data_8CKT # _model_server_result.job_id RDMqkyA5LkXfCAyISy6HtA _model_server_result.datetime_utc '2024-11-13 10:34:13' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8ckt # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"C","auth_seq_id":602}' # _entry.id 8CKT # _exptl.entry_id 8CKT _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 408.159 _entity.id 3 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 2-[[3,5-bis(chloranyl)phenyl]carbamoylamino]-4-(trifluoromethyloxy)benzamide _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CKT _cell.length_a 79.25 _cell.length_b 79.25 _cell.length_c 204.28 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CKT _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 3 _struct_asym.id C _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id ND1 _struct_conn.ptnr1_label_comp_id HIS _struct_conn.ptnr1_label_seq_id 100 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id HIS _struct_conn.ptnr1_auth_seq_id 100 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C8M _struct_conn.ptnr2_label_comp_id FAD _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id FAD _struct_conn.ptnr2_auth_seq_id 601 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.404 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C15 H10 Cl2 F3 N3 O3' _chem_comp.formula_weight 408.159 _chem_comp.id V2F _chem_comp.mon_nstd_flag . _chem_comp.name 2-[[3,5-bis(chloranyl)phenyl]carbamoylamino]-4-(trifluoromethyloxy)benzamide _chem_comp.type non-polymer _chem_comp.pdbx_synonyms 2-[(3,5-dichlorophenyl)carbamoylamino]-4-(trifluoromethoxy)benzamide # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag F11 C9 V2F sing 449 n n O8 C9 V2F sing 450 n n O8 C7 V2F sing 451 n n C9 F10 V2F sing 452 n n C9 F12 V2F sing 453 n n C6 C7 V2F doub 454 n y C6 C5 V2F sing 455 n y C7 C13 V2F sing 456 n y C5 C4 V2F doub 457 n y C13 C14 V2F doub 458 n y CL25 C24 V2F sing 459 n n C4 C14 V2F sing 460 n y C4 C2 V2F sing 461 n n C14 N15 V2F sing 462 n n N1 C2 V2F sing 463 n n C24 C26 V2F doub 464 n y C24 C23 V2F sing 465 n y O17 C16 V2F doub 466 n n C26 C19 V2F sing 467 n y C2 O3 V2F doub 468 n n N15 C16 V2F sing 469 n n C16 N18 V2F sing 470 n n C23 C21 V2F doub 471 n y C19 N18 V2F sing 472 n n C19 C20 V2F doub 473 n y C21 C20 V2F sing 474 n y C21 CL22 V2F sing 475 n n N1 H1 V2F sing 476 n n N1 H2 V2F sing 477 n n C5 H3 V2F sing 478 n n C6 H4 V2F sing 479 n n C13 H5 V2F sing 480 n n C20 H6 V2F sing 481 n n C23 H7 V2F sing 482 n n N15 H8 V2F sing 483 n n N18 H9 V2F sing 484 n n C26 H10 V2F sing 485 n n # _atom_sites.entry_id 8CKT _atom_sites.fract_transf_matrix[1][1] 0.012618 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012618 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004895 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 FAD A 1 601 1 FAD FAD . C 3 V2F A 1 602 1 V2F I19 . D 4 HOH A 1 701 131 HOH HOH . D 4 HOH A 2 702 64 HOH HOH . D 4 HOH A 3 703 41 HOH HOH . D 4 HOH A 4 704 133 HOH HOH . D 4 HOH A 5 705 47 HOH HOH . D 4 HOH A 6 706 16 HOH HOH . D 4 HOH A 7 707 139 HOH HOH . D 4 HOH A 8 708 17 HOH HOH . D 4 HOH A 9 709 49 HOH HOH . D 4 HOH A 10 710 12 HOH HOH . D 4 HOH A 11 711 176 HOH HOH . D 4 HOH A 12 712 48 HOH HOH . D 4 HOH A 13 713 43 HOH HOH . D 4 HOH A 14 714 153 HOH HOH . D 4 HOH A 15 715 115 HOH HOH . D 4 HOH A 16 716 27 HOH HOH . D 4 HOH A 17 717 73 HOH HOH . D 4 HOH A 18 718 23 HOH HOH . D 4 HOH A 19 719 3 HOH HOH . D 4 HOH A 20 720 99 HOH HOH . D 4 HOH A 21 721 20 HOH HOH . D 4 HOH A 22 722 56 HOH HOH . D 4 HOH A 23 723 42 HOH HOH . D 4 HOH A 24 724 87 HOH HOH . D 4 HOH A 25 725 127 HOH HOH . D 4 HOH A 26 726 86 HOH HOH . D 4 HOH A 27 727 24 HOH HOH . D 4 HOH A 28 728 25 HOH HOH . D 4 HOH A 29 729 19 HOH HOH . D 4 HOH A 30 730 175 HOH HOH . D 4 HOH A 31 731 46 HOH HOH . D 4 HOH A 32 732 93 HOH HOH . D 4 HOH A 33 733 181 HOH HOH . D 4 HOH A 34 734 187 HOH HOH . D 4 HOH A 35 735 44 HOH HOH . D 4 HOH A 36 736 123 HOH HOH . D 4 HOH A 37 737 188 HOH HOH . D 4 HOH A 38 738 125 HOH HOH . D 4 HOH A 39 739 183 HOH HOH . D 4 HOH A 40 740 75 HOH HOH . D 4 HOH A 41 741 82 HOH HOH . D 4 HOH A 42 742 6 HOH HOH . D 4 HOH A 43 743 30 HOH HOH . D 4 HOH A 44 744 102 HOH HOH . D 4 HOH A 45 745 136 HOH HOH . D 4 HOH A 46 746 37 HOH HOH . D 4 HOH A 47 747 33 HOH HOH . D 4 HOH A 48 748 52 HOH HOH . D 4 HOH A 49 749 135 HOH HOH . D 4 HOH A 50 750 124 HOH HOH . D 4 HOH A 51 751 11 HOH HOH . D 4 HOH A 52 752 88 HOH HOH . D 4 HOH A 53 753 53 HOH HOH . D 4 HOH A 54 754 70 HOH HOH . D 4 HOH A 55 755 132 HOH HOH . D 4 HOH A 56 756 80 HOH HOH . D 4 HOH A 57 757 111 HOH HOH . D 4 HOH A 58 758 34 HOH HOH . D 4 HOH A 59 759 95 HOH HOH . D 4 HOH A 60 760 78 HOH HOH . D 4 HOH A 61 761 109 HOH HOH . D 4 HOH A 62 762 134 HOH HOH . D 4 HOH A 63 763 81 HOH HOH . D 4 HOH A 64 764 9 HOH HOH . D 4 HOH A 65 765 170 HOH HOH . D 4 HOH A 66 766 150 HOH HOH . D 4 HOH A 67 767 118 HOH HOH . D 4 HOH A 68 768 110 HOH HOH . D 4 HOH A 69 769 85 HOH HOH . D 4 HOH A 70 770 68 HOH HOH . D 4 HOH A 71 771 189 HOH HOH . D 4 HOH A 72 772 121 HOH HOH . D 4 HOH A 73 773 129 HOH HOH . D 4 HOH A 74 774 8 HOH HOH . D 4 HOH A 75 775 105 HOH HOH . D 4 HOH A 76 776 21 HOH HOH . D 4 HOH A 77 777 174 HOH HOH . D 4 HOH A 78 778 79 HOH HOH . D 4 HOH A 79 779 173 HOH HOH . D 4 HOH A 80 780 172 HOH HOH . D 4 HOH A 81 781 72 HOH HOH . D 4 HOH A 82 782 98 HOH HOH . D 4 HOH A 83 783 128 HOH HOH . D 4 HOH A 84 784 5 HOH HOH . D 4 HOH A 85 785 35 HOH HOH . D 4 HOH A 86 786 155 HOH HOH . D 4 HOH A 87 787 130 HOH HOH . D 4 HOH A 88 788 112 HOH HOH . D 4 HOH A 89 789 140 HOH HOH . D 4 HOH A 90 790 45 HOH HOH . D 4 HOH A 91 791 94 HOH HOH . D 4 HOH A 92 792 119 HOH HOH . D 4 HOH A 93 793 36 HOH HOH . D 4 HOH A 94 794 74 HOH HOH . D 4 HOH A 95 795 31 HOH HOH . D 4 HOH A 96 796 13 HOH HOH . D 4 HOH A 97 797 83 HOH HOH . D 4 HOH A 98 798 104 HOH HOH . D 4 HOH A 99 799 96 HOH HOH . D 4 HOH A 100 800 182 HOH HOH . D 4 HOH A 101 801 108 HOH HOH . D 4 HOH A 102 802 145 HOH HOH . D 4 HOH A 103 803 66 HOH HOH . D 4 HOH A 104 804 32 HOH HOH . D 4 HOH A 105 805 63 HOH HOH . D 4 HOH A 106 806 113 HOH HOH . D 4 HOH A 107 807 103 HOH HOH . D 4 HOH A 108 808 71 HOH HOH . D 4 HOH A 109 809 101 HOH HOH . D 4 HOH A 110 810 29 HOH HOH . D 4 HOH A 111 811 2 HOH HOH . D 4 HOH A 112 812 100 HOH HOH . D 4 HOH A 113 813 57 HOH HOH . D 4 HOH A 114 814 152 HOH HOH . D 4 HOH A 115 815 126 HOH HOH . D 4 HOH A 116 816 10 HOH HOH . D 4 HOH A 117 817 195 HOH HOH . D 4 HOH A 118 818 59 HOH HOH . D 4 HOH A 119 819 58 HOH HOH . D 4 HOH A 120 820 1 HOH HOH . D 4 HOH A 121 821 51 HOH HOH . D 4 HOH A 122 822 55 HOH HOH . D 4 HOH A 123 823 138 HOH HOH . D 4 HOH A 124 824 76 HOH HOH . D 4 HOH A 125 825 54 HOH HOH . D 4 HOH A 126 826 40 HOH HOH . D 4 HOH A 127 827 137 HOH HOH . D 4 HOH A 128 828 14 HOH HOH . D 4 HOH A 129 829 142 HOH HOH . D 4 HOH A 130 830 120 HOH HOH . D 4 HOH A 131 831 91 HOH HOH . D 4 HOH A 132 832 65 HOH HOH . D 4 HOH A 133 833 178 HOH HOH . D 4 HOH A 134 834 60 HOH HOH . D 4 HOH A 135 835 191 HOH HOH . D 4 HOH A 136 836 147 HOH HOH . D 4 HOH A 137 837 22 HOH HOH . D 4 HOH A 138 838 69 HOH HOH . D 4 HOH A 139 839 38 HOH HOH . D 4 HOH A 140 840 186 HOH HOH . D 4 HOH A 141 841 160 HOH HOH . D 4 HOH A 142 842 107 HOH HOH . D 4 HOH A 143 843 50 HOH HOH . D 4 HOH A 144 844 149 HOH HOH . D 4 HOH A 145 845 84 HOH HOH . D 4 HOH A 146 846 18 HOH HOH . D 4 HOH A 147 847 62 HOH HOH . D 4 HOH A 148 848 148 HOH HOH . D 4 HOH A 149 849 26 HOH HOH . D 4 HOH A 150 850 165 HOH HOH . D 4 HOH A 151 851 117 HOH HOH . D 4 HOH A 152 852 39 HOH HOH . D 4 HOH A 153 853 77 HOH HOH . D 4 HOH A 154 854 67 HOH HOH . D 4 HOH A 155 855 97 HOH HOH . D 4 HOH A 156 856 141 HOH HOH . D 4 HOH A 157 857 146 HOH HOH . D 4 HOH A 158 858 61 HOH HOH . D 4 HOH A 159 859 164 HOH HOH . D 4 HOH A 160 860 156 HOH HOH . D 4 HOH A 161 861 190 HOH HOH . D 4 HOH A 162 862 171 HOH HOH . D 4 HOH A 163 863 15 HOH HOH . D 4 HOH A 164 864 158 HOH HOH . D 4 HOH A 165 865 106 HOH HOH . D 4 HOH A 166 866 7 HOH HOH . D 4 HOH A 167 867 114 HOH HOH . D 4 HOH A 168 868 163 HOH HOH . D 4 HOH A 169 869 179 HOH HOH . D 4 HOH A 170 870 92 HOH HOH . D 4 HOH A 171 871 28 HOH HOH . D 4 HOH A 172 872 205 HOH HOH . D 4 HOH A 173 873 180 HOH HOH . D 4 HOH A 174 874 151 HOH HOH . D 4 HOH A 175 875 199 HOH HOH . D 4 HOH A 176 876 168 HOH HOH . D 4 HOH A 177 877 200 HOH HOH . D 4 HOH A 178 878 4 HOH HOH . D 4 HOH A 179 879 201 HOH HOH . D 4 HOH A 180 880 116 HOH HOH . D 4 HOH A 181 881 169 HOH HOH . D 4 HOH A 182 882 192 HOH HOH . D 4 HOH A 183 883 196 HOH HOH . D 4 HOH A 184 884 161 HOH HOH . D 4 HOH A 185 885 193 HOH HOH . D 4 HOH A 186 886 208 HOH HOH . D 4 HOH A 187 887 177 HOH HOH . D 4 HOH A 188 888 207 HOH HOH . D 4 HOH A 189 889 203 HOH HOH . D 4 HOH A 190 890 184 HOH HOH . D 4 HOH A 191 891 154 HOH HOH . D 4 HOH A 192 892 198 HOH HOH . D 4 HOH A 193 893 90 HOH HOH . D 4 HOH A 194 894 162 HOH HOH . D 4 HOH A 195 895 204 HOH HOH . D 4 HOH A 196 896 89 HOH HOH . D 4 HOH A 197 897 144 HOH HOH . D 4 HOH A 198 898 202 HOH HOH . D 4 HOH A 199 899 185 HOH HOH . D 4 HOH A 200 900 157 HOH HOH . D 4 HOH A 201 901 159 HOH HOH . D 4 HOH A 202 902 197 HOH HOH . D 4 HOH A 203 903 166 HOH HOH . D 4 HOH A 204 904 143 HOH HOH . D 4 HOH A 205 905 206 HOH HOH . D 4 HOH A 206 906 194 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C2 V2F . . . C 3 17.96 -9.005 14.51 1 44.44 ? C2 V2F 602 A 1 HETATM 2 N N1 V2F . . . C 3 16.774 -9.515 14.214 1 48.94 ? N1 V2F 602 A 1 HETATM 3 C C4 V2F . . . C 3 19.167 -9.735 14.003 1 40.71 ? C4 V2F 602 A 1 HETATM 4 C C5 V2F . . . C 3 18.99 -11.004 13.446 1 39.09 ? C5 V2F 602 A 1 HETATM 5 C C6 V2F . . . C 3 20.056 -11.696 12.901 1 40.23 ? C6 V2F 602 A 1 HETATM 6 C C7 V2F . . . C 3 21.317 -11.123 12.902 1 41.11 ? C7 V2F 602 A 1 HETATM 7 C C9 V2F . . . C 3 23.206 -12.505 12.782 1 51.95 ? C9 V2F 602 A 1 HETATM 8 C C13 V2F . . . C 3 21.529 -9.871 13.464 1 36.57 ? C13 V2F 602 A 1 HETATM 9 C C14 V2F . . . C 3 20.462 -9.157 14.015 1 37.68 ? C14 V2F 602 A 1 HETATM 10 C C16 V2F . . . C 3 21.81 -7.133 14.575 1 31.83 ? C16 V2F 602 A 1 HETATM 11 C C19 V2F . . . C 3 22.521 -4.743 14.763 1 29.96 ? C19 V2F 602 A 1 HETATM 12 C C20 V2F . . . C 3 22.049 -3.477 15.089 1 29.47 ? C20 V2F 602 A 1 HETATM 13 C C21 V2F . . . C 3 22.911 -2.398 14.997 1 33.25 ? C21 V2F 602 A 1 HETATM 14 C C23 V2F . . . C 3 24.227 -2.533 14.584 1 32.81 ? C23 V2F 602 A 1 HETATM 15 C C24 V2F . . . C 3 24.668 -3.807 14.26 1 33.09 ? C24 V2F 602 A 1 HETATM 16 O O3 V2F . . . C 3 18.086 -7.977 15.19 1 43.85 ? O3 V2F 602 A 1 HETATM 17 O O8 V2F . . . C 3 22.336 -11.717 12.159 1 46.85 ? O8 V2F 602 A 1 HETATM 18 F F10 V2F . . . C 3 22.598 -13.619 13.181 1 55.73 ? F10 V2F 602 A 1 HETATM 19 F F11 V2F . . . C 3 24.192 -12.826 11.944 1 50.44 ? F11 V2F 602 A 1 HETATM 20 F F12 V2F . . . C 3 23.758 -11.945 13.857 1 51.4 ? F12 V2F 602 A 1 HETATM 21 N N15 V2F . . . C 3 20.646 -7.854 14.55 1 33.21 ? N15 V2F 602 A 1 HETATM 22 O O17 V2F . . . C 3 22.917 -7.607 14.302 1 34.6 ? O17 V2F 602 A 1 HETATM 23 N N18 V2F . . . C 3 21.599 -5.817 14.902 1 30.76 ? N18 V2F 602 A 1 HETATM 24 CL CL22 V2F . . . C 3 22.307 -0.814 15.403 1 33.34 ? CL22 V2F 602 A 1 HETATM 25 CL CL25 V2F . . . C 3 26.319 -4.026 13.732 1 35.79 ? CL25 V2F 602 A 1 HETATM 26 C C26 V2F . . . C 3 23.842 -4.915 14.34 1 30.01 ? C26 V2F 602 A 1 # _model_server_stats.io_time_ms 89 _model_server_stats.parse_time_ms 12 _model_server_stats.create_model_time_ms 5 _model_server_stats.query_time_ms 299 _model_server_stats.encode_time_ms 2 _model_server_stats.element_count 26 #