data_8CKG # _model_server_result.job_id EdLTjpwdSZjl5GwVznHuKA _model_server_result.datetime_utc '2024-12-26 22:37:49' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ckg # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":802}' # _entry.id 8CKG # _exptl.entry_id 8CKG _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 180.156 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description alpha-D-mannopyranose _entity.pdbx_number_of_molecules 4 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 100.46 _cell.angle_gamma 90 _cell.entry_id 8CKG _cell.length_a 105.081 _cell.length_b 29.286 _cell.length_c 90.429 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CKG _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'C 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 3 D N N ? 3 E N N ? 3 G N N ? 3 H N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 17 A CYS 665 1_555 A SG CYS 48 A CYS 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf2 A SG CYS 21 A CYS 669 1_555 A SG CYS 53 A CYS 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.061 ? disulf ? disulf3 A SG CYS 32 A CYS 680 1_555 A SG CYS 38 A CYS 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.042 ? disulf ? disulf4 A SG CYS 41 A CYS 689 1_555 B SG CYS 41 B CYS 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.033 ? disulf ? disulf5 A SG CYS 85 A CYS 733 1_555 B SG CYS 85 B CYS 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? disulf ? disulf6 A SG CYS 107 A CYS 755 1_555 A SG CYS 115 A CYS 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.049 ? disulf ? disulf7 B SG CYS 17 B CYS 665 1_555 B SG CYS 48 B CYS 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? disulf ? disulf8 B SG CYS 21 B CYS 669 1_555 B SG CYS 53 B CYS 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.053 ? disulf ? disulf9 B SG CYS 32 B CYS 680 1_555 B SG CYS 38 B CYS 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.045 ? disulf ? disulf10 B SG CYS 107 B CYS 755 1_555 B SG CYS 115 B CYS 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.07 ? covale ? covale1 A CD1 TRP 8 A TRP 656 1_555 D C1 MAN . A MAN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.494 ? covale ? covale2 A CD1 TRP 11 A TRP 659 1_555 E C1 MAN . A MAN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.493 ? covale ? covale3 B CD1 TRP 8 B TRP 656 1_555 G C1 MAN . B MAN 802 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? covale ? covale4 B CD1 TRP 11 B TRP 659 1_555 H C1 MAN . B MAN 803 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? # _chem_comp.formula 'C6 H12 O6' _chem_comp.formula_weight 180.156 _chem_comp.id MAN _chem_comp.mon_nstd_flag . _chem_comp.name alpha-D-mannopyranose _chem_comp.type 'd-saccharide, alpha linking' _chem_comp.pdbx_synonyms alpha-D-mannose;D-mannose;mannose # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 MAN sing 218 n n C1 O1 MAN sing 219 n n C1 O5 MAN sing 220 n n C1 H1 MAN sing 221 n n C2 C3 MAN sing 222 n n C2 O2 MAN sing 223 n n C2 H2 MAN sing 224 n n C3 C4 MAN sing 225 n n C3 O3 MAN sing 226 n n C3 H3 MAN sing 227 n n C4 C5 MAN sing 228 n n C4 O4 MAN sing 229 n n C4 H4 MAN sing 230 n n C5 C6 MAN sing 231 n n C5 O5 MAN sing 232 n n C5 H5 MAN sing 233 n n C6 O6 MAN sing 234 n n C6 H61 MAN sing 235 n n C6 H62 MAN sing 236 n n O1 HO1 MAN sing 237 n n O2 HO2 MAN sing 238 n n O3 HO3 MAN sing 239 n n O4 HO4 MAN sing 240 n n O6 HO6 MAN sing 241 n n # loop_ _pdbx_chem_comp_identifier.comp_id _pdbx_chem_comp_identifier.identifier _pdbx_chem_comp_identifier.type _pdbx_chem_comp_identifier.program _pdbx_chem_comp_identifier.program_version MAN DManpa 'CONDENSED IUPAC CARBOHYDRATE SYMBOL' GMML 1 MAN a-D-mannopyranose 'COMMON NAME' GMML 1 MAN a-D-Manp 'IUPAC CARBOHYDRATE SYMBOL' PDB-CARE 1 MAN Man 'SNFG CARBOHYDRATE SYMBOL' GMML 1 # _atom_sites.entry_id 8CKG _atom_sites.fract_transf_matrix[1][1] 0.009516 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001757 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.034146 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.011245 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 SO4 A 1 801 1 SO4 SO4 . D 3 MAN A 1 802 1 MAN MAN . E 3 MAN A 1 803 1 MAN MAN . F 2 SO4 B 1 801 2 SO4 SO4 . G 3 MAN B 1 802 1 MAN MAN . H 3 MAN B 1 803 1 MAN MAN . I 4 HOH A 1 901 52 HOH HOH . I 4 HOH A 2 902 92 HOH HOH . I 4 HOH A 3 903 85 HOH HOH . I 4 HOH A 4 904 50 HOH HOH . I 4 HOH A 5 905 36 HOH HOH . I 4 HOH A 6 906 39 HOH HOH . I 4 HOH A 7 907 79 HOH HOH . I 4 HOH A 8 908 57 HOH HOH . I 4 HOH A 9 909 98 HOH HOH . I 4 HOH A 10 910 5 HOH HOH . I 4 HOH A 11 911 60 HOH HOH . I 4 HOH A 12 912 101 HOH HOH . I 4 HOH A 13 913 2 HOH HOH . I 4 HOH A 14 914 1 HOH HOH . I 4 HOH A 15 915 41 HOH HOH . I 4 HOH A 16 916 78 HOH HOH . I 4 HOH A 17 917 18 HOH HOH . I 4 HOH A 18 918 27 HOH HOH . I 4 HOH A 19 919 19 HOH HOH . I 4 HOH A 20 920 49 HOH HOH . I 4 HOH A 21 921 26 HOH HOH . I 4 HOH A 22 922 74 HOH HOH . I 4 HOH A 23 923 106 HOH HOH . I 4 HOH A 24 924 40 HOH HOH . I 4 HOH A 25 925 10 HOH HOH . I 4 HOH A 26 926 6 HOH HOH . I 4 HOH A 27 927 88 HOH HOH . I 4 HOH A 28 928 38 HOH HOH . I 4 HOH A 29 929 83 HOH HOH . I 4 HOH A 30 930 28 HOH HOH . I 4 HOH A 31 931 64 HOH HOH . I 4 HOH A 32 932 31 HOH HOH . I 4 HOH A 33 933 69 HOH HOH . I 4 HOH A 34 934 109 HOH HOH . I 4 HOH A 35 935 45 HOH HOH . I 4 HOH A 36 936 111 HOH HOH . I 4 HOH A 37 937 63 HOH HOH . I 4 HOH A 38 938 42 HOH HOH . I 4 HOH A 39 939 102 HOH HOH . I 4 HOH A 40 940 67 HOH HOH . I 4 HOH A 41 941 70 HOH HOH . I 4 HOH A 42 942 17 HOH HOH . I 4 HOH A 43 943 84 HOH HOH . J 4 HOH B 1 901 3 HOH HOH . J 4 HOH B 2 902 15 HOH HOH . J 4 HOH B 3 903 51 HOH HOH . J 4 HOH B 4 904 48 HOH HOH . J 4 HOH B 5 905 61 HOH HOH . J 4 HOH B 6 906 22 HOH HOH . J 4 HOH B 7 907 76 HOH HOH . J 4 HOH B 8 908 54 HOH HOH . J 4 HOH B 9 909 105 HOH HOH . J 4 HOH B 10 910 23 HOH HOH . J 4 HOH B 11 911 21 HOH HOH . J 4 HOH B 12 912 110 HOH HOH . J 4 HOH B 13 913 80 HOH HOH . J 4 HOH B 14 914 32 HOH HOH . J 4 HOH B 15 915 81 HOH HOH . J 4 HOH B 16 916 44 HOH HOH . J 4 HOH B 17 917 24 HOH HOH . J 4 HOH B 18 918 30 HOH HOH . J 4 HOH B 19 919 37 HOH HOH . J 4 HOH B 20 920 46 HOH HOH . J 4 HOH B 21 921 25 HOH HOH . J 4 HOH B 22 922 11 HOH HOH . J 4 HOH B 23 923 34 HOH HOH . J 4 HOH B 24 924 20 HOH HOH . J 4 HOH B 25 925 4 HOH HOH . J 4 HOH B 26 926 43 HOH HOH . J 4 HOH B 27 927 35 HOH HOH . J 4 HOH B 28 928 7 HOH HOH . J 4 HOH B 29 929 8 HOH HOH . J 4 HOH B 30 930 13 HOH HOH . J 4 HOH B 31 931 82 HOH HOH . J 4 HOH B 32 932 47 HOH HOH . J 4 HOH B 33 933 33 HOH HOH . J 4 HOH B 34 934 93 HOH HOH . J 4 HOH B 35 935 108 HOH HOH . J 4 HOH B 36 936 14 HOH HOH . J 4 HOH B 37 937 9 HOH HOH . J 4 HOH B 38 938 99 HOH HOH . J 4 HOH B 39 939 29 HOH HOH . J 4 HOH B 40 940 87 HOH HOH . J 4 HOH B 41 941 86 HOH HOH . J 4 HOH B 42 942 73 HOH HOH . J 4 HOH B 43 943 77 HOH HOH . J 4 HOH B 44 944 71 HOH HOH . J 4 HOH B 45 945 62 HOH HOH . J 4 HOH B 46 946 55 HOH HOH . J 4 HOH B 47 947 75 HOH HOH . J 4 HOH B 48 948 59 HOH HOH . J 4 HOH B 49 949 68 HOH HOH . J 4 HOH B 50 950 53 HOH HOH . J 4 HOH B 51 951 56 HOH HOH . J 4 HOH B 52 952 72 HOH HOH . J 4 HOH B 53 953 12 HOH HOH . J 4 HOH B 54 954 66 HOH HOH . J 4 HOH B 55 955 94 HOH HOH . J 4 HOH B 56 956 58 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 MAN . . . D 3 12.573 -33.083 44.953 1 86.95 ? C1 MAN 802 A 1 HETATM 2 C C2 MAN . . . D 3 12.272 -34.23 43.988 1 88.41 ? C2 MAN 802 A 1 HETATM 3 C C3 MAN . . . D 3 13.017 -35.493 44.407 1 81.03 ? C3 MAN 802 A 1 HETATM 4 C C4 MAN . . . D 3 12.772 -35.818 45.878 1 77.94 ? C4 MAN 802 A 1 HETATM 5 C C5 MAN . . . D 3 13.024 -34.601 46.766 1 79.89 ? C5 MAN 802 A 1 HETATM 6 C C6 MAN . . . D 3 14.473 -34.163 46.831 1 70.45 ? C6 MAN 802 A 1 HETATM 7 O O2 MAN . . . D 3 12.656 -33.86 42.667 1 88.43 ? O2 MAN 802 A 1 HETATM 8 O O3 MAN . . . D 3 14.408 -35.363 44.13 1 82.35 ? O3 MAN 802 A 1 HETATM 9 O O4 MAN . . . D 3 11.425 -36.247 46.058 1 75.23 ? O4 MAN 802 A 1 HETATM 10 O O5 MAN . . . D 3 12.26 -33.478 46.293 1 84.78 ? O5 MAN 802 A 1 HETATM 11 O O6 MAN . . . D 3 14.649 -33.076 47.729 1 74.6 ? O6 MAN 802 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 12 _model_server_stats.query_time_ms 305 _model_server_stats.encode_time_ms 1 _model_server_stats.element_count 11 #