data_8CKF # _model_server_result.job_id -NUC3joagOBGPcpT1DOOVQ _model_server_result.datetime_utc '2024-10-19 03:49:50' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ckf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":201}' # _entry.id 8CKF # _exptl.entry_id 8CKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.321 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(3,5-dimethyl-1,2-oxazol-4-yl)-5-[(~{R})-oxidanyl(pyridin-3-yl)methyl]phenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CKF _cell.length_a 33.54 _cell.length_b 46.889 _cell.length_c 78.577 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H16 N2 O3' _chem_comp.formula_weight 296.321 _chem_comp.id E5Q _chem_comp.mon_nstd_flag . _chem_comp.name 3-(3,5-dimethyl-1,2-oxazol-4-yl)-5-[(~{R})-oxidanyl(pyridin-3-yl)methyl]phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C15 E5Q doub 83 n y N2 C14 E5Q sing 84 n y C15 C16 E5Q sing 85 n y C14 C13 E5Q doub 86 n y C16 C17 E5Q doub 87 n y C13 C17 E5Q sing 88 n y C13 C12 E5Q sing 89 n n C12 O3 E5Q sing 90 n n C12 C8 E5Q sing 91 n n C8 C7 E5Q doub 92 n y C8 C9 E5Q sing 93 n y C4 C1 E5Q sing 94 n n C7 C6 E5Q sing 95 n y C1 O1 E5Q sing 96 n y C1 C2 E5Q doub 97 n y C9 C10 E5Q doub 98 n y O1 N1 E5Q sing 99 n y C6 C2 E5Q sing 100 n n C6 C11 E5Q doub 101 n y C2 C3 E5Q sing 102 n y N1 C3 E5Q doub 103 n y C3 C5 E5Q sing 104 n n C10 C11 E5Q sing 105 n y C10 O2 E5Q sing 106 n n C4 H1 E5Q sing 107 n n C4 H2 E5Q sing 108 n n C4 H3 E5Q sing 109 n n C14 H4 E5Q sing 110 n n C5 H5 E5Q sing 111 n n C5 H6 E5Q sing 112 n n C5 H7 E5Q sing 113 n n C11 H8 E5Q sing 114 n n C7 H9 E5Q sing 115 n n C9 H10 E5Q sing 116 n n C12 H11 E5Q sing 117 n n O2 H12 E5Q sing 118 n n O3 H13 E5Q sing 119 n n C15 H14 E5Q sing 120 n n C16 H15 E5Q sing 121 n n C17 H16 E5Q sing 122 n n # _atom_sites.entry_id 8CKF _atom_sites.fract_transf_matrix[1][1] 0.029815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E5Q A 1 201 203 E5Q E5Q . C 3 V0R A 1 202 204 V0R E5R . D 4 HOH A 1 301 66 HOH HOH . D 4 HOH A 2 302 63 HOH HOH . D 4 HOH A 3 303 34 HOH HOH . D 4 HOH A 4 304 8 HOH HOH . D 4 HOH A 5 305 3 HOH HOH . D 4 HOH A 6 306 30 HOH HOH . D 4 HOH A 7 307 51 HOH HOH . D 4 HOH A 8 308 2 HOH HOH . D 4 HOH A 9 309 1 HOH HOH . D 4 HOH A 10 310 12 HOH HOH . D 4 HOH A 11 311 38 HOH HOH . D 4 HOH A 12 312 6 HOH HOH . D 4 HOH A 13 313 7 HOH HOH . D 4 HOH A 14 314 32 HOH HOH . D 4 HOH A 15 315 49 HOH HOH . D 4 HOH A 16 316 21 HOH HOH . D 4 HOH A 17 317 45 HOH HOH . D 4 HOH A 18 318 43 HOH HOH . D 4 HOH A 19 319 14 HOH HOH . D 4 HOH A 20 320 11 HOH HOH . D 4 HOH A 21 321 60 HOH HOH . D 4 HOH A 22 322 54 HOH HOH . D 4 HOH A 23 323 33 HOH HOH . D 4 HOH A 24 324 44 HOH HOH . D 4 HOH A 25 325 28 HOH HOH . D 4 HOH A 26 326 16 HOH HOH . D 4 HOH A 27 327 15 HOH HOH . D 4 HOH A 28 328 4 HOH HOH . D 4 HOH A 29 329 19 HOH HOH . D 4 HOH A 30 330 22 HOH HOH . D 4 HOH A 31 331 13 HOH HOH . D 4 HOH A 32 332 17 HOH HOH . D 4 HOH A 33 333 23 HOH HOH . D 4 HOH A 34 334 39 HOH HOH . D 4 HOH A 35 335 27 HOH HOH . D 4 HOH A 36 336 64 HOH HOH . D 4 HOH A 37 337 62 HOH HOH . D 4 HOH A 38 338 41 HOH HOH . D 4 HOH A 39 339 5 HOH HOH . D 4 HOH A 40 340 46 HOH HOH . D 4 HOH A 41 341 18 HOH HOH . D 4 HOH A 42 342 58 HOH HOH . D 4 HOH A 43 343 55 HOH HOH . D 4 HOH A 44 344 26 HOH HOH . D 4 HOH A 45 345 59 HOH HOH . D 4 HOH A 46 346 20 HOH HOH . D 4 HOH A 47 347 40 HOH HOH . D 4 HOH A 48 348 10 HOH HOH . D 4 HOH A 49 349 35 HOH HOH . D 4 HOH A 50 350 52 HOH HOH . D 4 HOH A 51 351 57 HOH HOH . D 4 HOH A 52 352 25 HOH HOH . D 4 HOH A 53 353 31 HOH HOH . D 4 HOH A 54 354 9 HOH HOH . D 4 HOH A 55 355 65 HOH HOH . D 4 HOH A 56 356 36 HOH HOH . D 4 HOH A 57 357 56 HOH HOH . D 4 HOH A 58 358 29 HOH HOH . D 4 HOH A 59 359 53 HOH HOH . D 4 HOH A 60 360 37 HOH HOH . D 4 HOH A 61 361 50 HOH HOH . D 4 HOH A 62 362 48 HOH HOH . D 4 HOH A 63 363 42 HOH HOH . D 4 HOH A 64 364 24 HOH HOH . D 4 HOH A 65 365 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C4 E5Q . A . B 2 13.024 -7.621 -0.49 0.5 30.07 ? C4 E5Q 201 A 1 HETATM 2 C C14 E5Q . A . B 2 8.934 -6.922 -5.109 0.5 38.78 ? C14 E5Q 201 A 1 HETATM 3 C C5 E5Q . A . B 2 10.818 -3.48 1.504 0.5 29.64 ? C5 E5Q 201 A 1 HETATM 4 C C6 E5Q . A . B 2 10.186 -6.343 0.074 0.5 26.81 ? C6 E5Q 201 A 1 HETATM 5 C C11 E5Q . A . B 2 9.17 -6.316 1.015 0.5 25.84 ? C11 E5Q 201 A 1 HETATM 6 C C7 E5Q . A . B 2 9.957 -6.9 -1.175 0.5 27.2 ? C7 E5Q 201 A 1 HETATM 7 C C8 E5Q . A . B 2 8.717 -7.435 -1.48 0.5 28.32 ? C8 E5Q 201 A 1 HETATM 8 C C9 E5Q . A . B 2 7.703 -7.411 -0.538 0.5 31.42 ? C9 E5Q 201 A 1 HETATM 9 C C10 E5Q . A . B 2 7.929 -6.851 0.71 0.5 27.56 ? C10 E5Q 201 A 1 HETATM 10 C C12 E5Q . A . B 2 8.473 -8.054 -2.856 0.5 32.31 ? C12 E5Q 201 A 1 HETATM 11 C C13 E5Q . A . B 2 8.28 -6.947 -3.89 0.5 32.59 ? C13 E5Q 201 A 1 HETATM 12 N N1 E5Q . A . B 2 13.104 -4.348 1.128 0.5 33.16 ? N1 E5Q 201 A 1 HETATM 13 N N2 E5Q . A . B 2 8.765 -5.948 -6.029 0.5 36.96 ? N2 E5Q 201 A 1 HETATM 14 C C3 E5Q . A . B 2 11.792 -4.542 1.001 0.5 31.2 ? C3 E5Q 201 A 1 HETATM 15 O O1 E5Q . A . B 2 13.722 -5.464 0.589 0.5 29.99 ? O1 E5Q 201 A 1 HETATM 16 C C1 E5Q . A . B 2 12.773 -6.311 0.152 0.5 26.18 ? C1 E5Q 201 A 1 HETATM 17 C C2 E5Q . A . B 2 11.554 -5.75 0.402 0.5 25.5 ? C2 E5Q 201 A 1 HETATM 18 O O2 E5Q . A . B 2 6.903 -6.826 1.663 0.5 28.48 ? O2 E5Q 201 A 1 HETATM 19 O O3 E5Q . A . B 2 7.324 -8.85 -2.81 0.5 28.47 ? O3 E5Q 201 A 1 HETATM 20 C C15 E5Q . A . B 2 7.914 -4.934 -5.756 0.5 35.25 ? C15 E5Q 201 A 1 HETATM 21 C C16 E5Q . A . B 2 7.234 -4.91 -4.548 0.5 36.8 ? C16 E5Q 201 A 1 HETATM 22 C C17 E5Q . A . B 2 7.413 -5.897 -3.634 0.5 34.06 ? C17 E5Q 201 A 1 HETATM 23 H H1 E5Q . A . B 2 13.195 -7.491 -1.435 0.5 36.29 ? H1 E5Q 201 A 1 HETATM 24 H H2 E5Q . A . B 2 12.247 -8.19 -0.377 0.5 36.29 ? H2 E5Q 201 A 1 HETATM 25 H H3 E5Q . A . B 2 13.795 -8.041 -0.076 0.5 36.29 ? H3 E5Q 201 A 1 HETATM 26 H H4 E5Q . A . B 2 9.521 -7.616 -5.307 0.5 46.75 ? H4 E5Q 201 A 1 HETATM 27 H H5 E5Q . A . B 2 9.94 -3.64 1.124 0.5 35.78 ? H5 E5Q 201 A 1 HETATM 28 H H6 E5Q . A . B 2 10.765 -3.523 2.472 0.5 35.78 ? H6 E5Q 201 A 1 HETATM 29 H H7 E5Q . A . B 2 11.131 -2.602 1.236 0.5 35.78 ? H7 E5Q 201 A 1 HETATM 30 H H8 E5Q . A . B 2 9.322 -5.939 1.851 0.5 31.22 ? H8 E5Q 201 A 1 HETATM 31 H H9 E5Q . A . B 2 10.637 -6.915 -1.809 0.5 32.86 ? H9 E5Q 201 A 1 HETATM 32 H H10 E5Q . A . B 2 6.87 -7.771 -0.742 0.5 37.92 ? H10 E5Q 201 A 1 HETATM 33 H H11 E5Q . A . B 2 9.238 -8.597 -3.105 0.5 38.98 ? H11 E5Q 201 A 1 HETATM 34 H H12 E5Q . A . B 2 6.637 -7.619 1.814 0.5 34.39 ? H12 E5Q 201 A 1 HETATM 35 H H13 E5Q . A . B 2 7.529 -9.654 -2.996 0.5 34.38 ? H13 E5Q 201 A 1 HETATM 36 H H14 E5Q . A . B 2 7.786 -4.254 -6.377 0.5 42.51 ? H14 E5Q 201 A 1 HETATM 37 H H15 E5Q . A . B 2 6.649 -4.211 -4.363 0.5 44.37 ? H15 E5Q 201 A 1 HETATM 38 H H16 E5Q . A . B 2 6.949 -5.868 -2.828 0.5 41.08 ? H16 E5Q 201 A 1 # _model_server_stats.io_time_ms 55 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 38 #