data_8CKK
#
_model_server_result.job_id            dHBuwMUg6ksNmINFVzPcNg 
_model_server_result.datetime_utc      '2024-10-19 16:43:16' 
_model_server_result.server_version    0.9.12 
_model_server_result.query_name        ligand 
_model_server_result.source_id         pdb-bcif 
_model_server_result.entry_id          8ckk 
#
_model_server_params.name     atom_site 
_model_server_params.value    '{"label_asym_id":"D","auth_seq_id":802}' 
#
_entry.id    8CKK 
#
_exptl.entry_id    8CKK 
_exptl.method      'X-RAY DIFFRACTION' 
#
_entity.details                     ? 
_entity.formula_weight              62.005 
_entity.id                          3 
_entity.src_method                  syn 
_entity.type                        non-polymer 
_entity.pdbx_description            'NITRATE ION' 
_entity.pdbx_number_of_molecules    17 
_entity.pdbx_parent_entity_id       . 
_entity.pdbx_mutation               ? 
_entity.pdbx_fragment               ? 
_entity.pdbx_ec                     ? 
#
_cell.angle_alpha         90 
_cell.angle_beta          90 
_cell.angle_gamma         90 
_cell.entry_id            8CKK 
_cell.length_a            51.894 
_cell.length_b            68.347 
_cell.length_c            85.502 
_cell.Z_PDB               8 
_cell.pdbx_unique_axis    ? 
#
_symmetry.entry_id                 8CKK 
_symmetry.cell_setting             ? 
_symmetry.Int_Tables_number        19 
_symmetry.space_group_name_Hall    'P 2ac 2ab' 
_symmetry.space_group_name_H-M     'P 21 21 21' 
#
_pdbx_struct_assembly.method_details        ? 
_pdbx_struct_assembly.oligomeric_details    dimeric 
_pdbx_struct_assembly.oligomeric_count      2 
_pdbx_struct_assembly.details               author_defined_assembly 
_pdbx_struct_assembly.id                    1 
#
_pdbx_struct_assembly_gen.asym_id_list       A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y 
_pdbx_struct_assembly_gen.assembly_id        1 
_pdbx_struct_assembly_gen.oper_expression    1 
#
_pdbx_struct_oper_list.id                    1 
_pdbx_struct_oper_list.type                  'identity operation' 
_pdbx_struct_oper_list.name                  1_555 
_pdbx_struct_oper_list.symmetry_operation    x,y,z 
_pdbx_struct_oper_list.matrix[1][1]          1 
_pdbx_struct_oper_list.matrix[1][2]          0 
_pdbx_struct_oper_list.matrix[1][3]          0 
_pdbx_struct_oper_list.matrix[2][1]          0 
_pdbx_struct_oper_list.matrix[2][2]          1 
_pdbx_struct_oper_list.matrix[2][3]          0 
_pdbx_struct_oper_list.matrix[3][1]          0 
_pdbx_struct_oper_list.matrix[3][2]          0 
_pdbx_struct_oper_list.matrix[3][3]          1 
_pdbx_struct_oper_list.vector[1]             0 
_pdbx_struct_oper_list.vector[2]             0 
_pdbx_struct_oper_list.vector[3]             0 
#
loop_
_struct_asym.details
_struct_asym.entity_id
_struct_asym.id
_struct_asym.pdbx_modified
_struct_asym.pdbx_blank_PDB_chainid_flag
? 3 D N N 
? 3 E N N 
? 3 F N N 
? 3 G N N 
? 3 H N N 
? 3 I N N 
? 3 J N N 
? 3 K N N 
? 3 L N N 
? 3 N N N 
? 3 O N N 
? 3 P N N 
? 3 Q N N 
? 3 R N N 
? 3 S N N 
? 3 T N N 
? 3 U N N 
#
loop_
_struct_conn.conn_type_id
_struct_conn.details
_struct_conn.id
_struct_conn.ptnr1_label_asym_id
_struct_conn.ptnr1_label_atom_id
_struct_conn.ptnr1_label_comp_id
_struct_conn.ptnr1_label_seq_id
_struct_conn.ptnr1_auth_asym_id
_struct_conn.ptnr1_auth_comp_id
_struct_conn.ptnr1_auth_seq_id
_struct_conn.ptnr1_symmetry
_struct_conn.ptnr2_label_asym_id
_struct_conn.ptnr2_label_atom_id
_struct_conn.ptnr2_label_comp_id
_struct_conn.ptnr2_label_seq_id
_struct_conn.ptnr2_auth_asym_id
_struct_conn.ptnr2_auth_comp_id
_struct_conn.ptnr2_auth_seq_id
_struct_conn.ptnr2_symmetry
_struct_conn.pdbx_ptnr1_PDB_ins_code
_struct_conn.pdbx_ptnr1_label_alt_id
_struct_conn.pdbx_ptnr1_standard_comp_id
_struct_conn.pdbx_ptnr2_PDB_ins_code
_struct_conn.pdbx_ptnr2_label_alt_id
_struct_conn.pdbx_ptnr3_PDB_ins_code
_struct_conn.pdbx_ptnr3_label_alt_id
_struct_conn.pdbx_ptnr3_label_asym_id
_struct_conn.pdbx_ptnr3_label_atom_id
_struct_conn.pdbx_ptnr3_label_comp_id
_struct_conn.pdbx_ptnr3_label_seq_id
_struct_conn.pdbx_PDB_id
_struct_conn.pdbx_dist_value
_struct_conn.pdbx_value_order
disulf ? disulf1 A SG CYS 17 A CYS 665 1_555 A SG CYS 48 A CYS 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf2 A SG CYS 21 A CYS 669 1_555 A SG CYS 53 A CYS 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.037 ? 
disulf ? disulf3 A SG CYS 32 A CYS 680 1_555 A SG CYS 38 A CYS 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.03 ? 
disulf ? disulf4 A SG CYS 41 A CYS 689 1_555 B SG CYS 41 B CYS 689 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf5 A SG CYS 85 A CYS 733 1_555 B SG CYS 85 B CYS 733 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.027 ? 
disulf ? disulf6 A SG CYS 107 A CYS 755 1_555 A SG CYS 115 A CYS 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf7 B SG CYS 17 B CYS 665 1_555 B SG CYS 48 B CYS 696 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf8 B SG CYS 21 B CYS 669 1_555 B SG CYS 53 B CYS 701 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.032 ? 
disulf ? disulf9 B SG CYS 32 B CYS 680 1_555 B SG CYS 38 B CYS 686 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.029 ? 
disulf ? disulf10 B SG CYS 107 B CYS 755 1_555 B SG CYS 115 B CYS 763 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.023 ? 
covale ? covale1 A CD1 TRP 8 A TRP 656 1_555 C C1 MAN . A MAN 801 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? 
covale ? covale2 A CD1 TRP 11 A TRP 659 1_555 M C1 MAN . A MAN 811 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.492 ? 
covale ? covale3 B CD1 TRP 8 B TRP 656 1_555 W C1 MAN . B MAN 810 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? 
covale ? covale4 B CD1 TRP 11 B TRP 659 1_555 V C1 MAN . B MAN 809 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.491 ? 
#
_chem_comp.formula           'N O3 -1' 
_chem_comp.formula_weight    62.005 
_chem_comp.id                NO3 
_chem_comp.mon_nstd_flag     . 
_chem_comp.name              'NITRATE ION' 
_chem_comp.type              non-polymer 
_chem_comp.pdbx_synonyms     ? 
#
loop_
_chem_comp_bond.atom_id_1
_chem_comp_bond.atom_id_2
_chem_comp_bond.comp_id
_chem_comp_bond.value_order
_chem_comp_bond.pdbx_ordinal
_chem_comp_bond.pdbx_stereo_config
_chem_comp_bond.pdbx_aromatic_flag
N O1 NO3 doub 261 n n 
N O2 NO3 sing 262 n n 
N O3 NO3 sing 263 n n 
#
_atom_sites.entry_id                     8CKK 
_atom_sites.fract_transf_matrix[1][1]    0.01927 
_atom_sites.fract_transf_matrix[1][2]    0 
_atom_sites.fract_transf_matrix[1][3]    0 
_atom_sites.fract_transf_matrix[2][1]    0 
_atom_sites.fract_transf_matrix[2][2]    0.014631 
_atom_sites.fract_transf_matrix[2][3]    0 
_atom_sites.fract_transf_matrix[3][1]    0 
_atom_sites.fract_transf_matrix[3][2]    0 
_atom_sites.fract_transf_matrix[3][3]    0.011696 
_atom_sites.fract_transf_vector[1]       0 
_atom_sites.fract_transf_vector[2]       0 
_atom_sites.fract_transf_vector[3]       0 
#
loop_
_pdbx_nonpoly_scheme.asym_id
_pdbx_nonpoly_scheme.entity_id
_pdbx_nonpoly_scheme.mon_id
_pdbx_nonpoly_scheme.pdb_strand_id
_pdbx_nonpoly_scheme.ndb_seq_num
_pdbx_nonpoly_scheme.pdb_seq_num
_pdbx_nonpoly_scheme.auth_seq_num
_pdbx_nonpoly_scheme.pdb_mon_id
_pdbx_nonpoly_scheme.auth_mon_id
_pdbx_nonpoly_scheme.pdb_ins_code
C 2 MAN A 1 801 1 MAN MAN . 
D 3 NO3 A 1 802 1 NO3 NO3 . 
E 3 NO3 A 1 803 2 NO3 NO3 . 
F 3 NO3 A 1 804 3 NO3 NO3 . 
G 3 NO3 A 1 805 4 NO3 NO3 . 
H 3 NO3 A 1 806 5 NO3 NO3 . 
I 3 NO3 A 1 807 6 NO3 NO3 . 
J 3 NO3 A 1 808 7 NO3 NO3 . 
K 3 NO3 A 1 809 10 NO3 NO3 . 
L 3 NO3 A 1 810 17 NO3 NO3 . 
M 2 MAN A 1 811 1 MAN MAN . 
N 3 NO3 B 1 801 8 NO3 NO3 . 
O 3 NO3 B 1 802 9 NO3 NO3 . 
P 3 NO3 B 1 803 11 NO3 NO3 . 
Q 3 NO3 B 1 804 12 NO3 NO3 . 
R 3 NO3 B 1 805 13 NO3 NO3 . 
S 3 NO3 B 1 806 14 NO3 NO3 . 
T 3 NO3 B 1 807 15 NO3 NO3 . 
U 3 NO3 B 1 808 16 NO3 NO3 . 
V 2 MAN B 1 809 1 MAN MAN . 
W 2 MAN B 1 810 1 MAN MAN . 
X 4 HOH A 1 901 112 HOH HOH . 
X 4 HOH A 2 902 8 HOH HOH . 
X 4 HOH A 3 903 16 HOH HOH . 
X 4 HOH A 4 904 36 HOH HOH . 
X 4 HOH A 5 905 96 HOH HOH . 
X 4 HOH A 6 906 52 HOH HOH . 
X 4 HOH A 7 907 73 HOH HOH . 
X 4 HOH A 8 908 40 HOH HOH . 
X 4 HOH A 9 909 164 HOH HOH . 
X 4 HOH A 10 910 23 HOH HOH . 
X 4 HOH A 11 911 101 HOH HOH . 
X 4 HOH A 12 912 81 HOH HOH . 
X 4 HOH A 13 913 22 HOH HOH . 
X 4 HOH A 14 914 32 HOH HOH . 
X 4 HOH A 15 915 5 HOH HOH . 
X 4 HOH A 16 916 20 HOH HOH . 
X 4 HOH A 17 917 53 HOH HOH . 
X 4 HOH A 18 918 34 HOH HOH . 
X 4 HOH A 19 919 75 HOH HOH . 
X 4 HOH A 20 920 38 HOH HOH . 
X 4 HOH A 21 921 61 HOH HOH . 
X 4 HOH A 22 922 21 HOH HOH . 
X 4 HOH A 23 923 80 HOH HOH . 
X 4 HOH A 24 924 25 HOH HOH . 
X 4 HOH A 25 925 171 HOH HOH . 
X 4 HOH A 26 926 169 HOH HOH . 
X 4 HOH A 27 927 84 HOH HOH . 
X 4 HOH A 28 928 4 HOH HOH . 
X 4 HOH A 29 929 41 HOH HOH . 
X 4 HOH A 30 930 2 HOH HOH . 
X 4 HOH A 31 931 155 HOH HOH . 
X 4 HOH A 32 932 10 HOH HOH . 
X 4 HOH A 33 933 87 HOH HOH . 
X 4 HOH A 34 934 42 HOH HOH . 
X 4 HOH A 35 935 6 HOH HOH . 
X 4 HOH A 36 936 108 HOH HOH . 
X 4 HOH A 37 937 57 HOH HOH . 
X 4 HOH A 38 938 175 HOH HOH . 
X 4 HOH A 39 939 82 HOH HOH . 
X 4 HOH A 40 940 55 HOH HOH . 
X 4 HOH A 41 941 173 HOH HOH . 
X 4 HOH A 42 942 13 HOH HOH . 
X 4 HOH A 43 943 39 HOH HOH . 
X 4 HOH A 44 944 14 HOH HOH . 
X 4 HOH A 45 945 99 HOH HOH . 
X 4 HOH A 46 946 30 HOH HOH . 
X 4 HOH A 47 947 56 HOH HOH . 
X 4 HOH A 48 948 35 HOH HOH . 
X 4 HOH A 49 949 125 HOH HOH . 
X 4 HOH A 50 950 83 HOH HOH . 
X 4 HOH A 51 951 72 HOH HOH . 
X 4 HOH A 52 952 131 HOH HOH . 
X 4 HOH A 53 953 94 HOH HOH . 
X 4 HOH A 54 954 127 HOH HOH . 
X 4 HOH A 55 955 116 HOH HOH . 
X 4 HOH A 56 956 12 HOH HOH . 
X 4 HOH A 57 957 63 HOH HOH . 
X 4 HOH A 58 958 113 HOH HOH . 
X 4 HOH A 59 959 95 HOH HOH . 
X 4 HOH A 60 960 29 HOH HOH . 
X 4 HOH A 61 961 19 HOH HOH . 
X 4 HOH A 62 962 18 HOH HOH . 
X 4 HOH A 63 963 97 HOH HOH . 
X 4 HOH A 64 964 31 HOH HOH . 
X 4 HOH A 65 965 115 HOH HOH . 
X 4 HOH A 66 966 43 HOH HOH . 
X 4 HOH A 67 967 26 HOH HOH . 
X 4 HOH A 68 968 74 HOH HOH . 
X 4 HOH A 69 969 138 HOH HOH . 
X 4 HOH A 70 970 178 HOH HOH . 
X 4 HOH A 71 971 130 HOH HOH . 
X 4 HOH A 72 972 170 HOH HOH . 
X 4 HOH A 73 973 9 HOH HOH . 
X 4 HOH A 74 974 172 HOH HOH . 
X 4 HOH A 75 975 27 HOH HOH . 
X 4 HOH A 76 976 159 HOH HOH . 
X 4 HOH A 77 977 46 HOH HOH . 
X 4 HOH A 78 978 49 HOH HOH . 
X 4 HOH A 79 979 65 HOH HOH . 
X 4 HOH A 80 980 180 HOH HOH . 
X 4 HOH A 81 981 91 HOH HOH . 
X 4 HOH A 82 982 165 HOH HOH . 
X 4 HOH A 83 983 132 HOH HOH . 
X 4 HOH A 84 984 68 HOH HOH . 
X 4 HOH A 85 985 143 HOH HOH . 
X 4 HOH A 86 986 60 HOH HOH . 
X 4 HOH A 87 987 145 HOH HOH . 
X 4 HOH A 88 988 168 HOH HOH . 
X 4 HOH A 89 989 150 HOH HOH . 
X 4 HOH A 90 990 33 HOH HOH . 
X 4 HOH A 91 991 77 HOH HOH . 
X 4 HOH A 92 992 176 HOH HOH . 
X 4 HOH A 93 993 109 HOH HOH . 
X 4 HOH A 94 994 62 HOH HOH . 
X 4 HOH A 95 995 50 HOH HOH . 
X 4 HOH A 96 996 64 HOH HOH . 
X 4 HOH A 97 997 152 HOH HOH . 
X 4 HOH A 98 998 156 HOH HOH . 
Y 4 HOH B 1 901 122 HOH HOH . 
Y 4 HOH B 2 902 28 HOH HOH . 
Y 4 HOH B 3 903 137 HOH HOH . 
Y 4 HOH B 4 904 1 HOH HOH . 
Y 4 HOH B 5 905 92 HOH HOH . 
Y 4 HOH B 6 906 139 HOH HOH . 
Y 4 HOH B 7 907 11 HOH HOH . 
Y 4 HOH B 8 908 106 HOH HOH . 
Y 4 HOH B 9 909 58 HOH HOH . 
Y 4 HOH B 10 910 3 HOH HOH . 
Y 4 HOH B 11 911 89 HOH HOH . 
Y 4 HOH B 12 912 69 HOH HOH . 
Y 4 HOH B 13 913 90 HOH HOH . 
Y 4 HOH B 14 914 111 HOH HOH . 
Y 4 HOH B 15 915 70 HOH HOH . 
Y 4 HOH B 16 916 120 HOH HOH . 
Y 4 HOH B 17 917 119 HOH HOH . 
Y 4 HOH B 18 918 7 HOH HOH . 
Y 4 HOH B 19 919 104 HOH HOH . 
Y 4 HOH B 20 920 51 HOH HOH . 
Y 4 HOH B 21 921 66 HOH HOH . 
Y 4 HOH B 22 922 17 HOH HOH . 
Y 4 HOH B 23 923 79 HOH HOH . 
Y 4 HOH B 24 924 166 HOH HOH . 
Y 4 HOH B 25 925 147 HOH HOH . 
Y 4 HOH B 26 926 140 HOH HOH . 
Y 4 HOH B 27 927 24 HOH HOH . 
Y 4 HOH B 28 928 86 HOH HOH . 
Y 4 HOH B 29 929 134 HOH HOH . 
Y 4 HOH B 30 930 105 HOH HOH . 
Y 4 HOH B 31 931 37 HOH HOH . 
Y 4 HOH B 32 932 54 HOH HOH . 
Y 4 HOH B 33 933 67 HOH HOH . 
Y 4 HOH B 34 934 100 HOH HOH . 
Y 4 HOH B 35 935 71 HOH HOH . 
Y 4 HOH B 36 936 121 HOH HOH . 
Y 4 HOH B 37 937 110 HOH HOH . 
Y 4 HOH B 38 938 118 HOH HOH . 
Y 4 HOH B 39 939 102 HOH HOH . 
Y 4 HOH B 40 940 85 HOH HOH . 
Y 4 HOH B 41 941 142 HOH HOH . 
Y 4 HOH B 42 942 45 HOH HOH . 
Y 4 HOH B 43 943 48 HOH HOH . 
Y 4 HOH B 44 944 59 HOH HOH . 
Y 4 HOH B 45 945 162 HOH HOH . 
Y 4 HOH B 46 946 114 HOH HOH . 
Y 4 HOH B 47 947 117 HOH HOH . 
Y 4 HOH B 48 948 126 HOH HOH . 
Y 4 HOH B 49 949 103 HOH HOH . 
Y 4 HOH B 50 950 163 HOH HOH . 
Y 4 HOH B 51 951 161 HOH HOH . 
Y 4 HOH B 52 952 123 HOH HOH . 
Y 4 HOH B 53 953 153 HOH HOH . 
Y 4 HOH B 54 954 76 HOH HOH . 
Y 4 HOH B 55 955 78 HOH HOH . 
Y 4 HOH B 56 956 158 HOH HOH . 
Y 4 HOH B 57 957 98 HOH HOH . 
Y 4 HOH B 58 958 179 HOH HOH . 
Y 4 HOH B 59 959 44 HOH HOH . 
Y 4 HOH B 60 960 47 HOH HOH . 
Y 4 HOH B 61 961 128 HOH HOH . 
Y 4 HOH B 62 962 15 HOH HOH . 
Y 4 HOH B 63 963 167 HOH HOH . 
Y 4 HOH B 64 964 107 HOH HOH . 
Y 4 HOH B 65 965 154 HOH HOH . 
Y 4 HOH B 66 966 149 HOH HOH . 
Y 4 HOH B 67 967 93 HOH HOH . 
Y 4 HOH B 68 968 88 HOH HOH . 
Y 4 HOH B 69 969 177 HOH HOH . 
Y 4 HOH B 70 970 144 HOH HOH . 
Y 4 HOH B 71 971 174 HOH HOH . 
#
loop_
_atom_site.group_PDB
_atom_site.id
_atom_site.type_symbol
_atom_site.label_atom_id
_atom_site.label_comp_id
_atom_site.label_seq_id
_atom_site.label_alt_id
_atom_site.pdbx_PDB_ins_code
_atom_site.label_asym_id
_atom_site.label_entity_id
_atom_site.Cartn_x
_atom_site.Cartn_y
_atom_site.Cartn_z
_atom_site.occupancy
_atom_site.B_iso_or_equiv
_atom_site.pdbx_formal_charge
_atom_site.auth_atom_id
_atom_site.auth_comp_id
_atom_site.auth_seq_id
_atom_site.auth_asym_id
_atom_site.pdbx_PDB_model_num
HETATM 1 N N NO3 . . . D 3 13.327 42.056 66.405 1 46.13 ? N NO3 802 A 1 
HETATM 2 O O1 NO3 . . . D 3 12.269 41.704 67.005 1 37.05 ? O1 NO3 802 A 1 
HETATM 3 O O2 NO3 . . . D 3 13.344 43.123 65.724 1 40.41 ? O2 NO3 802 A 1 
HETATM 4 O O3 NO3 . . . D 3 14.368 41.34 66.487 1 46.64 ? O3 NO3 802 A 1 
#
_model_server_stats.io_time_ms              15 
_model_server_stats.parse_time_ms           13 
_model_server_stats.create_model_time_ms    10 
_model_server_stats.query_time_ms           344 
_model_server_stats.encode_time_ms          9 
_model_server_stats.element_count           4 
#