data_8CJ8 # _model_server_result.job_id mNh0YqUrdAXUUVHPbDyKUw _model_server_result.datetime_utc '2024-11-28 18:37:17' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cj8 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"L","auth_seq_id":1002}' # _entry.id 8CJ8 # _exptl.entry_id 8CJ8 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 134.087 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description '(2S)-2-hydroxybutanedioic acid' _entity.pdbx_number_of_molecules 6 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CJ8 _cell.length_a 245.38 _cell.length_b 245.38 _cell.length_c 397.73 _cell.Z_PDB 48 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CJ8 _symmetry.cell_setting ? _symmetry.Int_Tables_number 98 _symmetry.space_group_name_Hall 'I 4bw 2bw' _symmetry.space_group_name_H-M 'I 41 2 2' # loop_ _pdbx_struct_assembly.method_details _pdbx_struct_assembly.oligomeric_details _pdbx_struct_assembly.oligomeric_count _pdbx_struct_assembly.details _pdbx_struct_assembly.id ? tetrameric 4 author_defined_assembly 1 ? tetrameric 4 author_defined_assembly 2 # loop_ _pdbx_struct_assembly_gen.asym_id_list _pdbx_struct_assembly_gen.assembly_id _pdbx_struct_assembly_gen.oper_expression A,B,D,E,F,G,H,I,J,N,O 1 1 A,B,D,E,F,G,H,I,J,N,O 1 3 C,K,L,M 2 1 C,K,L,M 2 2 C,K,L,M 2 3 C,K,L,M 2 4 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 8_666 -y+1,-x+1,-z+1 0 -1 0 -1 0 0 0 0 -1 245.38 245.38 397.73 3 'crystal symmetry operation' 10_665 -x+1,-y+1,z -1 0 0 0 -1 0 0 0 1 245.38 245.38 0 4 'crystal symmetry operation' 15_556 y,x,-z+1 0 1 0 1 0 0 0 0 -1 0 0 397.73 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 2 D N N ? 2 E N N ? 2 H N N ? 2 I N N ? 2 K N N ? 2 L N N # _chem_comp.formula 'C4 H6 O5' _chem_comp.formula_weight 134.087 _chem_comp.id LMR _chem_comp.mon_nstd_flag . _chem_comp.name '(2S)-2-hydroxybutanedioic acid' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms L-Malate # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1A LMR doub 194 n n C1 O1B LMR sing 195 n n C1 C2 LMR sing 196 n n C2 O2 LMR sing 197 n n C2 C3 LMR sing 198 n n C3 C4 LMR sing 199 n n C4 O4A LMR sing 200 n n C4 O4B LMR doub 201 n n C2 H2 LMR sing 202 n n O2 HO2 LMR sing 203 n n C3 H3 LMR sing 204 n n C3 H3A LMR sing 205 n n O1B H4 LMR sing 206 n n O4A H5 LMR sing 207 n n # _atom_sites.entry_id 8CJ8 _atom_sites.fract_transf_matrix[1][1] 0.004075 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.004075 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.002514 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 2 LMR A 1 1001 1 LMR LMR . E 2 LMR A 1 1002 2 LMR LMR . F 3 CL A 1 1003 7 CL CL . G 3 CL A 1 1004 8 CL CL . H 2 LMR B 1 1001 3 LMR LMR . I 2 LMR B 1 1002 4 LMR LMR . J 3 CL B 1 1003 10 CL CL . K 2 LMR C 1 1001 5 LMR LMR . L 2 LMR C 1 1002 6 LMR LMR . M 3 CL C 1 1003 9 CL CL . N 4 HOH A 1 1101 14 HOH HOH . N 4 HOH A 2 1102 15 HOH HOH . N 4 HOH A 3 1103 13 HOH HOH . N 4 HOH A 4 1104 12 HOH HOH . N 4 HOH A 5 1105 16 HOH HOH . N 4 HOH A 6 1106 11 HOH HOH . O 4 HOH B 1 1101 17 HOH HOH . O 4 HOH B 2 1102 18 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 LMR . . . L 2 156.293 168.38 218.231 1 130.41 ? C1 LMR 1002 C 1 HETATM 2 O O1A LMR . . . L 2 155.489 167.886 217.418 1 130.27 ? O1A LMR 1002 C 1 HETATM 3 O O1B LMR . . . L 2 157.467 168.617 217.861 1 126.39 ? O1B LMR 1002 C 1 HETATM 4 C C2 LMR . . . L 2 155.83 168.673 219.592 1 139.42 ? C2 LMR 1002 C 1 HETATM 5 O O2 LMR . . . L 2 154.654 169.49 219.451 1 127.79 ? O2 LMR 1002 C 1 HETATM 6 C C3 LMR . . . L 2 155.478 167.352 220.278 1 137.58 ? C3 LMR 1002 C 1 HETATM 7 C C4 LMR . . . L 2 155.065 167.552 221.725 1 129.76 ? C4 LMR 1002 C 1 HETATM 8 O O4A LMR . . . L 2 155.558 168.489 222.419 1 120.48 ? O4A LMR 1002 C 1 HETATM 9 O O4B LMR . . . L 2 154.209 166.752 222.236 1 130.5 ? O4B LMR 1002 C 1 # _model_server_stats.io_time_ms 60 _model_server_stats.parse_time_ms 15 _model_server_stats.create_model_time_ms 34 _model_server_stats.query_time_ms 241 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 9 #