data_8CIK # _model_server_result.job_id rdvGNBBlpkYxmccSIh9kcQ _model_server_result.datetime_utc '2025-07-02 06:46:11' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cik # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":401}' # _entry.id 8CIK # _exptl.entry_id 8CIK _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 98.31 _cell.angle_gamma 90 _cell.entry_id 8CIK _cell.length_a 142.39 _cell.length_b 41.63 _cell.length_c 54.55 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CIK _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall 'C 2y' _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 47 A CYS 47 1_555 A SG CYS 52 A CYS 52 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf2 A SG CYS 207 A CYS 207 1_555 A SG CYS 211 A CYS 211 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf3 A SG CYS 250 A CYS 250 1_555 A SG CYS 283 A CYS 283 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8CIK _atom_sites.fract_transf_matrix[1][1] 0.007023 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001026 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.024021 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.018526 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 GOL A 1 401 401 GOL GOL . C 3 HOH A 1 501 140 HOH HOH . C 3 HOH A 2 502 117 HOH HOH . C 3 HOH A 3 503 34 HOH HOH . C 3 HOH A 4 504 2 HOH HOH . C 3 HOH A 5 505 104 HOH HOH . C 3 HOH A 6 506 41 HOH HOH . C 3 HOH A 7 507 47 HOH HOH . C 3 HOH A 8 508 107 HOH HOH . C 3 HOH A 9 509 97 HOH HOH . C 3 HOH A 10 510 120 HOH HOH . C 3 HOH A 11 511 81 HOH HOH . C 3 HOH A 12 512 79 HOH HOH . C 3 HOH A 13 513 101 HOH HOH . C 3 HOH A 14 514 129 HOH HOH . C 3 HOH A 15 515 51 HOH HOH . C 3 HOH A 16 516 119 HOH HOH . C 3 HOH A 17 517 74 HOH HOH . C 3 HOH A 18 518 75 HOH HOH . C 3 HOH A 19 519 61 HOH HOH . C 3 HOH A 20 520 77 HOH HOH . C 3 HOH A 21 521 55 HOH HOH . C 3 HOH A 22 522 56 HOH HOH . C 3 HOH A 23 523 84 HOH HOH . C 3 HOH A 24 524 134 HOH HOH . C 3 HOH A 25 525 68 HOH HOH . C 3 HOH A 26 526 132 HOH HOH . C 3 HOH A 27 527 105 HOH HOH . C 3 HOH A 28 528 108 HOH HOH . C 3 HOH A 29 529 4 HOH HOH . C 3 HOH A 30 530 123 HOH HOH . C 3 HOH A 31 531 66 HOH HOH . C 3 HOH A 32 532 110 HOH HOH . C 3 HOH A 33 533 14 HOH HOH . C 3 HOH A 34 534 60 HOH HOH . C 3 HOH A 35 535 103 HOH HOH . C 3 HOH A 36 536 63 HOH HOH . C 3 HOH A 37 537 54 HOH HOH . C 3 HOH A 38 538 49 HOH HOH . C 3 HOH A 39 539 53 HOH HOH . C 3 HOH A 40 540 113 HOH HOH . C 3 HOH A 41 541 48 HOH HOH . C 3 HOH A 42 542 91 HOH HOH . C 3 HOH A 43 543 99 HOH HOH . C 3 HOH A 44 544 135 HOH HOH . C 3 HOH A 45 545 71 HOH HOH . C 3 HOH A 46 546 67 HOH HOH . C 3 HOH A 47 547 11 HOH HOH . C 3 HOH A 48 548 43 HOH HOH . C 3 HOH A 49 549 96 HOH HOH . C 3 HOH A 50 550 70 HOH HOH . C 3 HOH A 51 551 15 HOH HOH . C 3 HOH A 52 552 118 HOH HOH . C 3 HOH A 53 553 111 HOH HOH . C 3 HOH A 54 554 121 HOH HOH . C 3 HOH A 55 555 3 HOH HOH . C 3 HOH A 56 556 98 HOH HOH . C 3 HOH A 57 557 69 HOH HOH . C 3 HOH A 58 558 116 HOH HOH . C 3 HOH A 59 559 62 HOH HOH . C 3 HOH A 60 560 10 HOH HOH . C 3 HOH A 61 561 13 HOH HOH . C 3 HOH A 62 562 109 HOH HOH . C 3 HOH A 63 563 46 HOH HOH . C 3 HOH A 64 564 38 HOH HOH . C 3 HOH A 65 565 131 HOH HOH . C 3 HOH A 66 566 16 HOH HOH . C 3 HOH A 67 567 114 HOH HOH . C 3 HOH A 68 568 80 HOH HOH . C 3 HOH A 69 569 85 HOH HOH . C 3 HOH A 70 570 100 HOH HOH . C 3 HOH A 71 571 1 HOH HOH . C 3 HOH A 72 572 112 HOH HOH . C 3 HOH A 73 573 93 HOH HOH . C 3 HOH A 74 574 139 HOH HOH . C 3 HOH A 75 575 64 HOH HOH . C 3 HOH A 76 576 78 HOH HOH . C 3 HOH A 77 577 82 HOH HOH . C 3 HOH A 78 578 127 HOH HOH . C 3 HOH A 79 579 128 HOH HOH . C 3 HOH A 80 580 122 HOH HOH . C 3 HOH A 81 581 133 HOH HOH . C 3 HOH A 82 582 95 HOH HOH . C 3 HOH A 83 583 90 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . B 2 59.317 39.55 21.722 1 85.39 ? C1 GOL 401 A 1 HETATM 2 O O1 GOL . . . B 2 59.944 40.011 22.88 1 76.57 ? O1 GOL 401 A 1 HETATM 3 C C2 GOL . . . B 2 60.19 38.4 21.165 1 75.58 ? C2 GOL 401 A 1 HETATM 4 O O2 GOL . . . B 2 59.602 37.783 20.067 1 66.01 ? O2 GOL 401 A 1 HETATM 5 C C3 GOL . . . B 2 60.377 37.433 22.359 1 65.1 ? C3 GOL 401 A 1 HETATM 6 O O3 GOL . . . B 2 61.111 36.344 21.889 1 57.74 ? O3 GOL 401 A 1 # _model_server_stats.io_time_ms 103 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 309 _model_server_stats.encode_time_ms 3 _model_server_stats.element_count 6 #