data_8CL5 # _model_server_result.job_id 1VYnPpTgKdrcxPgAN1mQHw _model_server_result.datetime_utc '2024-11-05 11:03:31' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cl5 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"E","auth_seq_id":204}' # _entry.id 8CL5 # _exptl.entry_id 8CL5 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 22.99 _entity.id 4 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description 'SODIUM ION' _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CL5 _cell.length_a 77.92 _cell.length_b 77.92 _cell.length_c 37.64 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CL5 _symmetry.cell_setting ? _symmetry.Int_Tables_number 96 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 43 21 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 E N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf ? disulf1 A SG CYS 6 A CYS 6 1_555 A SG CYS 127 A CYS 127 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.991 ? disulf ? disulf2 A SG CYS 30 A CYS 30 1_555 A SG CYS 115 A CYS 115 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.006 ? disulf ? disulf3 A SG CYS 64 A CYS 64 1_555 A SG CYS 80 A CYS 80 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.019 ? disulf ? disulf4 A SG CYS 76 A CYS 76 1_555 A SG CYS 94 A CYS 94 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.021 ? metalc ? metalc1 A O GLY 49 A GLY 49 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.836 ? metalc ? metalc2 A OG1 THR 51 A THR 51 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.637 ? metalc ? metalc3 A O TYR 53 A TYR 53 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.876 ? metalc ? metalc4 A OD2 ASP 66 A ASP 66 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.727 ? metalc ? metalc5 A OG1 THR 69 A THR 69 1_555 F NA NA . A NA 205 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 3.07 ? metalc ? metalc6 A OG SER 91 A SER 91 1_555 E NA NA . A NA 204 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.883 ? # _chem_comp.formula 'Na 1' _chem_comp.formula_weight 22.99 _chem_comp.id NA _chem_comp.mon_nstd_flag . _chem_comp.name 'SODIUM ION' _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # _atom_sites.entry_id 8CL5 _atom_sites.fract_transf_matrix[1][1] 0.012834 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.012834 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.026567 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 EDO A 1 201 1136 EDO EDO . C 3 CL A 1 202 1137 CL CL . D 3 CL A 1 203 1139 CL CL . E 4 NA A 1 204 1145 NA NA . F 4 NA A 1 205 1146 NA NA . G 5 1PE A 1 206 1147 1PE 1PE . H 6 HOH A 1 301 68 HOH HOH . H 6 HOH A 2 302 98 HOH HOH . H 6 HOH A 3 303 109 HOH HOH . H 6 HOH A 4 304 111 HOH HOH . H 6 HOH A 5 305 22 HOH HOH . H 6 HOH A 6 306 107 HOH HOH . H 6 HOH A 7 307 103 HOH HOH . H 6 HOH A 8 308 31 HOH HOH . H 6 HOH A 9 309 50 HOH HOH . H 6 HOH A 10 310 95 HOH HOH . H 6 HOH A 11 311 71 HOH HOH . H 6 HOH A 12 312 38 HOH HOH . H 6 HOH A 13 313 51 HOH HOH . H 6 HOH A 14 314 3 HOH HOH . H 6 HOH A 15 315 30 HOH HOH . H 6 HOH A 16 316 14 HOH HOH . H 6 HOH A 17 317 12 HOH HOH . H 6 HOH A 18 318 24 HOH HOH . H 6 HOH A 19 319 114 HOH HOH . H 6 HOH A 20 320 23 HOH HOH . H 6 HOH A 21 321 1 HOH HOH . H 6 HOH A 22 322 13 HOH HOH . H 6 HOH A 23 323 72 HOH HOH . H 6 HOH A 24 324 32 HOH HOH . H 6 HOH A 25 325 45 HOH HOH . H 6 HOH A 26 326 35 HOH HOH . H 6 HOH A 27 327 99 HOH HOH . H 6 HOH A 28 328 64 HOH HOH . H 6 HOH A 29 329 59 HOH HOH . H 6 HOH A 30 330 66 HOH HOH . H 6 HOH A 31 331 106 HOH HOH . H 6 HOH A 32 332 7 HOH HOH . H 6 HOH A 33 333 73 HOH HOH . H 6 HOH A 34 334 74 HOH HOH . H 6 HOH A 35 335 100 HOH HOH . H 6 HOH A 36 336 16 HOH HOH . H 6 HOH A 37 337 36 HOH HOH . H 6 HOH A 38 338 41 HOH HOH . H 6 HOH A 39 339 58 HOH HOH . H 6 HOH A 40 340 87 HOH HOH . H 6 HOH A 41 341 77 HOH HOH . H 6 HOH A 42 342 69 HOH HOH . H 6 HOH A 43 343 34 HOH HOH . H 6 HOH A 44 344 28 HOH HOH . H 6 HOH A 45 345 9 HOH HOH . H 6 HOH A 46 346 17 HOH HOH . H 6 HOH A 47 347 81 HOH HOH . H 6 HOH A 48 348 47 HOH HOH . H 6 HOH A 49 349 65 HOH HOH . H 6 HOH A 50 350 75 HOH HOH . H 6 HOH A 51 351 10 HOH HOH . H 6 HOH A 52 352 25 HOH HOH . H 6 HOH A 53 353 6 HOH HOH . H 6 HOH A 54 354 20 HOH HOH . H 6 HOH A 55 355 48 HOH HOH . H 6 HOH A 56 356 80 HOH HOH . H 6 HOH A 57 357 113 HOH HOH . H 6 HOH A 58 358 21 HOH HOH . H 6 HOH A 59 359 55 HOH HOH . H 6 HOH A 60 360 37 HOH HOH . H 6 HOH A 61 361 112 HOH HOH . H 6 HOH A 62 362 88 HOH HOH . H 6 HOH A 63 363 18 HOH HOH . H 6 HOH A 64 364 62 HOH HOH . H 6 HOH A 65 365 44 HOH HOH . H 6 HOH A 66 366 11 HOH HOH . H 6 HOH A 67 367 15 HOH HOH . H 6 HOH A 68 368 78 HOH HOH . H 6 HOH A 69 369 43 HOH HOH . H 6 HOH A 70 370 49 HOH HOH . H 6 HOH A 71 371 52 HOH HOH . H 6 HOH A 72 372 26 HOH HOH . H 6 HOH A 73 373 8 HOH HOH . H 6 HOH A 74 374 27 HOH HOH . H 6 HOH A 75 375 39 HOH HOH . H 6 HOH A 76 376 90 HOH HOH . H 6 HOH A 77 377 83 HOH HOH . H 6 HOH A 78 378 97 HOH HOH . H 6 HOH A 79 379 2 HOH HOH . H 6 HOH A 80 380 61 HOH HOH . H 6 HOH A 81 381 94 HOH HOH . H 6 HOH A 82 382 67 HOH HOH . H 6 HOH A 83 383 46 HOH HOH . H 6 HOH A 84 384 19 HOH HOH . H 6 HOH A 85 385 82 HOH HOH . H 6 HOH A 86 386 29 HOH HOH . H 6 HOH A 87 387 105 HOH HOH . H 6 HOH A 88 388 110 HOH HOH . H 6 HOH A 89 389 33 HOH HOH . H 6 HOH A 90 390 93 HOH HOH . H 6 HOH A 91 391 101 HOH HOH . H 6 HOH A 92 392 5 HOH HOH . H 6 HOH A 93 393 4 HOH HOH . H 6 HOH A 94 394 86 HOH HOH . H 6 HOH A 95 395 79 HOH HOH . H 6 HOH A 96 396 104 HOH HOH . H 6 HOH A 97 397 115 HOH HOH . H 6 HOH A 98 398 102 HOH HOH . H 6 HOH A 99 399 96 HOH HOH . H 6 HOH A 100 400 57 HOH HOH . H 6 HOH A 101 401 89 HOH HOH . H 6 HOH A 102 402 92 HOH HOH . H 6 HOH A 103 403 91 HOH HOH . H 6 HOH A 104 404 63 HOH HOH . H 6 HOH A 105 405 70 HOH HOH . H 6 HOH A 106 406 53 HOH HOH . H 6 HOH A 107 407 42 HOH HOH . H 6 HOH A 108 408 85 HOH HOH . H 6 HOH A 109 409 56 HOH HOH . H 6 HOH A 110 410 108 HOH HOH . H 6 HOH A 111 411 84 HOH HOH . H 6 HOH A 112 412 40 HOH HOH . H 6 HOH A 113 413 54 HOH HOH . H 6 HOH A 114 414 60 HOH HOH . # _atom_site.group_PDB HETATM _atom_site.id 1 _atom_site.type_symbol NA _atom_site.label_atom_id NA _atom_site.label_comp_id NA _atom_site.label_seq_id . _atom_site.label_alt_id . _atom_site.pdbx_PDB_ins_code . _atom_site.label_asym_id E _atom_site.label_entity_id 4 _atom_site.Cartn_x 1.637 _atom_site.Cartn_y 16.326 _atom_site.Cartn_z 19.568 _atom_site.occupancy 1 _atom_site.B_iso_or_equiv 23.4 _atom_site.pdbx_formal_charge ? _atom_site.auth_atom_id NA _atom_site.auth_comp_id NA _atom_site.auth_seq_id 204 _atom_site.auth_asym_id A _atom_site.pdbx_PDB_model_num 1 # _model_server_stats.io_time_ms 10 _model_server_stats.parse_time_ms 11 _model_server_stats.create_model_time_ms 2 _model_server_stats.query_time_ms 276 _model_server_stats.encode_time_ms 12 _model_server_stats.element_count 1 #