS 404 C 1 HETATM 7 O O2 TRS . . . E 3 2.735 0.725 19.607 1 22.06 ? O2 TRS 404 C 1 HETATM 8 O O3 TRS . . . E 3 1.813 -0.924 23.226 1 31.74 ? O3 TRS 404 C 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 266 _model_server_stats.encode_time_ms 17 _model_server_stats.element_count 8 #