data_8CL7 # _model_server_result.job_id 0rhI4OWxQcuT-wF07L63hA _model_server_result.datetime_utc '2024-11-13 04:25:51' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cl7 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"B","auth_seq_id":301}' # _entry.id 8CL7 # _exptl.entry_id 8CL7 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 284.436 _entity.id 2 _entity.src_method syn _entity.type non-polymer _entity.pdbx_description RETINAL _entity.pdbx_number_of_molecules 1 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.entry_id 8CL7 _cell.length_a 41.46 _cell.length_b 84.89 _cell.length_c 234.95 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CL7 _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'I 2 2 2' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # _struct_asym.details ? _struct_asym.entity_id 2 _struct_asym.id B _struct_asym.pdbx_modified N _struct_asym.pdbx_blank_PDB_chainid_flag N # _struct_conn.conn_type_id covale _struct_conn.details ? _struct_conn.id covale1 _struct_conn.ptnr1_label_asym_id A _struct_conn.ptnr1_label_atom_id NZ _struct_conn.ptnr1_label_comp_id LYS _struct_conn.ptnr1_label_seq_id 248 _struct_conn.ptnr1_auth_asym_id A _struct_conn.ptnr1_auth_comp_id LYS _struct_conn.ptnr1_auth_seq_id 255 _struct_conn.ptnr1_symmetry 1_555 _struct_conn.ptnr2_label_asym_id B _struct_conn.ptnr2_label_atom_id C15 _struct_conn.ptnr2_label_comp_id RET _struct_conn.ptnr2_label_seq_id . _struct_conn.ptnr2_auth_asym_id A _struct_conn.ptnr2_auth_comp_id RET _struct_conn.ptnr2_auth_seq_id 301 _struct_conn.ptnr2_symmetry 1_555 _struct_conn.pdbx_ptnr1_PDB_ins_code ? _struct_conn.pdbx_ptnr1_label_alt_id ? _struct_conn.pdbx_ptnr1_standard_comp_id ? _struct_conn.pdbx_ptnr2_PDB_ins_code ? _struct_conn.pdbx_ptnr2_label_alt_id ? _struct_conn.pdbx_ptnr3_PDB_ins_code ? _struct_conn.pdbx_ptnr3_label_alt_id ? _struct_conn.pdbx_ptnr3_label_asym_id ? _struct_conn.pdbx_ptnr3_label_atom_id ? _struct_conn.pdbx_ptnr3_label_comp_id ? _struct_conn.pdbx_ptnr3_label_seq_id ? _struct_conn.pdbx_PDB_id ? _struct_conn.pdbx_dist_value 1.354 _struct_conn.pdbx_value_order ? # _chem_comp.formula 'C20 H28 O' _chem_comp.formula_weight 284.436 _chem_comp.id RET _chem_comp.mon_nstd_flag . _chem_comp.name RETINAL _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag C1 C2 RET sing 325 n n C1 C6 RET sing 326 n n C1 C16 RET sing 327 n n C1 C17 RET sing 328 n n C2 C3 RET sing 329 n n C2 H21 RET sing 330 n n C2 H22 RET sing 331 n n C3 C4 RET sing 332 n n C3 H31 RET sing 333 n n C3 H32 RET sing 334 n n C4 C5 RET sing 335 n n C4 H41 RET sing 336 n n C4 H42 RET sing 337 n n C5 C6 RET doub 338 n n C5 C18 RET sing 339 n n C6 C7 RET sing 340 n n C7 C8 RET doub 341 e n C7 H7 RET sing 342 n n C8 C9 RET sing 343 n n C8 H8 RET sing 344 n n C9 C10 RET doub 345 e n C9 C19 RET sing 346 n n C10 C11 RET sing 347 n n C10 H10 RET sing 348 n n C11 C12 RET doub 349 e n C11 H11 RET sing 350 n n C12 C13 RET sing 351 n n C12 H12 RET sing 352 n n C13 C14 RET doub 353 e n C13 C20 RET sing 354 n n C14 C15 RET sing 355 n n C14 H14 RET sing 356 n n C15 O1 RET doub 357 n n C15 H15 RET sing 358 n n C16 H161 RET sing 359 n n C16 H162 RET sing 360 n n C16 H163 RET sing 361 n n C17 H171 RET sing 362 n n C17 H172 RET sing 363 n n C17 H173 RET sing 364 n n C18 H181 RET sing 365 n n C18 H182 RET sing 366 n n C18 H183 RET sing 367 n n C19 H191 RET sing 368 n n C19 H192 RET sing 369 n n C19 H193 RET sing 370 n n C20 H201 RET sing 371 n n C20 H202 RET sing 372 n n C20 H203 RET sing 373 n n # _atom_sites.entry_id 8CL7 _atom_sites.fract_transf_matrix[1][1] 0.02412 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.01178 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.004256 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 RET A 1 301 301 RET RET . C 3 LFA A 1 302 302 LFA LFA . D 3 LFA A 1 303 303 LFA LFA . E 3 LFA A 1 304 304 LFA LFA . F 3 LFA A 1 305 305 LFA LFA . G 3 LFA A 1 306 307 LFA LFA . H 3 LFA A 1 307 308 LFA LFA . I 3 LFA A 1 308 310 LFA LFA . J 3 LFA A 1 309 311 LFA LFA . K 3 LFA A 1 310 312 LFA LFA . L 3 LFA A 1 311 313 LFA LFA . M 3 LFA A 1 312 314 LFA LFA . N 3 LFA A 1 313 315 LFA LFA . O 3 LFA A 1 314 317 LFA LFA . P 3 LFA A 1 315 318 LFA LFA . Q 3 LFA A 1 316 319 LFA LFA . R 3 LFA A 1 317 320 LFA LFA . S 3 LFA A 1 318 322 LFA LFA . T 3 LFA A 1 319 323 LFA LFA . U 3 LFA A 1 320 324 LFA LFA . V 3 LFA A 1 321 325 LFA LFA . W 3 LFA A 1 322 326 LFA LFA . X 3 LFA A 1 323 327 LFA LFA . Y 4 HOH A 1 401 19 HOH HOH . Y 4 HOH A 2 402 76 HOH HOH . Y 4 HOH A 3 403 58 HOH HOH . Y 4 HOH A 4 404 101 HOH HOH . Y 4 HOH A 5 405 57 HOH HOH . Y 4 HOH A 6 406 29 HOH HOH . Y 4 HOH A 7 407 80 HOH HOH . Y 4 HOH A 8 408 20 HOH HOH . Y 4 HOH A 9 409 45 HOH HOH . Y 4 HOH A 10 410 100 HOH HOH . Y 4 HOH A 11 411 2 HOH HOH . Y 4 HOH A 12 412 1 HOH HOH . Y 4 HOH A 13 413 110 HOH HOH . Y 4 HOH A 14 414 105 HOH HOH . Y 4 HOH A 15 415 35 HOH HOH . Y 4 HOH A 16 416 56 HOH HOH . Y 4 HOH A 17 417 7 HOH HOH . Y 4 HOH A 18 418 28 HOH HOH . Y 4 HOH A 19 419 4 HOH HOH . Y 4 HOH A 20 420 51 HOH HOH . Y 4 HOH A 21 421 8 HOH HOH . Y 4 HOH A 22 422 97 HOH HOH . Y 4 HOH A 23 423 9 HOH HOH . Y 4 HOH A 24 424 37 HOH HOH . Y 4 HOH A 25 425 3 HOH HOH . Y 4 HOH A 26 426 6 HOH HOH . Y 4 HOH A 27 427 60 HOH HOH . Y 4 HOH A 28 428 10 HOH HOH . Y 4 HOH A 29 429 39 HOH HOH . Y 4 HOH A 30 430 5 HOH HOH . Y 4 HOH A 31 431 82 HOH HOH . Y 4 HOH A 32 432 89 HOH HOH . Y 4 HOH A 33 433 108 HOH HOH . Y 4 HOH A 34 434 13 HOH HOH . Y 4 HOH A 35 435 31 HOH HOH . Y 4 HOH A 36 436 36 HOH HOH . Y 4 HOH A 37 437 73 HOH HOH . Y 4 HOH A 38 438 109 HOH HOH . Y 4 HOH A 39 439 44 HOH HOH . Y 4 HOH A 40 440 12 HOH HOH . Y 4 HOH A 41 441 98 HOH HOH . Y 4 HOH A 42 442 21 HOH HOH . Y 4 HOH A 43 443 42 HOH HOH . Y 4 HOH A 44 444 83 HOH HOH . Y 4 HOH A 45 445 14 HOH HOH . Y 4 HOH A 46 446 52 HOH HOH . Y 4 HOH A 47 447 49 HOH HOH . Y 4 HOH A 48 448 11 HOH HOH . Y 4 HOH A 49 449 27 HOH HOH . Y 4 HOH A 50 450 115 HOH HOH . Y 4 HOH A 51 451 24 HOH HOH . Y 4 HOH A 52 452 16 HOH HOH . Y 4 HOH A 53 453 118 HOH HOH . Y 4 HOH A 54 454 66 HOH HOH . Y 4 HOH A 55 455 43 HOH HOH . Y 4 HOH A 56 456 111 HOH HOH . Y 4 HOH A 57 457 47 HOH HOH . Y 4 HOH A 58 458 81 HOH HOH . Y 4 HOH A 59 459 23 HOH HOH . Y 4 HOH A 60 460 106 HOH HOH . Y 4 HOH A 61 461 116 HOH HOH . Y 4 HOH A 62 462 102 HOH HOH . Y 4 HOH A 63 463 15 HOH HOH . Y 4 HOH A 64 464 41 HOH HOH . Y 4 HOH A 65 465 34 HOH HOH . Y 4 HOH A 66 466 17 HOH HOH . Y 4 HOH A 67 467 26 HOH HOH . Y 4 HOH A 68 468 61 HOH HOH . Y 4 HOH A 69 469 59 HOH HOH . Y 4 HOH A 70 470 46 HOH HOH . Y 4 HOH A 71 471 32 HOH HOH . Y 4 HOH A 72 472 74 HOH HOH . Y 4 HOH A 73 473 65 HOH HOH . Y 4 HOH A 74 474 87 HOH HOH . Y 4 HOH A 75 475 30 HOH HOH . Y 4 HOH A 76 476 18 HOH HOH . Y 4 HOH A 77 477 25 HOH HOH . Y 4 HOH A 78 478 85 HOH HOH . Y 4 HOH A 79 479 22 HOH HOH . Y 4 HOH A 80 480 50 HOH HOH . Y 4 HOH A 81 481 38 HOH HOH . Y 4 HOH A 82 482 79 HOH HOH . Y 4 HOH A 83 483 64 HOH HOH . Y 4 HOH A 84 484 54 HOH HOH . Y 4 HOH A 85 485 93 HOH HOH . Y 4 HOH A 86 486 114 HOH HOH . Y 4 HOH A 87 487 62 HOH HOH . Y 4 HOH A 88 488 86 HOH HOH . Y 4 HOH A 89 489 75 HOH HOH . Y 4 HOH A 90 490 84 HOH HOH . Y 4 HOH A 91 491 103 HOH HOH . Y 4 HOH A 92 492 99 HOH HOH . Y 4 HOH A 93 493 117 HOH HOH . Y 4 HOH A 94 494 96 HOH HOH . Y 4 HOH A 95 495 33 HOH HOH . Y 4 HOH A 96 496 113 HOH HOH . Y 4 HOH A 97 497 119 HOH HOH . Y 4 HOH A 98 498 88 HOH HOH . Y 4 HOH A 99 499 55 HOH HOH . Y 4 HOH A 100 500 95 HOH HOH . Y 4 HOH A 101 501 53 HOH HOH . Y 4 HOH A 102 502 48 HOH HOH . Y 4 HOH A 103 503 90 HOH HOH . Y 4 HOH A 104 504 92 HOH HOH . Y 4 HOH A 105 505 67 HOH HOH . Y 4 HOH A 106 506 63 HOH HOH . Y 4 HOH A 107 507 71 HOH HOH . Y 4 HOH A 108 508 68 HOH HOH . Y 4 HOH A 109 509 72 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 C C1 RET . . . B 2 64.64 101.623 262.317 1 25.5 ? C1 RET 301 A 1 HETATM 2 C C2 RET . . . B 2 65.077 100.484 261.373 1 29.91 ? C2 RET 301 A 1 HETATM 3 C C3 RET . . . B 2 64.164 99.277 261.476 1 29.3 ? C3 RET 301 A 1 HETATM 4 C C4 RET . . . B 2 64.277 98.689 262.854 1 30.47 ? C4 RET 301 A 1 HETATM 5 C C5 RET . . . B 2 64.113 99.732 263.929 1 32.72 ? C5 RET 301 A 1 HETATM 6 C C6 RET . . . B 2 64.225 101.052 263.687 1 26.24 ? C6 RET 301 A 1 HETATM 7 C C7 RET . . . B 2 63.754 101.982 264.695 1 31.81 ? C7 RET 301 A 1 HETATM 8 C C8 RET . . . B 2 63.827 103.319 264.768 1 20.94 ? C8 RET 301 A 1 HETATM 9 C C9 RET . . . B 2 63.254 104.177 265.835 1 21.81 ? C9 RET 301 A 1 HETATM 10 C C10 RET . . . B 2 63.284 105.526 265.665 1 19.77 ? C10 RET 301 A 1 HETATM 11 C C11 RET . . . B 2 62.687 106.547 266.58 1 18.99 ? C11 RET 301 A 1 HETATM 12 C C12 RET . . . B 2 62.709 107.898 266.333 1 23.13 ? C12 RET 301 A 1 HETATM 13 C C13 RET . . . B 2 62.066 108.941 267.16 1 19.57 ? C13 RET 301 A 1 HETATM 14 C C14 RET . . . B 2 62.034 110.194 266.613 1 22.03 ? C14 RET 301 A 1 HETATM 15 C C15 RET . . . B 2 61.3 111.449 266.751 1 16.35 ? C15 RET 301 A 1 HETATM 16 C C16 RET . . . B 2 65.828 102.592 262.449 1 23.84 ? C16 RET 301 A 1 HETATM 17 C C17 RET . . . B 2 63.46 102.379 261.708 1 25.14 ? C17 RET 301 A 1 HETATM 18 C C18 RET . . . B 2 63.816 99.143 265.28 1 30.49 ? C18 RET 301 A 1 HETATM 19 C C19 RET . . . B 2 62.581 103.519 267.007 1 18.73 ? C19 RET 301 A 1 HETATM 20 C C20 RET . . . B 2 61.384 108.518 268.422 1 16.22 ? C20 RET 301 A 1 HETATM 21 H H21 RET . . . B 2 65.105 100.841 260.344 1 35.97 ? H21 RET 301 A 1 HETATM 22 H H22 RET . . . B 2 66.104 100.192 261.59 1 35.97 ? H22 RET 301 A 1 HETATM 23 H H31 RET . . . B 2 64.415 98.534 260.72 1 35.25 ? H31 RET 301 A 1 HETATM 24 H H32 RET . . . B 2 63.133 99.55 261.258 1 35.25 ? H32 RET 301 A 1 HETATM 25 H H41 RET . . . B 2 65.238 98.187 262.952 1 36.64 ? H41 RET 301 A 1 HETATM 26 H H42 RET . . . B 2 63.534 97.901 262.97 1 36.64 ? H42 RET 301 A 1 HETATM 27 H H7 RET . . . B 2 63.262 101.466 265.519 1 38.26 ? H7 RET 301 A 1 HETATM 28 H H8 RET . . . B 2 64.355 103.848 263.976 1 25.22 ? H8 RET 301 A 1 HETATM 29 H H10 RET . . . B 2 63.786 105.925 264.785 1 23.81 ? H10 RET 301 A 1 HETATM 30 H H11 RET . . . B 2 62.218 106.159 267.483 1 22.87 ? H11 RET 301 A 1 HETATM 31 H H12 RET . . . B 2 63.239 108.267 265.456 1 27.84 ? H12 RET 301 A 1 HETATM 32 H H14 RET . . . B 2 62.767 110.35 265.823 1 26.52 ? H14 RET 301 A 1 HETATM 33 H H15 RET . . . B 2 60.497 111.531 267.404 1 19.71 ? H15 RET 301 A 1 HETATM 34 H H161 RET . . . B 2 66.602 102.196 263.105 1 28.7 ? H161 RET 301 A 1 HETATM 35 H H162 RET . . . B 2 65.522 103.553 262.859 1 28.7 ? H162 RET 301 A 1 HETATM 36 H H163 RET . . . B 2 66.297 102.79 261.486 1 28.7 ? H163 RET 301 A 1 HETATM 37 H H171 RET . . . B 2 63.622 102.623 260.659 1 30.25 ? H171 RET 301 A 1 HETATM 38 H H172 RET . . . B 2 63.265 103.321 262.217 1 30.25 ? H172 RET 301 A 1 HETATM 39 H H173 RET . . . B 2 62.535 101.806 261.753 1 30.25 ? H173 RET 301 A 1 HETATM 40 H H181 RET . . . B 2 64.008 98.071 265.304 1 36.68 ? H181 RET 301 A 1 HETATM 41 H H182 RET . . . B 2 64.426 99.596 266.06 1 36.68 ? H182 RET 301 A 1 HETATM 42 H H183 RET . . . B 2 62.774 99.288 265.562 1 36.68 ? H183 RET 301 A 1 HETATM 43 H H191 RET . . . B 2 62.758 104.074 267.927 1 22.56 ? H191 RET 301 A 1 HETATM 44 H H192 RET . . . B 2 61.504 103.457 266.861 1 22.56 ? H192 RET 301 A 1 HETATM 45 H H193 RET . . . B 2 62.951 102.506 267.158 1 22.56 ? H193 RET 301 A 1 # _model_server_stats.io_time_ms 12 _model_server_stats.parse_time_ms 9 _model_server_stats.create_model_time_ms 4 _model_server_stats.query_time_ms 250 _model_server_stats.encode_time_ms 10 _model_server_stats.element_count 45 #