data_8CKF # _model_server_result.job_id VdnHrT7dFQGLiN6H0_osdA _model_server_result.datetime_utc '2025-04-20 16:14:42' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ckf # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":202}' # _entry.id 8CKF # _exptl.entry_id 8CKF _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 296.321 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 3-(3,5-dimethyl-1,2-oxazol-4-yl)-5-[(~{S})-oxidanyl(pyridin-3-yl)methyl]phenol _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CKF _cell.length_a 33.54 _cell.length_b 46.889 _cell.length_c 78.577 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CKF _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall 'P 2ac 2ab' _symmetry.space_group_name_H-M 'P 21 21 21' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _chem_comp.formula 'C17 H16 N2 O3' _chem_comp.formula_weight 296.321 _chem_comp.id V0R _chem_comp.mon_nstd_flag . _chem_comp.name 3-(3,5-dimethyl-1,2-oxazol-4-yl)-5-[(~{S})-oxidanyl(pyridin-3-yl)methyl]phenol _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag N2 C15 V0R doub 398 n y N2 C14 V0R sing 399 n y C15 C16 V0R sing 400 n y C14 C13 V0R doub 401 n y C16 C17 V0R doub 402 n y C13 C17 V0R sing 403 n y C13 C12 V0R sing 404 n n O3 C12 V0R sing 405 n n C12 C8 V0R sing 406 n n C8 C7 V0R doub 407 n y C8 C9 V0R sing 408 n y C7 C6 V0R sing 409 n y C9 C10 V0R doub 410 n y C4 C1 V0R sing 411 n n C6 C2 V0R sing 412 n n C6 C11 V0R doub 413 n y C1 C2 V0R doub 414 n y C1 O1 V0R sing 415 n y C2 C3 V0R sing 416 n y O1 N1 V0R sing 417 n y C10 C11 V0R sing 418 n y C10 O2 V0R sing 419 n n C3 N1 V0R doub 420 n y C3 C5 V0R sing 421 n n C11 H8 V0R sing 422 n n C12 H11 V0R sing 423 n n C14 H4 V0R sing 424 n n C15 H14 V0R sing 425 n n C4 H1 V0R sing 426 n n C4 H2 V0R sing 427 n n C4 H3 V0R sing 428 n n C5 H6 V0R sing 429 n n C5 H7 V0R sing 430 n n C5 H5 V0R sing 431 n n C7 H9 V0R sing 432 n n C9 H10 V0R sing 433 n n O2 H12 V0R sing 434 n n O3 H13 V0R sing 435 n n C16 H15 V0R sing 436 n n C17 H16 V0R sing 437 n n # _atom_sites.entry_id 8CKF _atom_sites.fract_transf_matrix[1][1] 0.029815 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.021327 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012726 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 E5Q A 1 201 203 E5Q E5Q . C 3 V0R A 1 202 204 V0R E5R . D 4 HOH A 1 301 66 HOH HOH . D 4 HOH A 2 302 63 HOH HOH . D 4 HOH A 3 303 34 HOH HOH . D 4 HOH A 4 304 8 HOH HOH . D 4 HOH A 5 305 3 HOH HOH . D 4 HOH A 6 306 30 HOH HOH . D 4 HOH A 7 307 51 HOH HOH . D 4 HOH A 8 308 2 HOH HOH . D 4 HOH A 9 309 1 HOH HOH . D 4 HOH A 10 310 12 HOH HOH . D 4 HOH A 11 311 38 HOH HOH . D 4 HOH A 12 312 6 HOH HOH . D 4 HOH A 13 313 7 HOH HOH . D 4 HOH A 14 314 32 HOH HOH . D 4 HOH A 15 315 49 HOH HOH . D 4 HOH A 16 316 21 HOH HOH . D 4 HOH A 17 317 45 HOH HOH . D 4 HOH A 18 318 43 HOH HOH . D 4 HOH A 19 319 14 HOH HOH . D 4 HOH A 20 320 11 HOH HOH . D 4 HOH A 21 321 60 HOH HOH . D 4 HOH A 22 322 54 HOH HOH . D 4 HOH A 23 323 33 HOH HOH . D 4 HOH A 24 324 44 HOH HOH . D 4 HOH A 25 325 28 HOH HOH . D 4 HOH A 26 326 16 HOH HOH . D 4 HOH A 27 327 15 HOH HOH . D 4 HOH A 28 328 4 HOH HOH . D 4 HOH A 29 329 19 HOH HOH . D 4 HOH A 30 330 22 HOH HOH . D 4 HOH A 31 331 13 HOH HOH . D 4 HOH A 32 332 17 HOH HOH . D 4 HOH A 33 333 23 HOH HOH . D 4 HOH A 34 334 39 HOH HOH . D 4 HOH A 35 335 27 HOH HOH . D 4 HOH A 36 336 64 HOH HOH . D 4 HOH A 37 337 62 HOH HOH . D 4 HOH A 38 338 41 HOH HOH . D 4 HOH A 39 339 5 HOH HOH . D 4 HOH A 40 340 46 HOH HOH . D 4 HOH A 41 341 18 HOH HOH . D 4 HOH A 42 342 58 HOH HOH . D 4 HOH A 43 343 55 HOH HOH . D 4 HOH A 44 344 26 HOH HOH . D 4 HOH A 45 345 59 HOH HOH . D 4 HOH A 46 346 20 HOH HOH . D 4 HOH A 47 347 40 HOH HOH . D 4 HOH A 48 348 10 HOH HOH . D 4 HOH A 49 349 35 HOH HOH . D 4 HOH A 50 350 52 HOH HOH . D 4 HOH A 51 351 57 HOH HOH . D 4 HOH A 52 352 25 HOH HOH . D 4 HOH A 53 353 31 HOH HOH . D 4 HOH A 54 354 9 HOH HOH . D 4 HOH A 55 355 65 HOH HOH . D 4 HOH A 56 356 36 HOH HOH . D 4 HOH A 57 357 56 HOH HOH . D 4 HOH A 58 358 29 HOH HOH . D 4 HOH A 59 359 53 HOH HOH . D 4 HOH A 60 360 37 HOH HOH . D 4 HOH A 61 361 50 HOH HOH . D 4 HOH A 62 362 48 HOH HOH . D 4 HOH A 63 363 42 HOH HOH . D 4 HOH A 64 364 24 HOH HOH . D 4 HOH A 65 365 47 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 V0R . B . C 3 12.669 -6.378 0.307 0.5 26.34 ? C1 V0R 202 A 1 HETATM 2 C C10 V0R . B . C 3 7.825 -6.837 0.755 0.5 27.58 ? C10 V0R 202 A 1 HETATM 3 C C11 V0R . B . C 3 9.067 -6.314 1.081 0.5 25.87 ? C11 V0R 202 A 1 HETATM 4 C C12 V0R . B . C 3 8.413 -8.015 -2.814 0.5 32.35 ? C12 V0R 202 A 1 HETATM 5 C C13 V0R . B . C 3 8.326 -6.887 -3.84 0.5 32.57 ? C13 V0R 202 A 1 HETATM 6 C C14 V0R . B . C 3 9.083 -6.838 -4.997 0.5 38.82 ? C14 V0R 202 A 1 HETATM 7 C C15 V0R . B . C 3 8.14 -4.824 -5.675 0.5 35.42 ? C15 V0R 202 A 1 HETATM 8 C C2 V0R . B . C 3 11.465 -5.766 0.499 0.5 25.5 ? C2 V0R 202 A 1 HETATM 9 C C3 V0R . B . C 3 11.727 -4.539 1.05 0.5 31.19 ? C3 V0R 202 A 1 HETATM 10 C C4 V0R . B . C 3 12.883 -7.725 -0.266 0.5 30.11 ? C4 V0R 202 A 1 HETATM 11 C C5 V0R . B . C 3 10.78 -3.422 1.48 0.5 29.66 ? C5 V0R 202 A 1 HETATM 12 C C6 V0R . B . C 3 10.094 -6.341 0.154 0.5 26.75 ? C6 V0R 202 A 1 HETATM 13 C C7 V0R . B . C 3 9.878 -6.889 -1.102 0.5 27.23 ? C7 V0R 202 A 1 HETATM 14 C C8 V0R . B . C 3 8.639 -7.412 -1.428 0.5 28.27 ? C8 V0R 202 A 1 HETATM 15 C C9 V0R . B . C 3 7.611 -7.385 -0.5 0.5 31.45 ? C9 V0R 202 A 1 HETATM 16 O O1 V0R . B . C 3 13.636 -5.546 0.735 0.5 30.14 ? O1 V0R 202 A 1 HETATM 17 O O2 V0R . B . C 3 6.786 -6.811 1.694 0.5 28.5 ? O2 V0R 202 A 1 HETATM 18 O O3 V0R . B . C 3 9.479 -8.859 -3.14 0.5 25.4 ? O3 V0R 202 A 1 HETATM 19 C C16 V0R . B . C 3 7.358 -4.823 -4.531 0.5 36.77 ? C16 V0R 202 A 1 HETATM 20 C C17 V0R . B . C 3 7.449 -5.835 -3.631 0.5 34.06 ? C17 V0R 202 A 1 HETATM 21 N N1 V0R . B . C 3 13.043 -4.385 1.206 0.5 33.18 ? N1 V0R 202 A 1 HETATM 22 N N2 V0R . B . C 3 9.003 -5.838 -5.902 0.5 37.16 ? N2 V0R 202 A 1 HETATM 23 H H8 V0R . B . C 3 9.21 -5.946 1.923 0.5 31.25 ? H8 V0R 202 A 1 HETATM 24 H H11 V0R . B . C 3 7.589 -8.526 -2.817 0.5 39.03 ? H11 V0R 202 A 1 HETATM 25 H H4 V0R . B . C 3 9.679 -7.532 -5.161 0.5 46.8 ? H4 V0R 202 A 1 HETATM 26 H H14 V0R . B . C 3 8.07 -4.126 -6.287 0.5 42.72 ? H14 V0R 202 A 1 HETATM 27 H H1 V0R . B . C 3 12.409 -8.383 0.268 0.5 36.34 ? H1 V0R 202 A 1 HETATM 28 H H2 V0R . B . C 3 13.831 -7.93 -0.265 0.5 36.34 ? H2 V0R 202 A 1 HETATM 29 H H3 V0R . B . C 3 12.548 -7.746 -1.176 0.5 36.34 ? H3 V0R 202 A 1 HETATM 30 H H6 V0R . B . C 3 10.055 -3.796 2.004 0.5 35.8 ? H6 V0R 202 A 1 HETATM 31 H H7 V0R . B . C 3 10.418 -2.985 0.693 0.5 35.8 ? H7 V0R 202 A 1 HETATM 32 H H5 V0R . B . C 3 11.265 -2.774 2.014 0.5 35.8 ? H5 V0R 202 A 1 HETATM 33 H H9 V0R . B . C 3 10.567 -6.904 -1.726 0.5 32.89 ? H9 V0R 202 A 1 HETATM 34 H H10 V0R . B . C 3 6.778 -7.736 -0.719 0.5 37.94 ? H10 V0R 202 A 1 HETATM 35 H H12 V0R . B . C 3 6.038 -6.782 1.289 0.5 34.41 ? H12 V0R 202 A 1 HETATM 36 H H13 V0R . B . C 3 9.603 -9.415 -2.509 0.5 30.69 ? H13 V0R 202 A 1 HETATM 37 H H15 V0R . B . C 3 6.765 -4.123 -4.378 0.5 44.33 ? H15 V0R 202 A 1 HETATM 38 H H16 V0R . B . C 3 6.919 -5.821 -2.867 0.5 41.08 ? H16 V0R 202 A 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 10 _model_server_stats.create_model_time_ms 3 _model_server_stats.query_time_ms 260 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 38 #