data_8CL9 # _model_server_result.job_id hpMN0ZJ-m6ahUCoS9t0p0w _model_server_result.datetime_utc '2024-11-17 01:57:12' _model_server_result.server_version 0.9.12 _model_server_result.query_name ligand _model_server_result.source_id pdb-bcif _model_server_result.entry_id 8cl9 # _model_server_params.name atom_site _model_server_params.value '{"label_asym_id":"D","auth_seq_id":501}' # _entry.id 8CL9 # _exptl.entry_id 8CL9 _exptl.method 'X-RAY DIFFRACTION' # _entity.details ? _entity.formula_weight 523.18 _entity.id 4 _entity.src_method nat _entity.type non-polymer _entity.pdbx_description "GUANOSINE-5'-TRIPHOSPHATE" _entity.pdbx_number_of_molecules 2 _entity.pdbx_parent_entity_id . _entity.pdbx_mutation ? _entity.pdbx_fragment ? _entity.pdbx_ec ? # _cell.angle_alpha 90 _cell.angle_beta 96.43 _cell.angle_gamma 90 _cell.entry_id 8CL9 _cell.length_a 73.47 _cell.length_b 91.19 _cell.length_c 82.7 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? # _symmetry.entry_id 8CL9 _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? _symmetry.space_group_name_H-M 'P 1 21 1' # _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details trimeric _pdbx_struct_assembly.oligomeric_count 3 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.id 1 # _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1 _pdbx_struct_oper_list.matrix[1][2] 0 _pdbx_struct_oper_list.matrix[1][3] 0 _pdbx_struct_oper_list.matrix[2][1] 0 _pdbx_struct_oper_list.matrix[2][2] 1 _pdbx_struct_oper_list.matrix[2][3] 0 _pdbx_struct_oper_list.matrix[3][1] 0 _pdbx_struct_oper_list.matrix[3][2] 0 _pdbx_struct_oper_list.matrix[3][3] 1 _pdbx_struct_oper_list.vector[1] 0 _pdbx_struct_oper_list.vector[2] 0 _pdbx_struct_oper_list.vector[3] 0 # loop_ _struct_asym.details _struct_asym.entity_id _struct_asym.id _struct_asym.pdbx_modified _struct_asym.pdbx_blank_PDB_chainid_flag ? 4 D N N ? 4 F N N # loop_ _struct_conn.conn_type_id _struct_conn.details _struct_conn.id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_atom_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_atom_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_PDB_id _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order metalc ? metalc1 D O1G GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.985 ? metalc ? metalc2 D O2B GTP . A GTP 501 1_555 E MG MG . A MG 502 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.316 ? metalc ? metalc3 E MG MG . A MG 502 1_555 G O HOH . A HOH 603 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.362 ? metalc ? metalc4 E MG MG . A MG 502 1_555 G O HOH . A HOH 607 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 1.992 ? metalc ? metalc5 E MG MG . A MG 502 1_555 G O HOH . A HOH 608 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.044 ? metalc ? metalc6 E MG MG . A MG 502 1_555 G O HOH . A HOH 652 1_555 ? ? ? ? ? ? ? ? ? ? ? ? 2.109 ? # _chem_comp.formula 'C10 H16 N5 O14 P3' _chem_comp.formula_weight 523.18 _chem_comp.id GTP _chem_comp.mon_nstd_flag n _chem_comp.name "GUANOSINE-5'-TRIPHOSPHATE" _chem_comp.type non-polymer _chem_comp.pdbx_synonyms ? # loop_ _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.comp_id _chem_comp_bond.value_order _chem_comp_bond.pdbx_ordinal _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_aromatic_flag PG O1G GTP doub 129 n n PG O2G GTP sing 130 n n PG O3G GTP sing 131 n n PG O3B GTP sing 132 n n O2G HOG2 GTP sing 133 n n O3G HOG3 GTP sing 134 n n O3B PB GTP sing 135 n n PB O1B GTP doub 136 n n PB O2B GTP sing 137 n n PB O3A GTP sing 138 n n O2B HOB2 GTP sing 139 n n O3A PA GTP sing 140 n n PA O1A GTP doub 141 n n PA O2A GTP sing 142 n n PA O5' GTP sing 143 n n O2A HOA2 GTP sing 144 n n O5' C5' GTP sing 145 n n C5' C4' GTP sing 146 n n C5' H5' GTP sing 147 n n C5' "H5''" GTP sing 148 n n C4' O4' GTP sing 149 n n C4' C3' GTP sing 150 n n C4' H4' GTP sing 151 n n O4' C1' GTP sing 152 n n C3' O3' GTP sing 153 n n C3' C2' GTP sing 154 n n C3' H3' GTP sing 155 n n O3' HO3' GTP sing 156 n n C2' O2' GTP sing 157 n n C2' C1' GTP sing 158 n n C2' H2' GTP sing 159 n n O2' HO2' GTP sing 160 n n C1' N9 GTP sing 161 n n C1' H1' GTP sing 162 n n N9 C8 GTP sing 163 n y N9 C4 GTP sing 164 n y C8 N7 GTP doub 165 n y C8 H8 GTP sing 166 n n N7 C5 GTP sing 167 n y C5 C6 GTP sing 168 n n C5 C4 GTP doub 169 n y C6 O6 GTP doub 170 n n C6 N1 GTP sing 171 n n N1 C2 GTP sing 172 n n N1 HN1 GTP sing 173 n n C2 N2 GTP sing 174 n n C2 N3 GTP doub 175 n n N2 HN21 GTP sing 176 n n N2 HN22 GTP sing 177 n n N3 C4 GTP sing 178 n n # _atom_sites.entry_id 8CL9 _atom_sites.fract_transf_matrix[1][1] 0.013611 _atom_sites.fract_transf_matrix[1][2] 0 _atom_sites.fract_transf_matrix[1][3] 0.001534 _atom_sites.fract_transf_matrix[2][1] 0 _atom_sites.fract_transf_matrix[2][2] 0.010966 _atom_sites.fract_transf_matrix[2][3] 0 _atom_sites.fract_transf_matrix[3][1] 0 _atom_sites.fract_transf_matrix[3][2] 0 _atom_sites.fract_transf_matrix[3][3] 0.012168 _atom_sites.fract_transf_vector[1] 0 _atom_sites.fract_transf_vector[2] 0 _atom_sites.fract_transf_vector[3] 0 # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_ins_code D 4 GTP A 1 501 501 GTP GTP . E 5 MG A 1 502 502 MG MG . F 4 GTP B 1 501 503 GTP GTP . G 6 HOH A 1 601 168 HOH HOH . G 6 HOH A 2 602 106 HOH HOH . G 6 HOH A 3 603 169 HOH HOH . G 6 HOH A 4 604 148 HOH HOH . G 6 HOH A 5 605 92 HOH HOH . G 6 HOH A 6 606 119 HOH HOH . G 6 HOH A 7 607 2 HOH HOH . G 6 HOH A 8 608 1 HOH HOH . G 6 HOH A 9 609 163 HOH HOH . G 6 HOH A 10 610 4 HOH HOH . G 6 HOH A 11 611 5 HOH HOH . G 6 HOH A 12 612 79 HOH HOH . G 6 HOH A 13 613 53 HOH HOH . G 6 HOH A 14 614 122 HOH HOH . G 6 HOH A 15 615 138 HOH HOH . G 6 HOH A 16 616 164 HOH HOH . G 6 HOH A 17 617 107 HOH HOH . G 6 HOH A 18 618 41 HOH HOH . G 6 HOH A 19 619 142 HOH HOH . G 6 HOH A 20 620 6 HOH HOH . G 6 HOH A 21 621 161 HOH HOH . G 6 HOH A 22 622 65 HOH HOH . G 6 HOH A 23 623 143 HOH HOH . G 6 HOH A 24 624 16 HOH HOH . G 6 HOH A 25 625 86 HOH HOH . G 6 HOH A 26 626 26 HOH HOH . G 6 HOH A 27 627 71 HOH HOH . G 6 HOH A 28 628 174 HOH HOH . G 6 HOH A 29 629 69 HOH HOH . G 6 HOH A 30 630 7 HOH HOH . G 6 HOH A 31 631 43 HOH HOH . G 6 HOH A 32 632 49 HOH HOH . G 6 HOH A 33 633 99 HOH HOH . G 6 HOH A 34 634 18 HOH HOH . G 6 HOH A 35 635 149 HOH HOH . G 6 HOH A 36 636 47 HOH HOH . G 6 HOH A 37 637 42 HOH HOH . G 6 HOH A 38 638 166 HOH HOH . G 6 HOH A 39 639 24 HOH HOH . G 6 HOH A 40 640 44 HOH HOH . G 6 HOH A 41 641 109 HOH HOH . G 6 HOH A 42 642 101 HOH HOH . G 6 HOH A 43 643 67 HOH HOH . G 6 HOH A 44 644 34 HOH HOH . G 6 HOH A 45 645 45 HOH HOH . G 6 HOH A 46 646 30 HOH HOH . G 6 HOH A 47 647 25 HOH HOH . G 6 HOH A 48 648 89 HOH HOH . G 6 HOH A 49 649 51 HOH HOH . G 6 HOH A 50 650 57 HOH HOH . G 6 HOH A 51 651 19 HOH HOH . G 6 HOH A 52 652 13 HOH HOH . G 6 HOH A 53 653 158 HOH HOH . G 6 HOH A 54 654 72 HOH HOH . G 6 HOH A 55 655 27 HOH HOH . G 6 HOH A 56 656 55 HOH HOH . G 6 HOH A 57 657 50 HOH HOH . G 6 HOH A 58 658 38 HOH HOH . G 6 HOH A 59 659 33 HOH HOH . G 6 HOH A 60 660 37 HOH HOH . G 6 HOH A 61 661 123 HOH HOH . G 6 HOH A 62 662 20 HOH HOH . G 6 HOH A 63 663 139 HOH HOH . G 6 HOH A 64 664 87 HOH HOH . G 6 HOH A 65 665 64 HOH HOH . G 6 HOH A 66 666 172 HOH HOH . G 6 HOH A 67 667 102 HOH HOH . G 6 HOH A 68 668 173 HOH HOH . G 6 HOH A 69 669 125 HOH HOH . G 6 HOH A 70 670 171 HOH HOH . G 6 HOH A 71 671 62 HOH HOH . G 6 HOH A 72 672 113 HOH HOH . G 6 HOH A 73 673 40 HOH HOH . G 6 HOH A 74 674 121 HOH HOH . G 6 HOH A 75 675 127 HOH HOH . G 6 HOH A 76 676 115 HOH HOH . H 6 HOH B 1 601 167 HOH HOH . H 6 HOH B 2 602 160 HOH HOH . H 6 HOH B 3 603 10 HOH HOH . H 6 HOH B 4 604 28 HOH HOH . H 6 HOH B 5 605 175 HOH HOH . H 6 HOH B 6 606 83 HOH HOH . H 6 HOH B 7 607 145 HOH HOH . H 6 HOH B 8 608 136 HOH HOH . H 6 HOH B 9 609 31 HOH HOH . H 6 HOH B 10 610 177 HOH HOH . H 6 HOH B 11 611 176 HOH HOH . H 6 HOH B 12 612 117 HOH HOH . H 6 HOH B 13 613 91 HOH HOH . H 6 HOH B 14 614 178 HOH HOH . H 6 HOH B 15 615 29 HOH HOH . H 6 HOH B 16 616 82 HOH HOH . H 6 HOH B 17 617 12 HOH HOH . H 6 HOH B 18 618 36 HOH HOH . H 6 HOH B 19 619 81 HOH HOH . H 6 HOH B 20 620 58 HOH HOH . H 6 HOH B 21 621 46 HOH HOH . H 6 HOH B 22 622 126 HOH HOH . H 6 HOH B 23 623 165 HOH HOH . H 6 HOH B 24 624 48 HOH HOH . H 6 HOH B 25 625 111 HOH HOH . H 6 HOH B 26 626 32 HOH HOH . H 6 HOH B 27 627 144 HOH HOH . H 6 HOH B 28 628 157 HOH HOH . H 6 HOH B 29 629 141 HOH HOH . H 6 HOH B 30 630 14 HOH HOH . H 6 HOH B 31 631 8 HOH HOH . H 6 HOH B 32 632 90 HOH HOH . H 6 HOH B 33 633 153 HOH HOH . H 6 HOH B 34 634 77 HOH HOH . H 6 HOH B 35 635 110 HOH HOH . H 6 HOH B 36 636 103 HOH HOH . H 6 HOH B 37 637 151 HOH HOH . H 6 HOH B 38 638 133 HOH HOH . H 6 HOH B 39 639 84 HOH HOH . H 6 HOH B 40 640 147 HOH HOH . H 6 HOH B 41 641 131 HOH HOH . H 6 HOH B 42 642 156 HOH HOH . H 6 HOH B 43 643 68 HOH HOH . H 6 HOH B 44 644 132 HOH HOH . H 6 HOH B 45 645 114 HOH HOH . I 6 HOH F 1 201 94 HOH HOH . I 6 HOH F 2 202 21 HOH HOH . I 6 HOH F 3 203 35 HOH HOH . I 6 HOH F 4 204 15 HOH HOH . I 6 HOH F 5 205 17 HOH HOH . I 6 HOH F 6 206 11 HOH HOH . I 6 HOH F 7 207 3 HOH HOH . I 6 HOH F 8 208 59 HOH HOH . I 6 HOH F 9 209 9 HOH HOH . I 6 HOH F 10 210 120 HOH HOH . I 6 HOH F 11 211 74 HOH HOH . I 6 HOH F 12 212 105 HOH HOH . I 6 HOH F 13 213 95 HOH HOH . I 6 HOH F 14 214 23 HOH HOH . I 6 HOH F 15 215 22 HOH HOH . I 6 HOH F 16 216 56 HOH HOH . I 6 HOH F 17 217 100 HOH HOH . I 6 HOH F 18 218 39 HOH HOH . I 6 HOH F 19 219 85 HOH HOH . I 6 HOH F 20 220 150 HOH HOH . I 6 HOH F 21 221 60 HOH HOH . I 6 HOH F 22 222 52 HOH HOH . I 6 HOH F 23 223 135 HOH HOH . I 6 HOH F 24 224 112 HOH HOH . # loop_ _atom_site.group_PDB _atom_site.id _atom_site.type_symbol _atom_site.label_atom_id _atom_site.label_comp_id _atom_site.label_seq_id _atom_site.label_alt_id _atom_site.pdbx_PDB_ins_code _atom_site.label_asym_id _atom_site.label_entity_id _atom_site.Cartn_x _atom_site.Cartn_y _atom_site.Cartn_z _atom_site.occupancy _atom_site.B_iso_or_equiv _atom_site.pdbx_formal_charge _atom_site.auth_atom_id _atom_site.auth_comp_id _atom_site.auth_seq_id _atom_site.auth_asym_id _atom_site.pdbx_PDB_model_num HETATM 1 P PG GTP . . . D 4 103.505 23.704 23.583 1 18.54 ? PG GTP 501 A 1 HETATM 2 O O1G GTP . . . D 4 103.752 22.237 23.534 1 13.86 ? O1G GTP 501 A 1 HETATM 3 O O2G GTP . . . D 4 104.248 24.371 24.674 1 17.31 ? O2G GTP 501 A 1 HETATM 4 O O3G GTP . . . D 4 102.068 24.057 23.581 1 19.77 ? O3G GTP 501 A 1 HETATM 5 O O3B GTP . . . D 4 104.092 24.275 22.203 1 29.52 ? O3B GTP 501 A 1 HETATM 6 P PB GTP . . . D 4 104.923 23.632 21 1 14.38 ? PB GTP 501 A 1 HETATM 7 O O1B GTP . . . D 4 105.574 24.722 20.248 1 20.5 ? O1B GTP 501 A 1 HETATM 8 O O2B GTP . . . D 4 105.739 22.516 21.522 1 16.35 ? O2B GTP 501 A 1 HETATM 9 O O3A GTP . . . D 4 103.731 23.041 20.12 1 20.82 ? O3A GTP 501 A 1 HETATM 10 P PA GTP . . . D 4 103.567 22.427 18.655 1 14.72 ? PA GTP 501 A 1 HETATM 11 O O1A GTP . . . D 4 104.817 22.641 17.882 1 10.36 ? O1A GTP 501 A 1 HETATM 12 O O2A GTP . . . D 4 103.045 21.041 18.774 1 32.52 ? O2A GTP 501 A 1 HETATM 13 O O5' GTP . . . D 4 102.42 23.384 18.093 1 21.63 ? O5' GTP 501 A 1 HETATM 14 C C5' GTP . . . D 4 101.201 22.83 17.558 1 11.39 ? C5' GTP 501 A 1 HETATM 15 C C4' GTP . . . D 4 101.051 23.278 16.127 1 21.2 ? C4' GTP 501 A 1 HETATM 16 O O4' GTP . . . D 4 102.226 22.874 15.384 1 18.92 ? O4' GTP 501 A 1 HETATM 17 C C3' GTP . . . D 4 99.865 22.684 15.36 1 27.81 ? C3' GTP 501 A 1 HETATM 18 O O3' GTP . . . D 4 99.383 23.58 14.371 1 22.54 ? O3' GTP 501 A 1 HETATM 19 C C2' GTP . . . D 4 100.473 21.427 14.74 1 20.61 ? C2' GTP 501 A 1 HETATM 20 O O2' GTP . . . D 4 99.814 21.038 13.558 1 29.29 ? O2' GTP 501 A 1 HETATM 21 C C1' GTP . . . D 4 101.898 21.88 14.445 1 19.09 ? C1' GTP 501 A 1 HETATM 22 N N9 GTP . . . D 4 102.881 20.814 14.553 1 24.71 ? N9 GTP 501 A 1 HETATM 23 C C8 GTP . . . D 4 103.266 20.148 15.686 1 17.34 ? C8 GTP 501 A 1 HETATM 24 N N7 GTP . . . D 4 104.177 19.235 15.464 1 18.95 ? N7 GTP 501 A 1 HETATM 25 C C5 GTP . . . D 4 104.4 19.303 14.097 1 16.16 ? C5 GTP 501 A 1 HETATM 26 C C6 GTP . . . D 4 105.283 18.561 13.281 1 20.36 ? C6 GTP 501 A 1 HETATM 27 O O6 GTP . . . D 4 106.061 17.662 13.614 1 24.9 ? O6 GTP 501 A 1 HETATM 28 N N1 GTP . . . D 4 105.191 18.955 11.948 1 23.89 ? N1 GTP 501 A 1 HETATM 29 C C2 GTP . . . D 4 104.366 19.936 11.463 1 15.2 ? C2 GTP 501 A 1 HETATM 30 N N2 GTP . . . D 4 104.423 20.173 10.148 1 13.88 ? N2 GTP 501 A 1 HETATM 31 N N3 GTP . . . D 4 103.537 20.639 12.226 1 18.64 ? N3 GTP 501 A 1 HETATM 32 C C4 GTP . . . D 4 103.607 20.269 13.525 1 17.87 ? C4 GTP 501 A 1 # _model_server_stats.io_time_ms 69 _model_server_stats.parse_time_ms 23 _model_server_stats.create_model_time_ms 44 _model_server_stats.query_time_ms 326 _model_server_stats.encode_time_ms 4 _model_server_stats.element_count 32 #