data_8CJM
#
_model_server_result.job_id            URmzIerff2Y1p0brtmG5PQ 
_model_server_result.datetime_utc      '2025-07-27 13:01:12' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8cjm 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"C","auth_seq_id":502}' 
#
_entry.id    8CJM 
#
_exptl.entry_id    8CJM 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              382.459 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            7-(cyclobutylmethyl)-3-ethyl-8-(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-2-ylmethyl)purine-2,6-dione 
_entity.pdbx_number_of_molecules    1 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          96.77 
_cell.angle_gamma         90 
_cell.entry_id            8CJM 
_cell.length_a            46.7 
_cell.length_b            57.37 
_cell.length_c            54.93 
_cell.Z_PDB               2 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CJM 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        4 
_symmetry.space_group_name_Hall    'P 2yb' 
_symmetry.space_group_name_H-M     'P 1 21 1' 
#
_pdbx_struct_assembly.method_details        PISA 
_pdbx_struct_assembly.oligomeric_details    monomeric 
_pdbx_struct_assembly.oligomeric_count      1 
_pdbx_struct_assembly.details               author_and_software_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
_struct_asym.details                        ? 
_struct_asym.entity_id                      3 
_struct_asym.id                             C 
_struct_asym.pdbx_modified                  N 
_struct_asym.pdbx_blank_PDB_chainid_flag    N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
metalc ? metalc1 A NE2 HIS 197 A HIS 272 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.065 ? 
metalc ? metalc2 A NE2 HIS 202 A HIS 277 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.007 ? 
metalc ? metalc3 A OE1 GLU 242 A GLU 317 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.357 ? 
metalc ? metalc4 A OE2 GLU 242 A GLU 317 1_555 B FE FE . A FE 501 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.47 ? 
metalc ? metalc5 B FE FE . A FE 501 1_555 C NAO UXL . A UXL 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.058 ? 
metalc ? metalc6 B FE FE . A FE 501 1_555 D O HOH . A HOH 610 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.249 ? 
#
_chem_comp.formula           'C20 H26 N6 O2' 
_chem_comp.formula_weight    382.459 
_chem_comp.id                UXL 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              7-(cyclobutylmethyl)-3-ethyl-8-(5,6,7,8-tetrahydroimidazo[1,2-a]pyridin-2-ylmethyl)purine-2,6-dione 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
CAF CAL UXL sing 358 n n 
CAF CAE UXL sing 359 n n 
CAL NAZ UXL sing 360 n n 
O2 C2 UXL doub 361 n n 
CAE CAI UXL sing 362 n n 
CAH N3 UXL sing 363 n n 
CAH CAA UXL sing 364 n n 
NAZ CAD UXL sing 365 n y 
NAZ CAS UXL sing 366 n y 
C2 N3 UXL sing 367 n n 
C2 N1 UXL sing 368 n n 
N3 C4 UXL sing 369 n n 
N1 C6 UXL sing 370 n n 
CAD CAR UXL doub 371 n y 
CAI CAS UXL sing 372 n n 
CAS NAO UXL doub 373 n y 
C4 N9 UXL sing 374 n y 
C4 C5 UXL doub 375 n y 
CAJ CAG UXL sing 376 n n 
CAJ CAY UXL sing 377 n n 
C6 C5 UXL sing 378 n n 
C6 O6 UXL doub 379 n n 
N9 C8 UXL doub 380 n y 
C5 N7 UXL sing 381 n y 
CAG CAK UXL sing 382 n n 
CAR NAO UXL sing 383 n y 
CAR CAM UXL sing 384 n n 
C8 N7 UXL sing 385 n y 
C8 CAM UXL sing 386 n n 
N7 CAN UXL sing 387 n n 
CAY CAK UXL sing 388 n n 
CAY CAN UXL sing 389 n n 
N1 H1 UXL sing 390 n n 
CAA H2 UXL sing 391 n n 
CAA H3 UXL sing 392 n n 
CAA H4 UXL sing 393 n n 
CAD H5 UXL sing 394 n n 
CAE H6 UXL sing 395 n n 
CAE H7 UXL sing 396 n n 
CAF H8 UXL sing 397 n n 
CAF H9 UXL sing 398 n n 
CAG H10 UXL sing 399 n n 
CAG H11 UXL sing 400 n n 
CAH H12 UXL sing 401 n n 
CAH H13 UXL sing 402 n n 
CAI H14 UXL sing 403 n n 
CAI H15 UXL sing 404 n n 
CAJ H16 UXL sing 405 n n 
CAJ H17 UXL sing 406 n n 
CAK H18 UXL sing 407 n n 
CAK H19 UXL sing 408 n n 
CAL H20 UXL sing 409 n n 
CAL H21 UXL sing 410 n n 
CAM H22 UXL sing 411 n n 
CAM H23 UXL sing 412 n n 
CAN H24 UXL sing 413 n n 
CAN H25 UXL sing 414 n n 
CAY H26 UXL sing 415 n n 
#
_atom_sites.entry_id                     8CJM 
_atom_sites.fract_transf_matrix[1][1]    0.021413 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0.002542 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.017431 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.018333 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
B 2 FE A 1 501 1 FE FE . 
C 3 UXL A 1 502 1 UXL DRG . 
D 4 HOH A 1 601 96 HOH HOH . 
D 4 HOH A 2 602 66 HOH HOH . 
D 4 HOH A 3 603 23 HOH HOH . 
D 4 HOH A 4 604 52 HOH HOH . 
D 4 HOH A 5 605 80 HOH HOH . 
D 4 HOH A 6 606 84 HOH HOH . 
D 4 HOH A 7 607 120 HOH HOH . 
D 4 HOH A 8 608 1 HOH HOH . 
D 4 HOH A 9 609 33 HOH HOH . 
D 4 HOH A 10 610 68 HOH HOH . 
D 4 HOH A 11 611 7 HOH HOH . 
D 4 HOH A 12 612 14 HOH HOH . 
D 4 HOH A 13 613 89 HOH HOH . 
D 4 HOH A 14 614 88 HOH HOH . 
D 4 HOH A 15 615 21 HOH HOH . 
D 4 HOH A 16 616 32 HOH HOH . 
D 4 HOH A 17 617 63 HOH HOH . 
D 4 HOH A 18 618 29 HOH HOH . 
D 4 HOH A 19 619 105 HOH HOH . 
D 4 HOH A 20 620 116 HOH HOH . 
D 4 HOH A 21 621 53 HOH HOH . 
D 4 HOH A 22 622 34 HOH HOH . 
D 4 HOH A 23 623 9 HOH HOH . 
D 4 HOH A 24 624 24 HOH HOH . 
D 4 HOH A 25 625 48 HOH HOH . 
D 4 HOH A 26 626 79 HOH HOH . 
D 4 HOH A 27 627 28 HOH HOH . 
D 4 HOH A 28 628 111 HOH HOH . 
D 4 HOH A 29 629 43 HOH HOH . 
D 4 HOH A 30 630 58 HOH HOH . 
D 4 HOH A 31 631 92 HOH HOH . 
D 4 HOH A 32 632 91 HOH HOH . 
D 4 HOH A 33 633 59 HOH HOH . 
D 4 HOH A 34 634 76 HOH HOH . 
D 4 HOH A 35 635 77 HOH HOH . 
D 4 HOH A 36 636 5 HOH HOH . 
D 4 HOH A 37 637 15 HOH HOH . 
D 4 HOH A 38 638 38 HOH HOH . 
D 4 HOH A 39 639 65 HOH HOH . 
D 4 HOH A 40 640 61 HOH HOH . 
D 4 HOH A 41 641 103 HOH HOH . 
D 4 HOH A 42 642 107 HOH HOH . 
D 4 HOH A 43 643 50 HOH HOH . 
D 4 HOH A 44 644 110 HOH HOH . 
D 4 HOH A 45 645 25 HOH HOH . 
D 4 HOH A 46 646 69 HOH HOH . 
D 4 HOH A 47 647 75 HOH HOH . 
D 4 HOH A 48 648 8 HOH HOH . 
D 4 HOH A 49 649 60 HOH HOH . 
D 4 HOH A 50 650 106 HOH HOH . 
D 4 HOH A 51 651 16 HOH HOH . 
D 4 HOH A 52 652 57 HOH HOH . 
D 4 HOH A 53 653 108 HOH HOH . 
D 4 HOH A 54 654 49 HOH HOH . 
D 4 HOH A 55 655 35 HOH HOH . 
D 4 HOH A 56 656 6 HOH HOH . 
D 4 HOH A 57 657 12 HOH HOH . 
D 4 HOH A 58 658 51 HOH HOH . 
D 4 HOH A 59 659 17 HOH HOH . 
D 4 HOH A 60 660 36 HOH HOH . 
D 4 HOH A 61 661 39 HOH HOH . 
D 4 HOH A 62 662 2 HOH HOH . 
D 4 HOH A 63 663 47 HOH HOH . 
D 4 HOH A 64 664 3 HOH HOH . 
D 4 HOH A 65 665 86 HOH HOH . 
D 4 HOH A 66 666 27 HOH HOH . 
D 4 HOH A 67 667 13 HOH HOH . 
D 4 HOH A 68 668 31 HOH HOH . 
D 4 HOH A 69 669 113 HOH HOH . 
D 4 HOH A 70 670 30 HOH HOH . 
D 4 HOH A 71 671 81 HOH HOH . 
D 4 HOH A 72 672 72 HOH HOH . 
D 4 HOH A 73 673 118 HOH HOH . 
D 4 HOH A 74 674 37 HOH HOH . 
D 4 HOH A 75 675 41 HOH HOH . 
D 4 HOH A 76 676 10 HOH HOH . 
D 4 HOH A 77 677 102 HOH HOH . 
D 4 HOH A 78 678 55 HOH HOH . 
D 4 HOH A 79 679 70 HOH HOH . 
D 4 HOH A 80 680 20 HOH HOH . 
D 4 HOH A 81 681 87 HOH HOH . 
D 4 HOH A 82 682 18 HOH HOH . 
D 4 HOH A 83 683 101 HOH HOH . 
D 4 HOH A 84 684 44 HOH HOH . 
D 4 HOH A 85 685 11 HOH HOH . 
D 4 HOH A 86 686 54 HOH HOH . 
D 4 HOH A 87 687 45 HOH HOH . 
D 4 HOH A 88 688 22 HOH HOH . 
D 4 HOH A 89 689 64 HOH HOH . 
D 4 HOH A 90 690 94 HOH HOH . 
D 4 HOH A 91 691 42 HOH HOH . 
D 4 HOH A 92 692 115 HOH HOH . 
D 4 HOH A 93 693 4 HOH HOH . 
D 4 HOH A 94 694 95 HOH HOH . 
D 4 HOH A 95 695 83 HOH HOH . 
D 4 HOH A 96 696 19 HOH HOH . 
D 4 HOH A 97 697 67 HOH HOH . 
D 4 HOH A 98 698 40 HOH HOH . 
D 4 HOH A 99 699 26 HOH HOH . 
D 4 HOH A 100 700 74 HOH HOH . 
D 4 HOH A 101 701 98 HOH HOH . 
D 4 HOH A 102 702 104 HOH HOH . 
D 4 HOH A 103 703 56 HOH HOH . 
D 4 HOH A 104 704 62 HOH HOH . 
D 4 HOH A 105 705 93 HOH HOH . 
D 4 HOH A 106 706 109 HOH HOH . 
D 4 HOH A 107 707 119 HOH HOH . 
D 4 HOH A 108 708 99 HOH HOH . 
D 4 HOH A 109 709 90 HOH HOH . 
D 4 HOH A 110 710 46 HOH HOH . 
D 4 HOH A 111 711 97 HOH HOH . 
D 4 HOH A 112 712 117 HOH HOH . 
D 4 HOH A 113 713 100 HOH HOH . 
D 4 HOH A 114 714 114 HOH HOH . 
D 4 HOH A 115 715 82 HOH HOH . 
D 4 HOH A 116 716 85 HOH HOH . 
D 4 HOH A 117 717 71 HOH HOH . 
D 4 HOH A 118 718 78 HOH HOH . 
D 4 HOH A 119 719 73 HOH HOH . 
D 4 HOH A 120 720 112 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 C C4 UXL . . . C 3 -3.879 -9.875 -17.557 1 39.8 ? C4 UXL 502 A 1 
HETATM 2 C C5 UXL . . . C 3 -3.207 -8.827 -17.054 1 38.54 ? C5 UXL 502 A 1 
HETATM 3 C C6 UXL . . . C 3 -1.9 -8.694 -17.332 1 38.87 ? C6 UXL 502 A 1 
HETATM 4 C C8 UXL . . . C 3 -5.252 -8.719 -16.406 1 38.74 ? C8 UXL 502 A 1 
HETATM 5 N N1 UXL . . . C 3 -1.253 -9.631 -18.139 1 37.09 ? N1 UXL 502 A 1 
HETATM 6 N N3 UXL . . . C 3 -3.285 -10.79 -18.335 1 38.57 ? N3 UXL 502 A 1 
HETATM 7 C C2 UXL . . . C 3 -1.988 -10.697 -18.637 1 38.14 ? C2 UXL 502 A 1 
HETATM 8 C CAA UXL . . . C 3 -3.95 -13.121 -17.903 1 33.05 ? CAA UXL 502 A 1 
HETATM 9 C CAD UXL . . . C 3 -7.509 -7.967 -18.126 1 38.16 ? CAD UXL 502 A 1 
HETATM 10 C CAE UXL . . . C 3 -11.26 -6.878 -19.293 1 39.1 ? CAE UXL 502 A 1 
HETATM 11 C CAF UXL . . . C 3 -10.561 -7.742 -20.313 1 43.01 ? CAF UXL 502 A 1 
HETATM 12 C CAG UXL . . . C 3 -4.399 -3.782 -17.035 1 48.57 ? CAG UXL 502 A 1 
HETATM 13 C CAH UXL . . . C 3 -4.07 -11.928 -18.858 1 38.72 ? CAH UXL 502 A 1 
HETATM 14 C CAI UXL . . . C 3 -10.982 -7.47 -17.91 1 36.51 ? CAI UXL 502 A 1 
HETATM 15 C CAJ UXL . . . C 3 -4.368 -5.252 -17.485 1 47.15 ? CAJ UXL 502 A 1 
HETATM 16 C CAK UXL . . . C 3 -3.585 -4.308 -15.847 1 44.53 ? CAK UXL 502 A 1 
HETATM 17 C CAL UXL . . . C 3 -9.067 -7.576 -20.088 1 35.75 ? CAL UXL 502 A 1 
HETATM 18 C CAM UXL . . . C 3 -6.574 -8.296 -15.75 1 36.15 ? CAM UXL 502 A 1 
HETATM 19 C CAN UXL . . . C 3 -3.717 -6.813 -15.574 1 37.76 ? CAN UXL 502 A 1 
HETATM 20 C CAR UXL . . . C 3 -7.674 -8.05 -16.808 1 33.34 ? CAR UXL 502 A 1 
HETATM 21 C CAS UXL . . . C 3 -9.615 -7.684 -17.663 1 34.84 ? CAS UXL 502 A 1 
HETATM 22 C CAY UXL . . . C 3 -4.477 -5.543 -16.002 1 46.31 ? CAY UXL 502 A 1 
HETATM 23 N N7 UXL . . . C 3 -4.071 -8.089 -16.334 1 43.64 ? N7 UXL 502 A 1 
HETATM 24 N N9 UXL . . . C 3 -5.141 -9.804 -17.152 1 40.58 ? N9 UXL 502 A 1 
HETATM 25 N NAO UXL . . . C 3 -8.958 -7.876 -16.516 1 32.5 ? NAO UXL 502 A 1 
HETATM 26 N NAZ UXL . . . C 3 -8.724 -7.748 -18.657 1 40.02 ? NAZ UXL 502 A 1 
HETATM 27 O O2 UXL . . . C 3 -1.453 -11.544 -19.352 1 42.84 ? O2 UXL 502 A 1 
HETATM 28 O O6 UXL . . . C 3 -1.228 -7.754 -16.901 1 42.23 ? O6 UXL 502 A 1 
#
_model_server_stats.io_time_ms              19 
_model_server_stats.parse_time_ms           11 
_model_server_stats.create_model_time_ms    2 
_model_server_stats.query_time_ms           316 
_model_server_stats.encode_time_ms          2 
_model_server_stats.element_count           28 
#