data_8CKS # _model_server_result.job_id rwE9-cErlN--dfrfJHJp-A _model_server_result.datetime_utc '2025-01-10 10:45:47' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cks # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":601}' # _entry.id 8CKS # _exptl.entry_id 8CKS _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 298.486 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description "3,3'-commo-bis(1,2-dicarba-3-ferra-closo-dodecaborane)" _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 109.225 _cell.angle_gamma 90 _cell.entry_id 8CKS _cell.length_a 94.668 _cell.length_b 57.817 _cell.length_c 129.361 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CKS _symmetry.cell_setting ? _symmetry.Int_Tables_number 5 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 1 2 1' # _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 53 A CYS 53 1_555 A SG CYS 62 A CYS 62 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.155 ? disulf ? disulf2 A SG CYS 75 A CYS 75 1_555 A SG CYS 91 A CYS 91 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.376 ? disulf ? disulf3 A SG CYS 90 A CYS 90 1_555 A SG CYS 101 A CYS 101 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.495 ? disulf ? disulf4 A SG CYS 124 A CYS 124 1_555 A SG CYS 169 A CYS 169 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.618 ? disulf ? disulf5 A SG CYS 168 A CYS 168 1_555 A SG CYS 177 A CYS 177 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.405 ? disulf ? disulf6 A SG CYS 200 A CYS 200 1_555 A SG CYS 246 A CYS 246 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.134 ? disulf ? disulf7 A SG CYS 245 A CYS 245 1_555 A SG CYS 253 A CYS 253 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.485 ? disulf ? disulf8 A SG CYS 265 A CYS 265 1_555 A SG CYS 279 A CYS 279 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.612 ? disulf ? disulf9 A SG CYS 278 A CYS 278 1_555 A SG CYS 289 A CYS 289 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.583 ? disulf ? disulf10 A SG CYS 316 A CYS 316 1_555 A SG CYS 361 A CYS 361 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.502 ? disulf ? disulf11 A SG CYS 392 A CYS 392 1_555 A SG CYS 438 A CYS 438 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.269 ? disulf ? disulf12 A SG CYS 437 A CYS 437 1_555 A SG CYS 448 A CYS 448 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.214 ? disulf ? disulf13 A SG CYS 461 A CYS 461 1_555 A SG CYS 477 A CYS 477 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.077 ? disulf ? disulf14 A SG CYS 476 A CYS 476 1_555 A SG CYS 487 A CYS 487 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.456 ? disulf ? disulf15 A SG CYS 514 A CYS 514 1_555 A SG CYS 559 A CYS 559 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.309 ? disulf ? disulf16 A SG CYS 558 A CYS 558 1_555 A SG CYS 567 A CYS 567 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.711 ? # _chem_comp.formula 'C4 B18 Fe' _chem_comp.formula_weight 298.486 _chem_comp.id UZC _chem_comp.mon_nstd_flag . _chem_comp.name "3,3'-commo-bis(1,2-dicarba-3-ferra-closo-dodecaborane)" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 FE1 UZC sing 452 n n C1 B1 UZC sing 453 n n C1 B3 UZC sing 454 n n C1 B4 UZC sing 455 n n C1 C1E UZC sing 456 n n FE1 B1 UZC sing 457 n n FE1 B2 UZC sing 458 n n FE1 C1E UZC sing 459 n n FE1 C1A UZC sing 460 n n FE1 C1D UZC sing 461 n n FE1 B1A UZC sing 462 n n FE1 B1D UZC sing 463 n n FE1 B1E UZC sing 464 n n FE1 B2A UZC sing 465 n n B1 B2 UZC sing 466 n n B1 B4 UZC sing 467 n n B1 B5 UZC sing 468 n n B2 B5 UZC sing 469 n n B2 B1E UZC sing 470 n n B2 B5E UZC sing 471 n n B3 B4 UZC sing 472 n n B3 B6 UZC sing 473 n n B3 C1E UZC sing 474 n n B3 B4E UZC sing 475 n n B4 B5 UZC sing 476 n n B4 B6 UZC sing 477 n n B5 B6 UZC sing 478 n n B5 B5E UZC sing 479 n n B6 B4E UZC sing 480 n n B6 B5E UZC sing 481 n n C1E B1E UZC sing 482 n n C1E B4E UZC sing 483 n n C1A C1D UZC sing 484 n n C1A B1A UZC sing 485 n n C1A B4A UZC sing 486 n n C1A B3A UZC sing 487 n n C1D B1D UZC sing 488 n n C1D B3A UZC sing 489 n n C1D B4D UZC sing 490 n n B1A B2A UZC sing 491 n n B1A B4A UZC sing 492 n n B1A B5A UZC sing 493 n n B1D B2A UZC sing 494 n n B1D B4D UZC sing 495 n n B1D B5D UZC sing 496 n n B1E B4E UZC sing 497 n n B1E B5E UZC sing 498 n n B4E B5E UZC sing 499 n n B2A B5D UZC sing 500 n n B4A B3A UZC sing 501 n n B4A B5A UZC sing 502 n n B4A B6D UZC sing 503 n n B3A B4D UZC sing 504 n n B3A B6D UZC sing 505 n n B4D B5D UZC sing 506 n n B4D B6D UZC sing 507 n n B5A B5D UZC sing 508 n n B5A B6D UZC sing 509 n n # _atom_sites.entry_id 8CKS _atom_sites.fract_transf_matrix[1][1] 0.010563 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.003684 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.017296 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.008187 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 UZC A 1 601 597 UZC FSM . C 3 DMS A 1 602 599 DMS DMS . D 4 MYR A 1 603 601 MYR MYR . E 4 MYR A 1 604 604 MYR MYR . F 4 MYR A 1 605 605 MYR MYR . G 5 GOL A 1 606 606 GOL GOL . H 6 OCA A 1 607 607 OCA OCA . I 6 OCA A 1 608 608 OCA OCA . J 3 DMS A 1 609 609 DMS DMS . K 6 OCA A 1 610 610 OCA OCA . L 7 SO4 A 1 611 4 SO4 SO4 . M 7 SO4 A 1 612 5 SO4 SO4 . N 7 SO4 A 1 613 6 SO4 SO4 . O 7 SO4 A 1 614 7 SO4 SO4 . P 8 HOH A 1 701 22 HOH HOH . P 8 HOH A 2 702 97 HOH HOH . P 8 HOH A 3 703 40 HOH HOH . P 8 HOH A 4 704 82 HOH HOH . P 8 HOH A 5 705 12 HOH HOH . P 8 HOH A 6 706 127 HOH HOH . P 8 HOH A 7 707 87 HOH HOH . P 8 HOH A 8 708 61 HOH HOH . P 8 HOH A 9 709 115 HOH HOH . P 8 HOH A 10 710 58 HOH HOH . P 8 HOH A 11 711 36 HOH HOH . P 8 HOH A 12 712 98 HOH HOH . P 8 HOH A 13 713 106 HOH HOH . P 8 HOH A 14 714 99 HOH HOH . P 8 HOH A 15 715 34 HOH HOH . P 8 HOH A 16 716 93 HOH HOH . P 8 HOH A 17 717 73 HOH HOH . P 8 HOH A 18 718 77 HOH HOH . P 8 HOH A 19 719 17 HOH HOH . P 8 HOH A 20 720 33 HOH HOH . P 8 HOH A 21 721 8 HOH HOH . P 8 HOH A 22 722 27 HOH HOH . P 8 HOH A 23 723 37 HOH HOH . P 8 HOH A 24 724 31 HOH HOH . P 8 HOH A 25 725 23 HOH HOH . P 8 HOH A 26 726 52 HOH HOH . P 8 HOH A 27 727 74 HOH HOH . P 8 HOH A 28 728 119 HOH HOH . P 8 HOH A 29 729 90 HOH HOH . P 8 HOH A 30 730 9 HOH HOH . P 8 HOH A 31 731 54 HOH HOH . P 8 HOH A 32 732 100 HOH HOH . P 8 HOH A 33 733 110 HOH HOH . P 8 HOH A 34 734 67 HOH HOH . P 8 HOH A 35 735 38 HOH HOH . P 8 HOH A 36 736 19 HOH HOH . P 8 HOH A 37 737 129 HOH HOH . P 8 HOH A 38 738 7 HOH HOH . P 8 HOH A 39 739 92 HOH HOH . P 8 HOH A 40 740 137 HOH HOH . P 8 HOH A 41 741 125 HOH HOH . P 8 HOH A 42 742 109 HOH HOH . P 8 HOH A 43 743 141 HOH HOH . P 8 HOH A 44 744 120 HOH HOH . P 8 HOH A 45 745 46 HOH HOH . P 8 HOH A 46 746 11 HOH HOH . P 8 HOH A 47 747 83 HOH HOH . P 8 HOH A 48 748 48 HOH HOH . P 8 HOH A 49 749 14 HOH HOH . P 8 HOH A 50 750 26 HOH HOH . P 8 HOH A 51 751 86 HOH HOH . P 8 HOH A 52 752 139 HOH HOH . P 8 HOH A 53 753 20 HOH HOH . P 8 HOH A 54 754 64 HOH HOH . P 8 HOH A 55 755 68 HOH HOH . P 8 HOH A 56 756 4 HOH HOH . P 8 HOH A 57 757 116 HOH HOH . P 8 HOH A 58 758 32 HOH HOH . P 8 HOH A 59 759 108 HOH HOH . P 8 HOH A 60 760 59 HOH HOH . P 8 HOH A 61 761 24 HOH HOH . P 8 HOH A 62 762 41 HOH HOH . P 8 HOH A 63 763 111 HOH HOH . P 8 HOH A 64 764 42 HOH HOH . P 8 HOH A 65 765 39 HOH HOH . P 8 HOH A 66 766 105 HOH HOH . P 8 HOH A 67 767 3 HOH HOH . P 8 HOH A 68 768 122 HOH HOH . P 8 HOH A 69 769 6 HOH HOH . P 8 HOH A 70 770 140 HOH HOH . P 8 HOH A 71 771 113 HOH HOH . P 8 HOH A 72 772 101 HOH HOH . P 8 HOH A 73 773 130 HOH HOH . P 8 HOH A 74 774 84 HOH HOH . P 8 HOH A 75 775 60 HOH HOH . P 8 HOH A 76 776 21 HOH HOH . P 8 HOH A 77 777 69 HOH HOH . P 8 HOH A 78 778 29 HOH HOH . P 8 HOH A 79 779 16 HOH HOH . P 8 HOH A 80 780 56 HOH HOH . P 8 HOH A 81 781 13 HOH HOH . P 8 HOH A 82 782 107 HOH HOH . P 8 HOH A 83 783 30 HOH HOH . P 8 HOH A 84 784 43 HOH HOH . P 8 HOH A 85 785 142 HOH HOH . P 8 HOH A 86 786 131 HOH HOH . P 8 HOH A 87 787 5 HOH HOH . P 8 HOH A 88 788 35 HOH HOH . P 8 HOH A 89 789 45 HOH HOH . P 8 HOH A 90 790 2 HOH HOH . P 8 HOH A 91 791 50 HOH HOH . P 8 HOH A 92 792 94 HOH HOH . P 8 HOH A 93 793 134 HOH HOH . P 8 HOH A 94 794 49 HOH HOH . P 8 HOH A 95 795 18 HOH HOH . P 8 HOH A 96 796 114 HOH HOH . P 8 HOH A 97 797 55 HOH HOH . P 8 HOH A 98 798 53 HOH HOH . P 8 HOH A 99 799 91 HOH HOH . P 8 HOH A 100 800 128 HOH HOH . P 8 HOH A 101 801 123 HOH HOH . P 8 HOH A 102 802 28 HOH HOH . P 8 HOH A 103 803 70 HOH HOH . P 8 HOH A 104 804 15 HOH HOH . P 8 HOH A 105 805 104 HOH HOH . P 8 HOH A 106 806 47 HOH HOH . P 8 HOH A 107 807 1 HOH HOH . P 8 HOH A 108 808 72 HOH HOH . P 8 HOH A 109 809 89 HOH HOH . P 8 HOH A 110 810 112 HOH HOH . P 8 HOH A 111 811 117 HOH HOH . P 8 HOH A 112 812 132 HOH HOH . P 8 HOH A 113 813 85 HOH HOH . P 8 HOH A 114 814 65 HOH HOH . P 8 HOH A 115 815 138 HOH HOH . P 8 HOH A 116 816 103 HOH HOH . P 8 HOH A 117 817 51 HOH HOH . P 8 HOH A 118 818 66 HOH HOH . P 8 HOH A 119 819 118 HOH HOH . P 8 HOH A 120 820 10 HOH HOH . P 8 HOH A 121 821 44 HOH HOH . P 8 HOH A 122 822 62 HOH HOH . P 8 HOH A 123 823 95 HOH HOH . P 8 HOH A 124 824 63 HOH HOH . P 8 HOH A 125 825 75 HOH HOH . P 8 HOH A 126 826 88 HOH HOH . P 8 HOH A 127 827 25 HOH HOH . P 8 HOH A 128 828 121 HOH HOH . P 8 HOH A 129 829 136 HOH HOH . P 8 HOH A 130 830 57 HOH HOH . P 8 HOH A 131 831 102 HOH HOH . P 8 HOH A 132 832 79 HOH HOH . P 8 HOH A 133 833 126 HOH HOH . P 8 HOH A 134 834 124 HOH HOH . P 8 HOH A 135 835 78 HOH HOH . P 8 HOH A 136 836 135 HOH HOH . P 8 HOH A 137 837 76 HOH HOH . P 8 HOH A 138 838 80 HOH HOH . P 8 HOH A 139 839 96 HOH HOH . P 8 HOH A 140 840 71 HOH HOH . P 8 HOH A 141 841 133 HOH HOH . P 8 HOH A 142 842 81 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 UZC . . . B 2 -37.767 -10.045 2.538 1 82.74 0 C1 UZC 601 A 1 HETATM 2 FE FE1 UZC . . . B 2 -39.189 -10.724 1.149 1 85.61 0 FE1 UZC 601 A 1 HETATM 3 B B1 UZC . . . B 2 -38.512 -8.784 1.692 1 77.66 0 B1 UZC 601 A 1 HETATM 4 B B2 UZC . . . B 2 -40.267 -9.016 1.899 1 82.74 0 B2 UZC 601 A 1 HETATM 5 B B3 UZC . . . B 2 -37.97 -9.993 4.248 1 77.79 0 B3 UZC 601 A 1 HETATM 6 B B4 UZC . . . B 2 -37.776 -8.522 3.299 1 77.23 0 B4 UZC 601 A 1 HETATM 7 B B5 UZC . . . B 2 -39.378 -7.862 2.94 1 78.79 0 B5 UZC 601 A 1 HETATM 8 B B6 UZC . . . B 2 -39.045 -8.617 4.517 1 80.87 0 B6 UZC 601 A 1 HETATM 9 C C1E UZC . . . B 2 -38.848 -11.044 3.2 1 86.2 0 C1E UZC 601 A 1 HETATM 10 C C1A UZC . . . B 2 -39.889 -10.035 -0.707 1 84.28 0 C1A UZC 601 A 1 HETATM 11 C C1D UZC . . . B 2 -40.94 -11.016 0.032 1 84.74 0 C1D UZC 601 A 1 HETATM 12 B B1A UZC . . . B 2 -38.359 -10.745 -0.787 1 84.09 0 B1A UZC 601 A 1 HETATM 13 B B1D UZC . . . B 2 -40.192 -12.461 0.509 1 82.65 0 B1D UZC 601 A 1 HETATM 14 B B1E UZC . . . B 2 -40.421 -10.52 2.84 1 86.64 0 B1E UZC 601 A 1 HETATM 15 B B4E UZC . . . B 2 -39.699 -10.262 4.453 1 85.12 0 B4E UZC 601 A 1 HETATM 16 B B5E UZC . . . B 2 -40.58 -8.948 3.663 1 84.64 0 B5E UZC 601 A 1 HETATM 17 B B2A UZC . . . B 2 -38.501 -12.366 -0.052 1 84.44 0 B2A UZC 601 A 1 HETATM 18 B B4A UZC . . . B 2 -39.422 -10.657 -2.222 1 80.49 0 B4A UZC 601 A 1 HETATM 19 B B3A UZC . . . B 2 -41.09 -10.807 -1.672 1 81.61 0 B3A UZC 601 A 1 HETATM 20 B B4D UZC . . . B 2 -41.265 -12.391 -0.92 1 82.69 0 B4D UZC 601 A 1 HETATM 21 B B5A UZC . . . B 2 -38.578 -12.161 -1.836 1 84.5 0 B5A UZC 601 A 1 HETATM 22 B B5D UZC . . . B 2 -39.725 -13.248 -1.017 1 83.82 0 B5D UZC 601 A 1 HETATM 23 B B6D UZC . . . B 2 -40.271 -12.198 -2.378 1 81.14 0 B6D UZC 601 A 1 # _model_server_stats.io_time_ms 8 _model_server_stats.parse_time_ms 17 _model_server_stats.create_model_time_ms 10 _model_server_stats.query_time_ms 229 _model_server_stats.encode_time_ms 7 _model_server_stats.element_count 23 #