data_8CK7 # _model_server_result.job_id ytxGjVUdIeruzjhJ6Kuscw _model_server_result.datetime_utc '2025-01-10 19:56:14' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ck7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":201}' # _entry.id 8CK7 # _exptl.entry_id 8CK7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 92.094 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description GLYCEROL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 120 _cell.entry_id 8CK7 _cell.length_a 108.91 _cell.length_b 108.91 _cell.length_c 43.35 _cell.Z_PDB 12 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CK7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 172 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 64' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details tetrameric _pdbx_struct_assembly.oligomeric_count 4 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2 # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1 0 0 0 1 0 0 0 1 0 0 0 2 'crystal symmetry operation' 4_455 -x-1,-y,z -1 0 0 0 -1 0 0 0 1 -108.91 0 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 4 A CYS 4 1_555 A SG CYS 83 A CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.001 ? disulf ? disulf2 B SG CYS 4 B CYS 4 1_555 B SG CYS 83 B CYS 83 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.069 ? covale ? covale1 A ND2 ASN 17 A ASN 17 1_555 D C1 NAG . A NAG 202 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.434 ? covale ? covale2 B ND2 ASN 17 B ASN 17 1_555 H C1 NAG . B NAG 201 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.412 ? # _chem_comp.formula 'C3 H8 O3' _chem_comp.formula_weight 92.094 _chem_comp.id GOL _chem_comp.mon_nstd_flag . _chem_comp.name GLYCEROL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms GLYCERIN;PROPANE-1,2,3-TRIOL # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 O1 GOL sing 129 n n C1 C2 GOL sing 130 n n C1 H11 GOL sing 131 n n C1 H12 GOL sing 132 n n O1 HO1 GOL sing 133 n n C2 O2 GOL sing 134 n n C2 C3 GOL sing 135 n n C2 H2 GOL sing 136 n n O2 HO2 GOL sing 137 n n C3 O3 GOL sing 138 n n C3 H31 GOL sing 139 n n C3 H32 GOL sing 140 n n O3 HO3 GOL sing 141 n n # _atom_sites.entry_id 8CK7 _atom_sites.fract_transf_matrix[1][1] 0.009182 _atom_sites.fract_transf_matrix[1][2] 0.005301 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010602 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.023068 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 GOL A 1 201 201 GOL GOL . D 3 NAG A 1 202 205 NAG NAG . E 4 TEP A 1 203 206 TEP TEP . F 5 SO4 A 1 204 1 SO4 SO4 . G 5 SO4 A 1 205 2 SO4 SO4 . H 3 NAG B 1 201 202 NAG NAG . I 4 TEP B 1 202 203 TEP TEP . J 6 HOH A 1 301 48 HOH HOH . J 6 HOH A 2 302 5 HOH HOH . J 6 HOH A 3 303 89 HOH HOH . J 6 HOH A 4 304 79 HOH HOH . J 6 HOH A 5 305 81 HOH HOH . J 6 HOH A 6 306 78 HOH HOH . J 6 HOH A 7 307 8 HOH HOH . J 6 HOH A 8 308 42 HOH HOH . J 6 HOH A 9 309 17 HOH HOH . J 6 HOH A 10 310 22 HOH HOH . J 6 HOH A 11 311 37 HOH HOH . J 6 HOH A 12 312 80 HOH HOH . J 6 HOH A 13 313 12 HOH HOH . J 6 HOH A 14 314 92 HOH HOH . J 6 HOH A 15 315 1 HOH HOH . J 6 HOH A 16 316 7 HOH HOH . J 6 HOH A 17 317 68 HOH HOH . J 6 HOH A 18 318 2 HOH HOH . J 6 HOH A 19 319 19 HOH HOH . J 6 HOH A 20 320 6 HOH HOH . J 6 HOH A 21 321 16 HOH HOH . J 6 HOH A 22 322 25 HOH HOH . J 6 HOH A 23 323 67 HOH HOH . J 6 HOH A 24 324 38 HOH HOH . J 6 HOH A 25 325 14 HOH HOH . J 6 HOH A 26 326 3 HOH HOH . J 6 HOH A 27 327 36 HOH HOH . J 6 HOH A 28 328 21 HOH HOH . J 6 HOH A 29 329 43 HOH HOH . J 6 HOH A 30 330 86 HOH HOH . J 6 HOH A 31 331 4 HOH HOH . J 6 HOH A 32 332 62 HOH HOH . J 6 HOH A 33 333 61 HOH HOH . J 6 HOH A 34 334 20 HOH HOH . J 6 HOH A 35 335 63 HOH HOH . J 6 HOH A 36 336 93 HOH HOH . J 6 HOH A 37 337 51 HOH HOH . J 6 HOH A 38 338 66 HOH HOH . J 6 HOH A 39 339 52 HOH HOH . J 6 HOH A 40 340 87 HOH HOH . J 6 HOH A 41 341 31 HOH HOH . J 6 HOH A 42 342 88 HOH HOH . J 6 HOH A 43 343 70 HOH HOH . J 6 HOH A 44 344 18 HOH HOH . J 6 HOH A 45 345 76 HOH HOH . J 6 HOH A 46 346 39 HOH HOH . J 6 HOH A 47 347 69 HOH HOH . J 6 HOH A 48 348 64 HOH HOH . J 6 HOH A 49 349 49 HOH HOH . J 6 HOH A 50 350 50 HOH HOH . K 6 HOH B 1 301 32 HOH HOH . K 6 HOH B 2 302 83 HOH HOH . K 6 HOH B 3 303 34 HOH HOH . K 6 HOH B 4 304 59 HOH HOH . K 6 HOH B 5 305 26 HOH HOH . K 6 HOH B 6 306 46 HOH HOH . K 6 HOH B 7 307 90 HOH HOH . K 6 HOH B 8 308 35 HOH HOH . K 6 HOH B 9 309 45 HOH HOH . K 6 HOH B 10 310 24 HOH HOH . K 6 HOH B 11 311 11 HOH HOH . K 6 HOH B 12 312 58 HOH HOH . K 6 HOH B 13 313 85 HOH HOH . K 6 HOH B 14 314 15 HOH HOH . K 6 HOH B 15 315 82 HOH HOH . K 6 HOH B 16 316 30 HOH HOH . K 6 HOH B 17 317 71 HOH HOH . K 6 HOH B 18 318 60 HOH HOH . K 6 HOH B 19 319 13 HOH HOH . K 6 HOH B 20 320 28 HOH HOH . K 6 HOH B 21 321 23 HOH HOH . K 6 HOH B 22 322 10 HOH HOH . K 6 HOH B 23 323 9 HOH HOH . K 6 HOH B 24 324 72 HOH HOH . K 6 HOH B 25 325 56 HOH HOH . K 6 HOH B 26 326 84 HOH HOH . K 6 HOH B 27 327 74 HOH HOH . K 6 HOH B 28 328 73 HOH HOH . K 6 HOH B 29 329 41 HOH HOH . K 6 HOH B 30 330 27 HOH HOH . K 6 HOH B 31 331 29 HOH HOH . K 6 HOH B 32 332 33 HOH HOH . K 6 HOH B 33 333 77 HOH HOH . K 6 HOH B 34 334 55 HOH HOH . K 6 HOH B 35 335 53 HOH HOH . K 6 HOH B 36 336 44 HOH HOH . K 6 HOH B 37 337 65 HOH HOH . K 6 HOH B 38 338 57 HOH HOH . K 6 HOH B 39 339 47 HOH HOH . K 6 HOH B 40 340 94 HOH HOH . K 6 HOH B 41 341 40 HOH HOH . K 6 HOH B 42 342 91 HOH HOH . K 6 HOH B 43 343 75 HOH HOH . K 6 HOH B 44 344 54 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 GOL . . . C 2 -52.844 29.544 -2.644 1 40.64 ? C1 GOL 201 A 1 HETATM 2 O O1 GOL . . . C 2 -52.994 28.35 -3.409 1 43.28 ? O1 GOL 201 A 1 HETATM 3 C C2 GOL . . . C 2 -52.941 29.281 -1.16 1 41.24 ? C2 GOL 201 A 1 HETATM 4 O O2 GOL . . . C 2 -51.703 29.63 -0.548 1 50.56 ? O2 GOL 201 A 1 HETATM 5 C C3 GOL . . . C 2 -54.067 30.028 -0.484 1 38.25 ? C3 GOL 201 A 1 HETATM 6 O O3 GOL . . . C 2 -53.989 29.891 0.929 1 35.57 ? O3 GOL 201 A 1 # _model_server_stats.io_time_ms 9 _model_server_stats.parse_time_ms 13 _model_server_stats.create_model_time_ms 6 _model_server_stats.query_time_ms 352 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 6 #